prot_H-paniculata_contig17977.4330.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig17977.4330.1
Unique Name	prot_H-paniculata_contig17977.4330.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	108

Homology

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BLAST of mRNA_H-paniculata_contig17977.4330.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 9.650e-30
Identity = 53/106 (50.00%), Postives = 70/106 (66.04%), Query Frame = 0

Query:    1 YLLVLLDDVSGYVWLEPSLECTAKVAAATALKWCTVFGAPGVFVSDTARHFKNPLVSLLATALAAEHRFSVVNSAWSNGAVEHINREVVNTFKVVMNKANRPVREW 106
            YLLV++DD+S + W+EP+  CTA++ A   L WC   G P V+VSDTA HFKN ++  L  AL  E RF+V NS WSNG  E + REVV T K V+ +  R +R+W
Sbjct:   67 YLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREVVRTMKAVLQERRRNLRDW 172

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BLAST of mRNA_H-paniculata_contig17977.4330.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 2.460e-29
Identity = 53/106 (50.00%), Postives = 70/106 (66.04%), Query Frame = 0

Query:    1 YLLVLLDDVSGYVWLEPSLECTAKVAAATALKWCTVFGAPGVFVSDTARHFKNPLVSLLATALAAEHRFSVVNSAWSNGAVEHINREVVNTFKVVMNKANRPVREW 106
            YLLV++DD+S + W+EP+  CTA++ A   L WC   G P V+VSDTA HFKN ++  L  AL  E RF+V NS WSNG  E + RE+V T K V+ +  R VR+W
Sbjct:  514 YLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDW 619

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BLAST of mRNA_H-paniculata_contig17977.4330.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 2.650e-29
Identity = 53/106 (50.00%), Postives = 70/106 (66.04%), Query Frame = 0

Query:    1 YLLVLLDDVSGYVWLEPSLECTAKVAAATALKWCTVFGAPGVFVSDTARHFKNPLVSLLATALAAEHRFSVVNSAWSNGAVEHINREVVNTFKVVMNKANRPVREW 106
            YLLV++DD+S + W+EP+  CTA++ A   L WC   G P V+VSDTA HFKN ++  L  AL  E RF+V NS WSNG  E + RE+V T K V+ +  R VR+W
Sbjct: 1290 YLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDW 1395

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BLAST of mRNA_H-paniculata_contig17977.4330.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.110e-27
Identity = 52/106 (49.06%), Postives = 70/106 (66.04%), Query Frame = 0

Query:    1 YLLVLLDDVSGYVWLEPSLECTAKVAAATALKWCTVFGAPGVFVSDTARHFKNPLVSLLATALAAEHRFSVVNSAWSNGAVEHINREVVNTFKVVMNKANRPVREW 106
            Y+LV++DD+S +VWLEP+  CTA + A   L WC + G P V+VSDTA HFKN +++ L TAL  +  FSV NS WSNG  E + REVV T K ++ +     R+W
Sbjct: 1392 YILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSDTASHFKNHMMAALETALGVDRNFSVANSPWSNGTCERMMREVVRTLKAMIQEERGRTRDW 1497

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BLAST of mRNA_H-paniculata_contig17977.4330.1 vs. uniprot
Match: A0A6A3FYG6_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3FYG6_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.330e-18
Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 0

Query:    1 YLLVLLDDVSGYVWLEPSLECTAKVAAATALKWCTVFGAPGVFVSDTARHFKNPLVSLLATALAAEHRFSVVNSAWSNGAVEHINREVVNTFKVVMNKANRPVREWP 107
            Y+LVL D++SGYV L      TA       + W   FG    +VSD   HF+N ++  L  AL A+H F+   + W+NG VE +NRE++   K ++++   PVR+WP
Sbjct:   10 YVLVLKDNMSGYVELIACPNPTADYVYTGLMDWFKRFGVVLQWVSDQGAHFRNQVIERLQRALGAQHHFTTAYTPWANGTVEVVNRELLRAVKALLSERQLPVRDWP 116

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BLAST of mRNA_H-paniculata_contig17977.4330.1 vs. uniprot
Match: A0A6G0LXB2_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0LXB2_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 4.220e-18
Identity = 40/107 (37.38%), Postives = 62/107 (57.94%), Query Frame = 0

Query:    1 YLLVLLDDVSGYVWLEPSLECTAKVAAATALKWCTVFGAPGVFVSDTARHFKNPLVSLLATALAAEHRFSVVNSAWSNGAVEHINREVVNTFKVVMNKANRPVREWP 107
            Y+L+L D++SGYV L   ++ T+     + L W   FG    +VSD   HF+N +++ L  AL A H F+   + W+NG VE +NREV+   K +++K    V +WP
Sbjct:   10 YVLLLKDNMSGYVELVACVQATSDEVYQSLLDWFKRFGVVRQWVSDQGAHFRNRVIAELQRALGAHHHFTTAYTLWANGTVEVVNREVLKAVKALLSKRRLRVEDWP 116

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BLAST of mRNA_H-paniculata_contig17977.4330.1 vs. uniprot
Match: A0A6A3V3Z3_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3V3Z3_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.610e-17
Identity = 40/107 (37.38%), Postives = 61/107 (57.01%), Query Frame = 0

