mRNA_H-paniculata_contig17977.4330.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17977.4330.1
Unique NamemRNA_H-paniculata_contig17977.4330.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17977.4330.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 9.650e-30
Identity = 53/106 (50.00%), Postives = 70/106 (66.04%), Query Frame = 1 
Query:    1 YLLVLLDDVSGYVWLEPSLECTAKVAAATALKWCTVFGAPGVFVSDTARHFKNPLVSLLATALAAEHRFSVVNSAWSNGAVEHINREVVNTFKVVMNKANRPVREW 318
            YLLV++DD+S + W+EP+  CTA++ A   L WC   G P V+VSDTA HFKN ++  L  AL  E RF+V NS WSNG  E + REVV T K V+ +  R +R+W
Sbjct:   67 YLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREVVRTMKAVLQERRRNLRDW 172
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BLAST of mRNA_H-paniculata_contig17977.4330.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 2.460e-29
Identity = 53/106 (50.00%), Postives = 70/106 (66.04%), Query Frame = 1 
Query:    1 YLLVLLDDVSGYVWLEPSLECTAKVAAATALKWCTVFGAPGVFVSDTARHFKNPLVSLLATALAAEHRFSVVNSAWSNGAVEHINREVVNTFKVVMNKANRPVREW 318
            YLLV++DD+S + W+EP+  CTA++ A   L WC   G P V+VSDTA HFKN ++  L  AL  E RF+V NS WSNG  E + RE+V T K V+ +  R VR+W
Sbjct:  514 YLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDW 619
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BLAST of mRNA_H-paniculata_contig17977.4330.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 2.650e-29
Identity = 53/106 (50.00%), Postives = 70/106 (66.04%), Query Frame = 1 
Query:    1 YLLVLLDDVSGYVWLEPSLECTAKVAAATALKWCTVFGAPGVFVSDTARHFKNPLVSLLATALAAEHRFSVVNSAWSNGAVEHINREVVNTFKVVMNKANRPVREW 318
            YLLV++DD+S + W+EP+  CTA++ A   L WC   G P V+VSDTA HFKN ++  L  AL  E RF+V NS WSNG  E + RE+V T K V+ +  R VR+W
Sbjct: 1290 YLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDW 1395
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BLAST of mRNA_H-paniculata_contig17977.4330.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.110e-27
Identity = 52/106 (49.06%), Postives = 70/106 (66.04%), Query Frame = 1 
Query:    1 YLLVLLDDVSGYVWLEPSLECTAKVAAATALKWCTVFGAPGVFVSDTARHFKNPLVSLLATALAAEHRFSVVNSAWSNGAVEHINREVVNTFKVVMNKANRPVREW 318
            Y+LV++DD+S +VWLEP+  CTA + A   L WC + G P V+VSDTA HFKN +++ L TAL  +  FSV NS WSNG  E + REVV T K ++ +     R+W
Sbjct: 1392 YILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSDTASHFKNHMMAALETALGVDRNFSVANSPWSNGTCERMMREVVRTLKAMIQEERGRTRDW 1497
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BLAST of mRNA_H-paniculata_contig17977.4330.1 vs. uniprot
Match: A0A6A3FYG6_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3FYG6_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.330e-18
Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 1 
Query:    1 YLLVLLDDVSGYVWLEPSLECTAKVAAATALKWCTVFGAPGVFVSDTARHFKNPLVSLLATALAAEHRFSVVNSAWSNGAVEHINREVVNTFKVVMNKANRPVREWP 321
            Y+LVL D++SGYV L      TA       + W   FG    +VSD   HF+N ++  L  AL A+H F+   + W+NG VE +NRE++   K ++++   PVR+WP
Sbjct:   10 YVLVLKDNMSGYVELIACPNPTADYVYTGLMDWFKRFGVVLQWVSDQGAHFRNQVIERLQRALGAQHHFTTAYTPWANGTVEVVNRELLRAVKALLSERQLPVRDWP 116
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BLAST of mRNA_H-paniculata_contig17977.4330.1 vs. uniprot
Match: A0A6G0LXB2_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0LXB2_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 4.220e-18
Identity = 40/107 (37.38%), Postives = 62/107 (57.94%), Query Frame = 1 
Query:    1 YLLVLLDDVSGYVWLEPSLECTAKVAAATALKWCTVFGAPGVFVSDTARHFKNPLVSLLATALAAEHRFSVVNSAWSNGAVEHINREVVNTFKVVMNKANRPVREWP 321
