mRNA_H-paniculata_contig18037.4354.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18037.4354.1
Unique NamemRNA_H-paniculata_contig18037.4354.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18037.4354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18037contigH-paniculata_contig18037:2571..2931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size361
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929405.919928-CDS-H-paniculata_contig18037:2570..28761622929405.919928-CDS-H-paniculata_contig18037:2570..2876Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18037 2571..2876 +
1691480847.1868646-CDS-H-paniculata_contig18037:2570..28761691480847.1868646-CDS-H-paniculata_contig18037:2570..2876Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18037 2571..2876 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929405.9320445-UTR-H-paniculata_contig18037:2876..29311622929405.9320445-UTR-H-paniculata_contig18037:2876..2931Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18037 2877..2931 +
1691480847.1970174-UTR-H-paniculata_contig18037:2876..29311691480847.1970174-UTR-H-paniculata_contig18037:2876..2931Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18037 2877..2931 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18037.4354.1prot_H-paniculata_contig18037.4354.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18037 2571..2876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18037.4354.1

>prot_H-paniculata_contig18037.4354.1 ID=prot_H-paniculata_contig18037.4354.1|Name=mRNA_H-paniculata_contig18037.4354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
DGSLPTTDIDVLGGHDAPERNSRRLQGKVGNLIHKAEITSLLSLLDNLSP
VGRPSSPDDPFGGRFRRMSGTEALVVSKGTALRQRQDHTASRARAHGAEV
S*
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mRNA from alignment at H-paniculata_contig18037:2571..2931+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18037.4354.1 ID=mRNA_H-paniculata_contig18037.4354.1|Name=mRNA_H-paniculata_contig18037.4354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=361bp|location=Sequence derived from alignment at H-paniculata_contig18037:2571..2931+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGGATCGCTGCCCACAACGGACATCGACGTTCTAGGAGGGCACGACGC
GCCAGAGAGGAACTCTCGTCGGCTGCAAGGAAAGGTCGGTAATCTGATTC
ACAAGGCCGAGATAACGAGCTTGCTCTCGCTGCTTGACAACCTATCCCCG
GTCGGTAGACCATCTAGCCCTGATGACCCGTTCGGAGGGAGGTTCCGCAG
AATGTCGGGGACTGAAGCTCTGGTGGTTTCAAAGGGCACAGCCCTACGAC
AACGCCAGGACCATACCGCCAGCAGAGCACGTGCACATGGAGCGGAGGTT
TCTTGACATTGAGCCCTATTTAGCCGCTCGATGCCCATGGTGCGGAGCGG
AGGACGTAACC
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Coding sequence (CDS) from alignment at H-paniculata_contig18037:2571..2931+

>mRNA_H-paniculata_contig18037.4354.1 ID=mRNA_H-paniculata_contig18037.4354.1|Name=mRNA_H-paniculata_contig18037.4354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig18037:2571..2931+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGGATCGCTGCCCACAACGGACATCGACGTTCTAGGAGGGCACGACGC
GCCAGAGAGGAACTCTCGTCGGCTGCAAGGAAAGGTCGGTAATCTGATTC
ACAAGGCCGAGATAACGAGCTTGCTCTCGCTGCTTGACAACCTATCCCCG
GTCGGTAGACCATCTAGCCCTGATGACCCGTTCGGAGGGAGGTTCCGCAG
AATGTCGGGGACTGAAGCTCTGGTGGTTTCAAAGGGCACAGCCCTACGAC
AACGCCAGGACCATACCGCCAGCAGAGCACGTGCACATGGAGCGGAGGTT
TCTTGAGACGGATCGCTGCCCACAACGGACATCGACGTTCTAGGAGGGCA
CGACGCGCCAGAGAGGAACTCTCGTCGGCTGCAAGGAAAGGTCGGTAATC
TGATTCACAAGGCCGAGATAACGAGCTTGCTCTCGCTGCTTGACAACCTA
TCCCCGGTCGGTAGACCATCTAGCCCTGATGACCCGTTCGGAGGGAGGTT
CCGCAGAATGTCGGGGACTGAAGCTCTGGTGGTTTCAAAGGGCACAGCCC
TACGACAACGCCAGGACCATACCGCCAGCAGAGCACGTGCACATGGAGCG
GAGGTTTCTTGA
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