mRNA_H-paniculata_contig18042.4356.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig18042.4356.1 vs. uniprot
Match: D7FSG0_ECTSI (Terminal deoxycytidyl transferase rev1, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSG0_ECTSI) HSP 1 Score: 199 bits (505), Expect = 2.180e-56 Identity = 92/118 (77.97%), Postives = 103/118 (87.29%), Query Frame = 1
Query: 40 QDLPGVGWKLRRRLNEENMNICSDLWPLPVARLQKGFGLGEKTGQALWEACRGIDNRPVQAPPDRKSIGAEVNYGVRFDTQAQANDFVSKLAVELSSRMDVEEVVGRALTLKIMKQRD 393
QDLPGVGWKLR+RLNE+ + CSDLWPL + +QKG LGEKTG+ALWEACRGID RPVQAPPDRKSIGAEVNYGVRFDTQ QA+ F+S+LAVELS RM E V+GRALTLK+MKQRD
Sbjct: 564 QDLPGVGWKLRKRLNEQGLTSCSDLWPLSLTHMQKGLALGEKTGRALWEACRGIDKRPVQAPPDRKSIGAEVNYGVRFDTQTQADGFLSELAVELSRRMLTEGVLGRALTLKVMKQRD 681
BLAST of mRNA_H-paniculata_contig18042.4356.1 vs. uniprot
Match: A0A6H5L1W8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1W8_9PHAE) HSP 1 Score: 197 bits (502), Expect = 5.570e-56 Identity = 93/118 (78.81%), Postives = 103/118 (87.29%), Query Frame = 1
Query: 40 QDLPGVGWKLRRRLNEENMNICSDLWPLPVARLQKGFGLGEKTGQALWEACRGIDNRPVQAPPDRKSIGAEVNYGVRFDTQAQANDFVSKLAVELSSRMDVEEVVGRALTLKIMKQRD 393
QDLPGVGWKLR+RLNE + CSDLWPL + +QKG GLGEKTG+ALWEACRGID RPVQAPPDRKSIGAEVNYGVRFDTQAQA+ F+S+LA ELS RM E V+G+ALTLKIMKQRD
Sbjct: 826 QDLPGVGWKLRKRLNEHGIASCSDLWPLSLTHMQKGLGLGEKTGRALWEACRGIDKRPVQAPPDRKSIGAEVNYGVRFDTQAQADGFLSELAEELSRRMVAEGVLGQALTLKIMKQRD 943
BLAST of mRNA_H-paniculata_contig18042.4356.1 vs. uniprot
Match: UPI001C721764 (DNA repair protein REV1 isoform X1 n=2 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI001C721764) HSP 1 Score: 119 bits (299), Expect = 1.170e-28 Identity = 52/116 (44.83%), Postives = 81/116 (69.83%), Query Frame = 1
Query: 43 DLPGVGWKLRRRLNEENMNICSDLWPLPVARLQKGFGLGEKTGQALWEACRGIDNRPVQAPPDRKSIGAEVNYGVRFDTQAQANDFVSKLAVELSSRMDVEEVVGRALTLKIMKQR 390
DLPGVG++ ++ + + C DL L +A+LQ+ FG KTG++++ CRG+DNR VQ DRKS+ AE+NYG+RF+T N F+++LAVE+ +R+ + G+A+TLK+M +R
Sbjct: 565 DLPGVGYRTSKKFKQRGIVTCGDLQNLSLAKLQQEFG--PKTGESIYNKCRGVDNRVVQVQKDRKSVSAEINYGIRFETDEDVNQFINELAVEVQNRLKIINSKGKAITLKLMVRR 678
BLAST of mRNA_H-paniculata_contig18042.4356.1 vs. uniprot
Match: A0A8B7Z4U9_ACAPL (DNA repair protein REV1 n=2 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Z4U9_ACAPL) HSP 1 Score: 119 bits (298), Expect = 1.630e-28 Identity = 60/125 (48.00%), Postives = 80/125 (64.00%), Query Frame = 1
Query: 40 QDLPGVGWKLRRRLNEENMNICSDLWPLPVARLQKGFGLGEKTGQALWEACRGIDNRPVQAPPDRKSIGAEVNYGVRFDTQAQANDFVSKLAVELSSRMDVEEVVGRALTLKIMKQRDVSQPYTT 414
+DLPGVGW RL + C DL L + LQK FG KTGQ+L+ CRGIDNRP++A +RKS+ AE+NYG+RF ++A FVS+LA E+ R+ +VG+ +TLK+ K R S P T
