prot_H-paniculata_contig18027.4350.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig18027.4350.1
Unique Name	prot_H-paniculata_contig18027.4350.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	166

Homology

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BLAST of mRNA_H-paniculata_contig18027.4350.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.280e-35
Identity = 68/159 (42.77%), Postives = 107/159 (67.30%), Query Frame = 0

Query:    1 PSNFKEAVTSQHWNVRRNSMNLENDGLVETGTFEEETTL-EGNKPIDSMWSYKWKQDPDGMVIGAKATSVARGDEQIHGQNYDDTFSPTPVMSTVKTGVAVANELELDMYHFDVAQAFVQSELKDGIHLRLTEGWDTAAGKVVKLNRSIYGLKQASRTW 158
            P +++EA+ S+H  +   +M+ E +GL+  GTF     + EG   ID+ W +KWK D  G ++ AKA  VA+G +Q HG +Y +TFSPT   ++++  VA+A +  L++ H D+ QAFVQS+L   + ++L  G D+ +GK+V+LN+S+YGLKQASRT+
Sbjct:  418 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTF 576

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BLAST of mRNA_H-paniculata_contig18027.4350.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.310e-35
Identity = 68/159 (42.77%), Postives = 107/159 (67.30%), Query Frame = 0

Query:    1 PSNFKEAVTSQHWNVRRNSMNLENDGLVETGTFEEETTL-EGNKPIDSMWSYKWKQDPDGMVIGAKATSVARGDEQIHGQNYDDTFSPTPVMSTVKTGVAVANELELDMYHFDVAQAFVQSELKDGIHLRLTEGWDTAAGKVVKLNRSIYGLKQASRTW 158
            P +++EA+ S+H  +   +M+ E +GL+  GTF     + EG   ID+ W +KWK D  G ++ AKA  VA+G +Q HG +Y +TFSPT   ++++  VA+A +  L++ H D+ QAFVQS+L   + ++L  G D+ +GK+V+LN+S+YGLKQASRT+
Sbjct:  482 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTF 640

[Close]

BLAST of mRNA_H-paniculata_contig18027.4350.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.320e-35
Identity = 68/159 (42.77%), Postives = 107/159 (67.30%), Query Frame = 0

Query:    1 PSNFKEAVTSQHWNVRRNSMNLENDGLVETGTFEEETTL-EGNKPIDSMWSYKWKQDPDGMVIGAKATSVARGDEQIHGQNYDDTFSPTPVMSTVKTGVAVANELELDMYHFDVAQAFVQSELKDGIHLRLTEGWDTAAGKVVKLNRSIYGLKQASRTW 158
            P +++EA+ S+H  +   +M+ E +GL+  GTF     + EG   ID+ W +KWK D  G ++ AKA  VA+G +Q HG +Y +TFSPT   ++++  VA+A +  L++ H D+ QAFVQS+L   + ++L  G D+ +GK+V+LN+S+YGLKQASRT+
Sbjct:  626 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTF 784

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BLAST of mRNA_H-paniculata_contig18027.4350.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.590e-34
Identity = 67/159 (42.14%), Postives = 106/159 (66.67%), Query Frame = 0

Query:    1 PSNFKEAVTSQHWNVRRNSMNLENDGLVETGTFEEETTL-EGNKPIDSMWSYKWKQDPDGMVIGAKATSVARGDEQIHGQNYDDTFSPTPVMSTVKTGVAVANELELDMYHFDVAQAFVQSELKDGIHLRLTEGWDTAAGKVVKLNRSIYGLKQASRTW 158
            P +++EA+ S+H  +   +M+ E +GL+  GTF     + EG   ID+ W +KWK D  G ++ AKA  VA+G +Q HG +Y +TFSPT   ++++  VA+A +  L++ H D+ QAF QS+L   + ++L  G D+ +GK+V+LN+S+YGLKQASRT+
Sbjct:  213 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTF 371

[Close]

