mRNA_H-paniculata_contig17998.4339.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17998.4339.1
Unique NamemRNA_H-paniculata_contig17998.4339.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17998.4339.1 vs. uniprot
Match: A0A6H5KKJ6_9PHAE (SMK-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ6_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 4.240e-23
Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:   22 QVLPIPDEEVVQRIHQNFRVMFLKDALLRPMMDDTVVSTLNSLTYFNNTEILRR 183
            QVLPIPDEEVVQ+IHQNFR+ FLKDALLRPMMDD VV TLNSLTYFNNTEI++R
Sbjct:  341 QVLPIPDEEVVQKIHQNFRITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIVQR 394
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BLAST of mRNA_H-paniculata_contig17998.4339.1 vs. uniprot
Match: D7FI53_ECTSI (SMK-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI53_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.950e-22
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:   22 QVLPIPDEEVVQRIHQNFRVMFLKDALLRPMMDDTVVSTLNSLTYFNNTEILR 180
            QVLPIPDEEVVQ+IHQNFR+ FLKDALLRPMMDD VV TLNSLTYFNNTEI++
Sbjct:  231 QVLPIPDEEVVQKIHQNFRITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIVQ 283
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BLAST of mRNA_H-paniculata_contig17998.4339.1 vs. uniprot
Match: A0A836CNC7_9STRA (Component of IIS longevity pathway SMK-1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNC7_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 5.120e-17
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   22 QVLPIPDEEVVQRIHQNFRVMFLKDALLRPMMDDTVVSTLNSLTYFNNTEIL 177
            Q+LPI D E+V RIHQNFR+ FLKD LLRPMMDD V +TL S+ YFNN  I+
Sbjct:   39 QILPIEDAEIVARIHQNFRIAFLKDTLLRPMMDDAVAATLTSVAYFNNGAIV 90
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BLAST of mRNA_H-paniculata_contig17998.4339.1 vs. uniprot
Match: A0A7S3YI92_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YI92_HETAK)

HSP 1 Score: 73.6 bits (179), Expect = 1.150e-13
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:   22 QVLPIPDEEVVQRIHQNFRVMFLKDALLRPMMDDTVVSTLNSLTYFNNTEILR 180
            QVLPI D E+  +I QNFR+ FL+D LLRPMMDD   STL+SL +FNN+EIL+
Sbjct:  238 QVLPIEDPELGAKIRQNFRISFLRDVLLRPMMDDAYASTLSSLAFFNNSEILQ 290
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BLAST of mRNA_H-paniculata_contig17998.4339.1 vs. uniprot
Match: A0A7S1BYS3_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BYS3_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.200e-10
Identity = 25/53 (47.17%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:   25 VLPIPDEEVVQRIHQNFRVMFLKDALLRPMMDDTVVSTLNSLTYFNNTEILRR 183
            V+P+ DEE++  IH++FR+ +LKD +LRP+ D++ +STLNS+  F++ E++RR
Sbjct:  135 VIPMEDEELISSIHRSFRINYLKDTILRPLTDESALSTLNSMLIFSHAEVVRR 187
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BLAST of mRNA_H-paniculata_contig17998.4339.1 vs. uniprot
Match: A0A7S1G0C0_9STRA (Hypothetical protein n=9 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G0C0_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.210e-10
Identity = 25/53 (47.17%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:   25 VLPIPDEEVVQRIHQNFRVMFLKDALLRPMMDDTVVSTLNSLTYFNNTEILRR 183
            V+P+ DEE++  IH++FR+ +LKD +LRP+ D++ +STLNS+  F++ E++RR
Sbjct:  135 VIPMEDEELISSIHRSFRINYLKDTILRPLTDESALSTLNSMLIFSHAEVVRR 187
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BLAST of mRNA_H-paniculata_contig17998.4339.1 vs. uniprot
Match: A0A7S3FH67_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FH67_9VIRI)