Query:    1 YLLVLLDDVSGYVWLEPSLECTAKVAAATALKWCTVFGAPGVFVSDTARHFKNPLVSLLATALAAEHRFSVVNSAWSNGAVEHINREVVNTFKVVMNKANRPVREWP 107
            Y+LVL D++SGYV L   ++ T+     + L W   FG    +VSD   HF+N + + L  AL A H F+   + W+NG VE +NREV+   K ++++    V +WP
Sbjct:   41 YVLVLKDNMSGYVELVACVQATSDEVYQSLLDWFKRFGVVRQWVSDQGAHFRNQVFAELQRALGAHHHFTTAYTPWANGTVEVVNREVLKAVKALLSERRLRVEDWP 147

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BLAST of mRNA_H-paniculata_contig17977.4330.1 vs. uniprot
Match: A0A6G0NWT8_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NWT8_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 3.920e-17
Identity = 40/107 (37.38%), Postives = 62/107 (57.94%), Query Frame = 0

Query:    1 YLLVLLDDVSGYVWLEPSLECTAKVAAATALKWCTVFGAPGVFVSDTARHFKNPLVSLLATALAAEHRFSVVNSAWSNGAVEHINREVVNTFKVVMNKANRPVREWP 107
            Y+L+L D++SGYV L   ++ T+     + L W   FG    +VSD   HF+N +++ L  AL A H F+   + W+NG VE +NREV+   K +++K    V +WP
Sbjct:   10 YVLLLKDNMSGYVELVACVQATSDEVYQSLLDWFKRFGVVRQWVSDQGAHFRNRVIAELQRALGAHHHFTTAYTLWANGTVEVVNREVLKAVKALLSKRRLRVEDWP 116

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BLAST of mRNA_H-paniculata_contig17977.4330.1 vs. uniprot
Match: A0A6A3EJ81_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3EJ81_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 4.490e-17
Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 0

Query:    1 YLLVLLDDVSGYVWLEPSLECTAKVAAATALKWCTVFGAPGVFVSDTARHFKNPLVSLLATALAAEHRFSVVNSAWSNGAVEHINREVVNTFKVVMNKANRPVREWP 107
            Y+LVL D++SGYV L      TA       + W   FG    +VSD   HF+N ++  L  AL A+H F+   + W+NG VE +NRE++   K ++++   PVR+WP
Sbjct:   10 YVLVLKDNMSGYVELIACPNPTADYVYTGLMDWFKRFGVVLQWVSDQGAHFRNQVIERLQRALGAQHHFTTAYTPWANGTVEVVNRELLRAVKALLSERQLPVRDWP 116

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BLAST of mRNA_H-paniculata_contig17977.4330.1 vs. uniprot
Match: A0A6A3GX76_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GX76_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.850e-17
Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 0

Query:    1 YLLVLLDDVSGYVWLEPSLECTAKVAAATALKWCTVFGAPGVFVSDTARHFKNPLVSLLATALAAEHRFSVVNSAWSNGAVEHINREVVNTFKVVMNKANRPVREWP 107
            Y+LVL D++SGYV L      TA       + W   FG    +VSD   HF+N ++  L  AL A+H F+   + W+NG VE +NRE++   K ++++   PVR+WP
Sbjct:  321 YVLVLKDNMSGYVGLIACPNPTADYVYTGLMDWFKRFGVVLQWVSDQGAHFRNQVIERLQRALGAQHHFTTAYTPWANGTVEVVNRELLRAVKALLSERQLPVRDWP 427

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig17977.4330.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig17977.4330.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JVS6_9PHAE	9.650e-30	50.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JCX8_9PHAE	2.460e-29	50.00	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5L7F6_9PHAE	2.650e-29	50.00	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K5A5_9PHAE	1.110e-27	49.06	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6A3FYG6_9STRA	1.330e-18	38.32	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6G0LXB2_9STRA	4.220e-18	37.38	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6A3V3Z3_9STRA	2.610e-17	37.38	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6G0NWT8_9STRA	3.920e-17	37.38	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6A3EJ81_9STRA	4.490e-17	38.32	Uncharacterized protein n=1 Tax=Phytophthora fraga...	[more]
A0A6A3GX76_9STRA	4.850e-17	38.32	Uncharacterized protein (Fragment) n=2 Tax=Phytoph...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 1..90 e-value: 4.4E-9 score: 36.6
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..108 score: 12.227
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..107 e-value: 4.2E-18 score: 67.2
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..106

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig17977	contig	H-paniculata_contig17977:73..396 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig17977.4330.1	mRNA_H-paniculata_contig17977.4330.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig17977 73..396 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig17977.4330.1 ID=prot_H-paniculata_contig17977.4330.1|Name=mRNA_H-paniculata_contig17977.4330.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
YLLVLLDDVSGYVWLEPSLECTAKVAAATALKWCTVFGAPGVFVSDTARH
FKNPLVSLLATALAAEHRFSVVNSAWSNGAVEHINREVVNTFKVVMNKAN
RPVREWPV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001584	Integrase_cat-core
IPR036397	RNaseH_sf
IPR012337	RNaseH-like_sf