BLAST of mRNA_H-paniculata_contig18027.4350.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 9.320e-34
Identity = 67/159 (42.14%), Postives = 105/159 (66.04%), Query Frame = 0

Query:    1 PSNFKEAVTSQHWNVRRNSMNLENDGLVETGTFEEETTL-EGNKPIDSMWSYKWKQDPDGMVIGAKATSVARGDEQIHGQNYDDTFSPTPVMSTVKTGVAVANELELDMYHFDVAQAFVQSELKDGIHLRLTEGWDTAAGKVVKLNRSIYGLKQASRTW 158
            P +++EA+ ++H  +   +M  E +GL+  GTF     + EG   ID+ W +KWK D  G ++ AKA  VA+G +Q HG +Y +TFSPT   ++++  VA+A +  L++ H D+ QAFVQS+L   + ++L  G D+ +GK+V+LN+S YGLKQASRT+
Sbjct:  146 PGSYQEALRAKHATIWDKAMCAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSWYGLKQASRTF 304

[Close]

BLAST of mRNA_H-paniculata_contig18027.4350.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.630e-32
Identity = 69/159 (43.40%), Postives = 103/159 (64.78%), Query Frame = 0

Query:    1 PSNFKEAVTSQHWNVRRNSMNLENDGLVETGTFEEETTLE-GNKPIDSMWSYKWKQDPDGMVIGAKATSVARGDEQIHGQNYDDTFSPTPVMSTVKTGVAVANELELDMYHFDVAQAFVQSELKDGIHLRLTEGWDTAAGKVVKLNRSIYGLKQASRTW 158
            P +++EA  S+H  V   +M+ E +GLV  GTF     +  G   ID+ W +KWK D  G ++ AKA  VA+G +Q HG +Y  TFSPT   ++++  VA+A +  L++ H D+ QAFVQ++L   + ++L  G  T +GKVV+LN+S+YGLKQASRT+
Sbjct:  167 PDSYQEARQSKHAEVWDVAMSAEFEGLVRAGTFSLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGIDYLLTFSPTANAASIRLLVALACKYNLELLHLDIEQAFVQTKLDHAVFMKLPPGCGTMSGKVVRLNKSLYGLKQASRTF 325

[Close]

BLAST of mRNA_H-paniculata_contig18027.4350.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 3.000e-32
Identity = 66/159 (41.51%), Postives = 105/159 (66.04%), Query Frame = 0

Query:    1 PSNFKEAVTSQHWNVRRNSMNLENDGLVETGTFEEETTLE-GNKPIDSMWSYKWKQDPDGMVIGAKATSVARGDEQIHGQNYDDTFSPTPVMSTVKTGVAVANELELDMYHFDVAQAFVQSELKDGIHLRLTEGWDTAAGKVVKLNRSIYGLKQASRTW 158
            P +++EA  S+H  +   +M+ E +GL+  GTF     +  G   ID+ W +KWK D  G ++ AKA  VA+G  Q +G +Y +TFSPT   ++++  VA+A + +L++ H+D+ QAFVQS+L   + ++L  G  + +GKVV+LN+S+YGLKQASRT+
Sbjct:  780 PGSYQEARQSKHAAIWDGAMSAEVEGLIRAGTFTLAVKIPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFRQKYGVDYLETFSPTANAASIRLLVALACKYDLELLHWDIEQAFVQSKLDHEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTF 938

[Close]

BLAST of mRNA_H-paniculata_contig18027.4350.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 7.240e-32
Identity = 70/171 (40.94%), Postives = 107/171 (62.57%), Query Frame = 0

Query:    1 PSNFKEAVTSQHWNVRRNSMNLENDGLVETGTFEEETTLEGNKPI-----DSMWSYKWKQDPDGMVIGAKATSVARGDEQIHGQNYDDTFSPTPVMSTVKTGVAVANELELDMYHFDVAQAFVQSELKDGIHLRLTEGWDTAAGKVVKLNRSIYGLKQASRTWNAFLTKAL 166
            P +++EA  S++  +   +M+ E +GL+  GTF    TL    PI     D+ W +KWK D  G ++ AKA  VA+G +Q +G +Y +TFSPT   ++ +  VA+A +  L++ H+D+ QAFVQSEL   + ++L  G  + +GKVV+LN+S+YGLKQASRT+   L   L
Sbjct:  448 PDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTF----TLAAKVPISCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSEL 614

[Close]

BLAST of mRNA_H-paniculata_contig18027.4350.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 7.460e-32
Identity = 70/171 (40.94%), Postives = 107/171 (62.57%), Query Frame = 0

Query:    1 PSNFKEAVTSQHWNVRRNSMNLENDGLVETGTFEEETTLEGNKPI-----DSMWSYKWKQDPDGMVIGAKATSVARGDEQIHGQNYDDTFSPTPVMSTVKTGVAVANELELDMYHFDVAQAFVQSELKDGIHLRLTEGWDTAAGKVVKLNRSIYGLKQASRTWNAFLTKAL 166
            P +++EA  S++  +   +M+ E +GL+  GTF    TL    PI     D+ W +KWK D  G ++ AKA  VA+G +Q +G +Y +TFSPT   ++ +  VA+A +  L++ H+D+ QAFVQSEL   + ++L  G  + +GKVV+LN+S+YGLKQASRT+   L   L
Sbjct:  715 PDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTF----TLAAKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSEL 881

[Close]

BLAST of mRNA_H-paniculata_contig18027.4350.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.380e-31
Identity = 62/154 (40.26%), Postives = 101/154 (65.58%), Query Frame = 0

Query:    1 PSNFKEAVTSQHWNVRRNSMNLENDGLVETGTFEEETTL-EGNKPIDSMWSYKWKQDPDGMVIGAKATSVARGDEQIHGQNYDDTFSPTPVMSTVKTGVAVANELELDMYHFDVAQAFVQSELKDGIHLRLTEGWDTAAGKVVKLNRSIYGLKQ 153
            P +++EA+ S+H  +   +M+ E +GL+  GTF     + EG   ID+ W +KWK D  G ++ AKA  VA+G +Q HG +Y +TFSPT   ++++  VA+A +  L++ H D+ QAFVQS+L   + ++L  G D+ +GK+V+LN+S+YG K+
Sbjct:  832 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGTKR 985

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig18027.4350.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig18027.4350.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5LDZ0_9PHAE	2.280e-35	42.77	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5J594_9PHAE	2.310e-35	42.77	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KHE8_9PHAE	2.320e-35	42.77	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JV80_9PHAE	1.590e-34	42.14	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JP36_9PHAE	9.320e-34	42.14	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KPV1_9PHAE	1.630e-32	43.40	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JB16_9PHAE	3.000e-32	41.51	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KKK1_9PHAE	7.240e-32	40.94	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5JRL9_9PHAE	7.460e-32	40.94	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5K622_9PHAE	1.380e-31	40.26	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 41..166 e-value: 2.8E-25 score: 89.4
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 3..166
None	No IPR available	PANTHER	PTHR11439:SF273		coord: 3..166

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig18027	contig	H-paniculata_contig18027:3657..4154 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig18027.4350.1	mRNA_H-paniculata_contig18027.4350.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig18027 3657..4154 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig18027.4350.1 ID=prot_H-paniculata_contig18027.4350.1|Name=mRNA_H-paniculata_contig18027.4350.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=166bp
PSNFKEAVTSQHWNVRRNSMNLENDGLVETGTFEEETTLEGNKPIDSMWS
YKWKQDPDGMVIGAKATSVARGDEQIHGQNYDDTFSPTPVMSTVKTGVAV
ANELELDMYHFDVAQAFVQSELKDGIHLRLTEGWDTAAGKVVKLNRSIYG
LKQASRTWNAFLTKAL

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2
IPR039537	Retrotran_Ty1/copia-like