Sbjct: 666 KDLPGVGWSTGARLRTMGIETCVDLQNLSLGALQKEFG--PKTGQSLYSYCRGIDNRPIRAERERKSVSAEINYGIRFTQNSEATRFVSELAEEVHRRLTAIAMVGKTITLKL-KVRQASAPKQT 787
BLAST of mRNA_H-paniculata_contig18042.4356.1 vs. uniprot
Match: A0A6U9RMQ7_9CHLO (DNA repair protein REV1 n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A6U9RMQ7_9CHLO) HSP 1 Score: 118 bits (296), Expect = 2.940e-28 Identity = 59/126 (46.83%), Postives = 86/126 (68.25%), Query Frame = 1
Query: 43 DLPGVGWKLRRRLNEENMNICSDLWPLPVARLQKGFGLGEKTGQALWEACRGIDNRPVQAPPDRKSIGAEVNYGVRFDTQAQANDFVSKLAVELSSRMDVEEVVGRALTLKIM-KQRDVSQPYTTL 417
+LPGVGW R++L N++IC+DL +P + LQ+ FG +KTG+ L+ CRGID R V+ P RKSIGAEVN+GVRF+ +A+A F+ L E+ R+ ++ GR +TLK+ KQ+ ++PY L
Sbjct: 428 ELPGVGWSTRQKLTAMNIDICADLVEVPKSVLQQEFG--QKTGELLFNHCRGIDGRKVETQPVRKSIGAEVNWGVRFNHEAEAIKFMEDLCGEIQKRLRHAKLKGRCVTLKLKRKQQGANEPYKFL 551
BLAST of mRNA_H-paniculata_contig18042.4356.1 vs. uniprot
Match: V4AK20_LOTGI (DNA repair protein REV1 n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4AK20_LOTGI) HSP 1 Score: 116 bits (290), Expect = 1.940e-27 Identity = 51/121 (42.15%), Postives = 82/121 (67.77%), Query Frame = 1
Query: 31 VHAQDLPGVGWKLRRRLNEENMNICSDLWPLPVARLQKGFGLGEKTGQALWEACRGIDNRPVQAPPDRKSIGAEVNYGVRFDTQAQANDFVSKLAVELSSRMDVEEVVGRALTLKIMKQRD 393
V +DLPGVGW + R+L+ N+ C DL +P++ LQK FG KTGQ+L+ +CRGID+RP++ +RKS+ AE+NYG+RF + + F + L+ E+ +R+ + G+ +TLK+ +R+
Sbjct: 589 VSVRDLPGVGWSMNRKLSNMNVKTCGDLQSVPLSTLQKEFG--SKTGQSLYNSCRGIDDRPIKMENERKSVSAEINYGIRFQKEHECVKFFNDLSEEVHNRLQKVKRKGKVVTLKLKVRRE 707
BLAST of mRNA_H-paniculata_contig18042.4356.1 vs. uniprot
Match: UPI001425AE76 (DNA repair protein REV1-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425AE76) HSP 1 Score: 115 bits (288), Expect = 3.590e-27 Identity = 58/121 (47.93%), Postives = 80/121 (66.12%), Query Frame = 1
Query: 43 DLPGVGWKLRRRLNEENMNICSDLWPLPVARLQKGFGLGEKTGQALWEACRGIDNRPVQAPPDRKSIGAEVNYGVRFDTQAQANDFVSKLAVELSSRMDVEEVVGRALTLKIMKQRDVSQP 405
DLPGVGW ++RRL ++N C DL +P+A LQK FG KTG+ L+ CRG D+R +QA RKS+ AE+NYG+RF +++A DFVS++ E+ R+ V G+ +TLK MK R P
Sbjct: 564 DLPGVGWSMKRRLEALSVNSCGDLQLVPMATLQKEFGA--KTGKHLYNLCRGQDDRAIQAEKQRKSVSAEINYGIRFTKESEAVDFVSEVVEEVHRRLLKISVKGKTITLK-MKVRKPDAP 681
BLAST of mRNA_H-paniculata_contig18042.4356.1 vs. uniprot
Match: A0A388JX12_CHABU (UmuC domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JX12_CHABU) HSP 1 Score: 115 bits (287), Expect = 4.950e-27 Identity = 55/120 (45.83%), Postives = 77/120 (64.17%), Query Frame = 1
Query: 31 VHAQDLPGVGWKLRRRLNEENMNICSDLWPLPVARLQKGFGLGEKTGQALWEACRGIDNRPVQAPPDRKSIGAEVNYGVRFDTQAQANDFVSKLAVELSSRMDVEEVVGRALTLKIMKQR 390
