mRNA_H-paniculata_contig17987.4335.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17987.4335.1
Unique NamemRNA_H-paniculata_contig17987.4335.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17987.4335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17987contigH-paniculata_contig17987:4046..4657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size357
Cds size213
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17987.4335.1prot_H-paniculata_contig17987.4335.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17987 4046..4513 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929403.417666-CDS-H-paniculata_contig17987:4045..41051622929403.417666-CDS-H-paniculata_contig17987:4045..4105Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17987 4046..4105 -
1691480845.9448376-CDS-H-paniculata_contig17987:4045..41051691480845.9448376-CDS-H-paniculata_contig17987:4045..4105Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17987 4046..4105 -
1622929403.4326017-CDS-H-paniculata_contig17987:4360..45131622929403.4326017-CDS-H-paniculata_contig17987:4360..4513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17987 4361..4513 -
1691480845.9530013-CDS-H-paniculata_contig17987:4360..45131691480845.9530013-CDS-H-paniculata_contig17987:4360..4513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17987 4361..4513 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929403.445084-UTR-H-paniculata_contig17987:4513..46571622929403.445084-UTR-H-paniculata_contig17987:4513..4657Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17987 4514..4657 -
1691480845.9626083-UTR-H-paniculata_contig17987:4513..46571691480845.9626083-UTR-H-paniculata_contig17987:4513..4657Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17987 4514..4657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17987.4335.1

>prot_H-paniculata_contig17987.4335.1 ID=prot_H-paniculata_contig17987.4335.1|Name=mRNA_H-paniculata_contig17987.4335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
MADGAAGSCRPVTCSSSHKVAVRGWMTRAAVLLVFQLLLDQQQDVVLGAR
PIKEQAGVGKAWAQNRGSNQ*
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mRNA from alignment at H-paniculata_contig17987:4046..4657-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17987.4335.1 ID=mRNA_H-paniculata_contig17987.4335.1|Name=mRNA_H-paniculata_contig17987.4335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=612bp|location=Sequence derived from alignment at H-paniculata_contig17987:4046..4657- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTTGAGTAGCTTGATTTTTATTATTAATAGACTGAATCTTCATTTGAG
TTTTTGGGGTTTTGAGTGTTAAAAAGAACACAAAATATGATGCCTCCCAT
GAAAGGTTTCCGTTGACCTGCATTGATCTGTCCGAGCGAAGAGTATGGCA
GATGGTGCGGCGGGCAGCTGCAGGCCTGTAACATGTAGTTCAAGCCATAA
GGTGGCGGTCCGAGGATGGATGACCAGGGCGGCCGTTCTCCTAGTCTTTC
AGCTGCTGCTGGACCAGCAGCAGGACGTGGTCCTTGGCGCTCGGCCGGTC
AGATCTAATCGTAGTCATATACTTAAGGGCGTTTGGGGTATTGTGTCTAG
GCGTGAGGCACAGCCATTCCGGGGCGGGGAGAGGAAAGGTGTAGAAAGGT
GTAGAAAAGCGTAGTGACTAAAGAGGGGCGTACTCATGTACACCCATCTG
ACTCAATGTAAGATCTGCCTCAACCAAACATGCCAACCATATATAAACTC
CATGAAACCGAATAATCACGTAACCGTCGCTTTATCAATCATACCCAACA
AGATCAAAGAGCAAGCAGGAGTCGGCAAAGCCTGGGCGCAAAATCGAGGC
AGCAACCAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig17987:4046..4657-

>mRNA_H-paniculata_contig17987.4335.1 ID=mRNA_H-paniculata_contig17987.4335.1|Name=mRNA_H-paniculata_contig17987.4335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig17987:4046..4657- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAGATGGTGCGGCGGGCAGCTGCAGGCCTGTAACATGTAGTTCAAG
CCATAAGGTGGCGGTCCGAGGATGGATGACCAGGGCGGCCGTTCTCCTAG
TCTTTCAGCTGCTGCTGGACCAGCAGCAGGACGTGGTCCTTGGCGCTCGG
CCGATGGCAGATGGTGCGGCGGGCAGCTGCAGGCCTGTAACATGTAGTTC
AAGCCATAAGGTGGCGGTCCGAGGATGGATGACCAGGGCGGCCGTTCTCC
TAGTCTTTCAGCTGCTGCTGGACCAGCAGCAGGACGTGGTCCTTGGCGCT
CGGCCGATCAAAGAGCAAGCAGGAGTCGGCAAAGCCTGGGCGCAAAATCG
AGGCAGCAACCAGTGAATCAAAGAGCAAGCAGGAGTCGGCAAAGCCTGGG
CGCAAAATCGAGGCAGCAACCAGTGA
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