mRNA_H-paniculata_contig180.4343.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig180.4343.1
Unique NamemRNA_H-paniculata_contig180.4343.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig180.4343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig180contigH-paniculata_contig180:40831..41285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size189
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929404.2606094-CDS-H-paniculata_contig180:40830..409371622929404.2606094-CDS-H-paniculata_contig180:40830..40937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig180 40831..40937 +
1691480846.3791091-CDS-H-paniculata_contig180:40830..409371691480846.3791091-CDS-H-paniculata_contig180:40830..40937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig180 40831..40937 +
1622929404.287867-CDS-H-paniculata_contig180:41204..412831622929404.287867-CDS-H-paniculata_contig180:41204..41283Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig180 41205..41283 +
1691480846.3898504-CDS-H-paniculata_contig180:41204..412831691480846.3898504-CDS-H-paniculata_contig180:41204..41283Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig180 41205..41283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig180.4343.1prot_H-paniculata_contig180.4343.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig180 40831..41283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig180.4343.1

>prot_H-paniculata_contig180.4343.1 ID=prot_H-paniculata_contig180.4343.1|Name=mRNA_H-paniculata_contig180.4343.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
SSAGDRDTIWSSRPLQAPTKAMIQGPPPARRAVDTGANDEPALSNDIVRN
YGLAKVRPKSTP
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mRNA from alignment at H-paniculata_contig180:40831..41285+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig180.4343.1 ID=mRNA_H-paniculata_contig180.4343.1|Name=mRNA_H-paniculata_contig180.4343.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=455bp|location=Sequence derived from alignment at H-paniculata_contig180:40831..41285+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCAGTGCAGGAGATAGGGATACTATTTGGTCGTCAAGGCCCCTCCAAGC
GCCGACCAAGGCGATGATCCAAGGCCCTCCCCCAGCTCGACGCGCCGTTG
ACACCGGGTAACGTTGGTTTCCAAGAGCTGCCGTACTTGTGTAAGAAGTC
GTCGTATGCTGTTTTCGTCTGCTGCCGGTTTACCGGTGCATCTCTACTGT
TACCAACTACAAATGAATAGCACATGATTTTCATGGCGTACCACGTTTGC
GCTGTCGTCCTTTTGTCCCTTAACCGCCTCGCACGTACTATGCCAACGGA
CTGATCCTCCCAAAAATCGTTTGAGATCACTGCACGCAAAACACACACGT
CCCTCGCCCGCCTTGGATATGCAGGGCAAACGACGAACCAGCACTCAGCA
ATGATATAGTTCGCAACTATGGCCTCGCAAAGGTTCGGCCAAAATCCACG
CCTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig180:40831..41285+

>mRNA_H-paniculata_contig180.4343.1 ID=mRNA_H-paniculata_contig180.4343.1|Name=mRNA_H-paniculata_contig180.4343.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig180:40831..41285+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCAGTGCAGGAGATAGGGATACTATTTGGTCGTCAAGGCCCCTCCAAGC
GCCGACCAAGGCGATGATCCAAGGCCCTCCCCCAGCTCGACGCGCCGTTG
ACACCGGAGCAGTGCAGGAGATAGGGATACTATTTGGTCGTCAAGGCCCC
TCCAAGCGCCGACCAAGGCGATGATCCAAGGCCCTCCCCCAGCTCGACGC
GCCGTTGACACCGGGGCAAACGACGAACCAGCACTCAGCAATGATATAGT
TCGCAACTATGGCCTCGCAAAGGTTCGGCCAAAATCCACGCCTGGCAAAC
GACGAACCAGCACTCAGCAATGATATAGTTCGCAACTATGGCCTCGCAAA
GGTTCGGCCAAAATCCACGCCT
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