+ DLPGVGW L+ RL + +N+C +L L LQ+ FG+ KTG LW RGID+R V+ +RKSIGAEVN+GVRF + A+ F+S LA E+ R+ ++ GR TLK+ K++
Sbjct: 592 LEVSDLPGVGWSLKERLKAKGINLCKELRRLSKEALQREFGV--KTGDMLWAYARGIDHREVKCVQERKSIGAEVNWGVRFTKEEDAHTFLSNLAEEVCGRLSSAQLKGRTFTLKVKKRK 709
BLAST of mRNA_H-paniculata_contig18042.4356.1 vs. uniprot
Match: UPI00083C6C98 (DNA repair protein REV1 n=1 Tax=Eufriesea mexicana TaxID=516756 RepID=UPI00083C6C98) HSP 1 Score: 114 bits (286), Expect = 6.640e-27 Identity = 53/116 (45.69%), Postives = 75/116 (64.66%), Query Frame = 1
Query: 34 HAQDLPGVGWKLRRRLNEENMNICSDLWPLPVARLQKGFGLGEKTGQALWEACRGIDNRPVQAPPDRKSIGAEVNYGVRFDTQAQANDFVSKLAVELSSRMDVEEVVGRALTLKIM 381
+ QDLPGVGW +LN N+ C++L +P+A LQK FG +KTG+ L+ CRGIDN + RKS+ AEVNYG+RF++ A DF+ KL E+ +R+ GR +TLK++
Sbjct: 487 NVQDLPGVGWTTTHKLNNINVRTCAELQKIPLATLQKEFG--KKTGEILYNMCRGIDNGKLNLEHVRKSVSAEVNYGIRFESNDDAIDFLKKLCCEVCNRLSKANAKGRCITLKLL 600
BLAST of mRNA_H-paniculata_contig18042.4356.1 vs. uniprot
Match: A0A087ST14_AUXPR (DNA repair protein REV1 n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087ST14_AUXPR) HSP 1 Score: 112 bits (281), Expect = 9.340e-27 Identity = 59/117 (50.43%), Postives = 76/117 (64.96%), Query Frame = 1
Query: 43 DLPGVGWKLRRRLNEENMNICSDLWPLPVARLQKGFGLGEKTGQALWEACRGIDNRPVQAPPDRKSIGAEVNYGVRFDTQAQANDFVSKLAVELSSRMDVEEVVGRALTLKIMKQRD 393
DLPGVGW ++L + +DL ARLQ LG+KTG ALW+A RGID R V P RKS+GAEVN+GVRFD+ A F+ KLA E+ +RM V GR+LTLK+ K+++
Sbjct: 259 DLPGVGWATSKKLASLGLQSVADLQAWSKARLQAE--LGDKTGAALWDASRGIDTRRVAPPAVRKSLGAEVNWGVRFDSPQDATRFLGKLAEEVWTRMGAAGVQGRSLTLKLKKRKE 373 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18042.4356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18042.4356.1 >prot_H-paniculata_contig18042.4356.1 ID=prot_H-paniculata_contig18042.4356.1|Name=mRNA_H-paniculata_contig18042.4356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp MSICAFITVIVHAQDLPGVGWKLRRRLNEENMNICSDLWPLPVARLQKGFback to top mRNA from alignment at H-paniculata_contig18042:411..1617- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18042.4356.1 ID=mRNA_H-paniculata_contig18042.4356.1|Name=mRNA_H-paniculata_contig18042.4356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1207bp|location=Sequence derived from alignment at H-paniculata_contig18042:411..1617- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18042:411..1617- >mRNA_H-paniculata_contig18042.4356.1 ID=mRNA_H-paniculata_contig18042.4356.1|Name=mRNA_H-paniculata_contig18042.4356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig18042:411..1617- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |