mRNA_H-paniculata_contig17987.4334.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17987.4334.1
Unique NamemRNA_H-paniculata_contig17987.4334.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17987.4334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17987contigH-paniculata_contig17987:2442..2905 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929403.3676665-CDS-H-paniculata_contig17987:2441..26251622929403.3676665-CDS-H-paniculata_contig17987:2441..2625Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17987 2442..2625 -
1691480845.9290655-CDS-H-paniculata_contig17987:2441..26251691480845.9290655-CDS-H-paniculata_contig17987:2441..2625Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17987 2442..2625 -
1622929403.3854158-CDS-H-paniculata_contig17987:2840..29051622929403.3854158-CDS-H-paniculata_contig17987:2840..2905Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17987 2841..2905 -
1691480845.9370184-CDS-H-paniculata_contig17987:2840..29051691480845.9370184-CDS-H-paniculata_contig17987:2840..2905Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17987 2841..2905 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17987.4334.1prot_H-paniculata_contig17987.4334.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17987 2442..2905 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17987.4334.1

>prot_H-paniculata_contig17987.4334.1 ID=prot_H-paniculata_contig17987.4334.1|Name=mRNA_H-paniculata_contig17987.4334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
NVVHGTSFQDCARGRRQALLARHTDNINANGTMRPIRAGIASPHAALRVP
VTFEGPAAAPAQSWLLALPPSYRMVPANNSEG*
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mRNA from alignment at H-paniculata_contig17987:2442..2905-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17987.4334.1 ID=mRNA_H-paniculata_contig17987.4334.1|Name=mRNA_H-paniculata_contig17987.4334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=464bp|location=Sequence derived from alignment at H-paniculata_contig17987:2442..2905- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGTAGTTCACGGAACGAGCTTTCAAGACTGCGCAAGGGGGAGAAGGCA
AGCGCTTTTAGCGAGGTACCACGAAATGAGATGAAGTTCTACAATGCACA
TAGCACATCGATGTGTCGATCAGACTTTTGGTCTTTGCTTTGCTTGTCGT
AAGACTTGTTTGACTGAATATGTTTTCTTCTGCGAGTAACTCCCCACTTT
ACTTCGAATTTTCTGTGTTCTTGCTTCCCGACACTAACCGGCGGCGATTT
TATACATGTTTTGTTTTCGCCATCGGCAAGGCACACTGACAACATCAATG
CGAACGGGACGATGCGACCGATCAGAGCAGGAATTGCATCTCCACACGCC
GCCCTTCGCGTTCCCGTCACCTTTGAAGGTCCAGCAGCAGCACCAGCGCA
GTCGTGGTTACTAGCCCTGCCACCATCTTACCGGATGGTACCAGCAAACA
ATAGCGAGGGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig17987:2442..2905-

>mRNA_H-paniculata_contig17987.4334.1 ID=mRNA_H-paniculata_contig17987.4334.1|Name=mRNA_H-paniculata_contig17987.4334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig17987:2442..2905- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGTAGTTCACGGAACGAGCTTTCAAGACTGCGCAAGGGGGAGAAGGCA
AGCGCTTTTAGCGAGAATGTAGTTCACGGAACGAGCTTTCAAGACTGCGC
AAGGGGGAGAAGGCAAGCGCTTTTAGCGAGGCACACTGACAACATCAATG
CGAACGGGACGATGCGACCGATCAGAGCAGGAATTGCATCTCCACACGCC
GCCCTTCGCGTTCCCGTCACCTTTGAAGGTCCAGCAGCAGCACCAGCGCA
GTCGTGGTTACTAGCCCTGCCACCATCTTACCGGATGGTACCAGCAAACA
ATAGCGAGGGGTGAGCACACTGACAACATCAATGCGAACGGGACGATGCG
ACCGATCAGAGCAGGAATTGCATCTCCACACGCCGCCCTTCGCGTTCCCG
TCACCTTTGAAGGTCCAGCAGCAGCACCAGCGCAGTCGTGGTTACTAGCC
CTGCCACCATCTTACCGGATGGTACCAGCAAACAATAGCGAGGGGTGA
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