HSP 1 Score: 62.8 bits (151), Expect = 7.000e-10
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   22 QVLPIPDEEVVQRIHQNFRVMFLKDALLRPMMDDTVVSTLNSLTYFNNTEILRRQEEERNAMP 210
            QV+PI +EEVV RIHQ FRV +LKD +L  ++DD   STL+S+  FN  EIL   + +   +P
Sbjct:  184 QVVPIANEEVVARIHQTFRVGYLKDVVLPRVLDDHAYSTLSSIMLFNYVEILTAFQRDNEVLP 246
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BLAST of mRNA_H-paniculata_contig17998.4339.1 vs. uniprot
Match: A0A7S0LTM9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LTM9_9EUKA)

HSP 1 Score: 61.2 bits (147), Expect = 1.390e-9
Identity = 24/52 (46.15%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:   22 QVLPIPDEEVVQRIHQNFRVMFLKDALLRPMMDDTVVSTLNSLTYFNNTEIL 177
            QV+PI D+ ++++IHQN+R+ FLKD +L  ++DD   + LN +T+FNN +I+
Sbjct:   67 QVVPIADDTILKKIHQNYRLSFLKDVVLPRVLDDHTFAALNQITFFNNMQII 118
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BLAST of mRNA_H-paniculata_contig17998.4339.1 vs. uniprot
Match: L8H1Z6_ACACA (SMK-1 domain-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H1Z6_ACACA)

HSP 1 Score: 60.8 bits (146), Expect = 3.750e-9
Identity = 23/52 (44.23%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:   22 QVLPIPDEEVVQRIHQNFRVMFLKDALLRPMMDDTVVSTLNSLTYFNNTEIL 177
            +V+PI + +++++IHQ FR+ +LKD +L  ++DD   +T+NS+ YFNN EI+
Sbjct:  251 EVVPIRNADILKKIHQTFRIQYLKDVILPRLLDDMTFATINSIIYFNNVEIV 302
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BLAST of mRNA_H-paniculata_contig17998.4339.1 vs. uniprot
Match: A0A7S0JCV2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JCV2_9EUKA)

HSP 1 Score: 60.1 bits (144), Expect = 7.000e-9
Identity = 24/52 (46.15%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   22 QVLPIPDEEVVQRIHQNFRVMFLKDALLRPMMDDTVVSTLNSLTYFNNTEIL 177
            +V+PI DE ++++IHQN+R+ FLKD +L   +DD   + LN +T+FNN +I+
Sbjct:  259 EVVPINDEAILKKIHQNYRLSFLKDVVLPRALDDHAFAALNQITFFNNMQII 310
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17998.4339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKJ6_9PHAE4.240e-2387.04SMK-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FI53_ECTSI1.950e-2286.79SMK-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A836CNC7_9STRA5.120e-1767.31Component of IIS longevity pathway SMK-1-domain-co... [more]
A0A7S3YI92_HETAK1.150e-1364.15Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1BYS3_9STRA1.200e-1047.17Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S1G0C0_9STRA1.210e-1047.17Hypothetical protein n=9 Tax=Corethron hystrix Tax... [more]
A0A7S3FH67_9VIRI7.000e-1049.21Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A7S0LTM9_9EUKA1.390e-946.15Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
L8H1Z6_ACACA3.750e-944.23SMK-1 domain-containing protein n=1 Tax=Acanthamoe... [more]
A0A7S0JCV2_9EUKA7.000e-946.15Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17998contigH-paniculata_contig17998:879..1088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue9.4e-19
Seed eggNOG ortholog2880.D7FI53
Preferred nameSMEK2
KEGG koko:K17491
KEGG Pathwayko04212,ko04922,map04212,map04922
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000228,GO:0000775,GO:0000785,GO:0000790,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005938,GO:0006109,GO:0006111,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006464,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006935,GO:0006950,GO:0006952,GO:0006974,GO:0007049,GO:0007063,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0007399,GO:0007405,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0008287,GO:0008356,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010165,GO:0010212,GO:0010564,GO:0010604,GO:0010639,GO:0010646,GO:0010648,GO:0010675,GO:0010676,GO:0010906,GO:0010907,GO:0010921,GO:0010948,GO:0015630,GO:0016311,GO:0016604,GO:0016607,GO:0017145,GO:0019208,GO:0019211,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019888,GO:0022008,GO:0022402,GO:0022414,GO:0023051,GO:0023052,GO:0023057,GO:0030154,GO:0030234,GO:0030289,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033313,GO:0033554,GO:0034641,GO:0035303,GO:0035304,GO:0035556,GO:0036211,GO:0036445,GO:0040011,GO:0040020,GO:0042221,GO:0042330,GO:0042742,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043255,GO:0043327,GO:0043412,GO:0043666,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045165,GO:0045175,GO:0045722,GO:0045739,GO:0045786,GO:0045787,GO:0045835,GO:0045875,GO:0045913,GO:0045930,GO:0045931,GO:0045935,GO:0046483,GO:0048103,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051246,GO:0051301,GO:0051321,GO:0051336,GO:0051445,GO:0051447,GO:0051598,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0055057,GO:0055059,GO:0060255,GO:0061351,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071944,GO:0072089,GO:0072395,GO:0072411,GO:0072462,GO:0072542,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0098542,GO:0098687,GO:0098722,GO:0098772,GO:0099568,GO:1901360,GO:1901564,GO:1901976,GO:1901977,GO:1902494,GO:1902659,GO:1902660,GO:1903046,GO:1903293,GO:1904289,GO:1904290,GO:2000001,GO:2000002,GO:2000241,GO:2000242,GO:2000779,GO:2000781,GO:2001020,GO:2001021,GO:2001022,GO:2001032,GO:2001034,GO:2001251
EggNOG free text desc.signal transduction involved in meiotic cell cycle checkpoint
EggNOG OGsKOG2175@1,KOG2175@2759
Ec32 ortholog descriptionDomain of unknown function DUF625
Ec32 orthologEc-10_003590.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03400
Exons1
Model size210
Cds size210
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929403.7703903-CDS-H-paniculata_contig17998:878..10881622929403.7703903-CDS-H-paniculata_contig17998:878..1088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17998 879..1088 -
1691480846.1353924-CDS-H-paniculata_contig17998:878..10881691480846.1353924-CDS-H-paniculata_contig17998:878..1088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17998 879..1088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17998.4339.1prot_H-paniculata_contig17998.4339.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17998 879..1088 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17998.4339.1

>prot_H-paniculata_contig17998.4339.1 ID=prot_H-paniculata_contig17998.4339.1|Name=mRNA_H-paniculata_contig17998.4339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MLFGACAQVLPIPDEEVVQRIHQNFRVMFLKDALLRPMMDDTVVSTLNSL
TYFNNTEILRRQEEERNAMP
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mRNA from alignment at H-paniculata_contig17998:879..1088-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17998.4339.1 ID=mRNA_H-paniculata_contig17998.4339.1|Name=mRNA_H-paniculata_contig17998.4339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at H-paniculata_contig17998:879..1088- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCTTTGGCGCGTGTGCCCAGGTGCTGCCGATCCCCGACGAGGAAGT
GGTGCAGCGGATTCACCAAAATTTTCGAGTAATGTTCCTGAAGGACGCCC
TGCTTCGGCCGATGATGGACGACACGGTCGTGAGCACCCTTAACTCTCTC
ACCTATTTCAATAACACAGAGATCCTCCGAAGGCAAGAGGAGGAGAGGAA
TGCAATGCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig17998:879..1088-

>mRNA_H-paniculata_contig17998.4339.1 ID=mRNA_H-paniculata_contig17998.4339.1|Name=mRNA_H-paniculata_contig17998.4339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig17998:879..1088- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCTTTGGCGCGTGTGCCCAGGTGCTGCCGATCCCCGACGAGGAAGT
GGTGCAGCGGATTCACCAAAATTTTCGAGTAATGTTCCTGAAGGACGCCC
TGCTTCGGCCGATGATGGACGACACGGTCGTGAGCACCCTTAACTCTCTC
ACCTATTTCAATAACACAGAGATCCTCCGAAGGCAAGAGGAGGAGAGGAA
TGCAATGCCGATGCTCTTTGGCGCGTGTGCCCAGGTGCTGCCGATCCCCG
ACGAGGAAGTGGTGCAGCGGATTCACCAAAATTTTCGAGTAATGTTCCTG
AAGGACGCCCTGCTTCGGCCGATGATGGACGACACGGTCGTGAGCACCCT
TAACTCTCTCACCTATTTCAATAACACAGAGATCCTCCGAAGGCAAGAGG
AGGAGAGGAATGCAATGCCG
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