            Y+L+L D++SGYV L   ++ T+     + L W   FG    +VSD   HF+N +++ L  AL A H F+   + W+NG VE +NREV+   K +++K    V +WP
Sbjct:   10 YVLLLKDNMSGYVELVACVQATSDEVYQSLLDWFKRFGVVRQWVSDQGAHFRNRVIAELQRALGAHHHFTTAYTLWANGTVEVVNREVLKAVKALLSKRRLRVEDWP 116
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BLAST of mRNA_H-paniculata_contig17977.4330.1 vs. uniprot
Match: A0A6A3V3Z3_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3V3Z3_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.610e-17
Identity = 40/107 (37.38%), Postives = 61/107 (57.01%), Query Frame = 1 
Query:    1 YLLVLLDDVSGYVWLEPSLECTAKVAAATALKWCTVFGAPGVFVSDTARHFKNPLVSLLATALAAEHRFSVVNSAWSNGAVEHINREVVNTFKVVMNKANRPVREWP 321
            Y+LVL D++SGYV L   ++ T+     + L W   FG    +VSD   HF+N + + L  AL A H F+   + W+NG VE +NREV+   K ++++    V +WP
Sbjct:   41 YVLVLKDNMSGYVELVACVQATSDEVYQSLLDWFKRFGVVRQWVSDQGAHFRNQVFAELQRALGAHHHFTTAYTPWANGTVEVVNREVLKAVKALLSERRLRVEDWP 147
[Close]
BLAST of mRNA_H-paniculata_contig17977.4330.1 vs. uniprot
Match: A0A6G0NWT8_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NWT8_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 3.920e-17
Identity = 40/107 (37.38%), Postives = 62/107 (57.94%), Query Frame = 1 
Query:    1 YLLVLLDDVSGYVWLEPSLECTAKVAAATALKWCTVFGAPGVFVSDTARHFKNPLVSLLATALAAEHRFSVVNSAWSNGAVEHINREVVNTFKVVMNKANRPVREWP 321
            Y+L+L D++SGYV L   ++ T+     + L W   FG    +VSD   HF+N +++ L  AL A H F+   + W+NG VE +NREV+   K +++K    V +WP
Sbjct:   10 YVLLLKDNMSGYVELVACVQATSDEVYQSLLDWFKRFGVVRQWVSDQGAHFRNRVIAELQRALGAHHHFTTAYTLWANGTVEVVNREVLKAVKALLSKRRLRVEDWP 116
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BLAST of mRNA_H-paniculata_contig17977.4330.1 vs. uniprot
Match: A0A6A3EJ81_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3EJ81_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 4.490e-17
Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 1 
Query:    1 YLLVLLDDVSGYVWLEPSLECTAKVAAATALKWCTVFGAPGVFVSDTARHFKNPLVSLLATALAAEHRFSVVNSAWSNGAVEHINREVVNTFKVVMNKANRPVREWP 321
            Y+LVL D++SGYV L      TA       + W   FG    +VSD   HF+N ++  L  AL A+H F+   + W+NG VE +NRE++   K ++++   PVR+WP
Sbjct:   10 YVLVLKDNMSGYVELIACPNPTADYVYTGLMDWFKRFGVVLQWVSDQGAHFRNQVIERLQRALGAQHHFTTAYTPWANGTVEVVNRELLRAVKALLSERQLPVRDWP 116
[Close]
BLAST of mRNA_H-paniculata_contig17977.4330.1 vs. uniprot
Match: A0A6A3GX76_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GX76_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.850e-17
Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 1 
Query:    1 YLLVLLDDVSGYVWLEPSLECTAKVAAATALKWCTVFGAPGVFVSDTARHFKNPLVSLLATALAAEHRFSVVNSAWSNGAVEHINREVVNTFKVVMNKANRPVREWP 321
            Y+LVL D++SGYV L      TA       + W   FG    +VSD   HF+N ++  L  AL A+H F+   + W+NG VE +NRE++   K ++++   PVR+WP
Sbjct:  321 YVLVLKDNMSGYVGLIACPNPTADYVYTGLMDWFKRFGVVLQWVSDQGAHFRNQVIERLQRALGAQHHFTTAYTPWANGTVEVVNRELLRAVKALLSERQLPVRDWP 427
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17977.4330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVS6_9PHAE9.650e-3050.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCX8_9PHAE2.460e-2950.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L7F6_9PHAE2.650e-2950.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE1.110e-2749.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A3FYG6_9STRA1.330e-1838.32Integrase catalytic domain-containing protein n=2 ... [more]
A0A6G0LXB2_9STRA4.220e-1837.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3V3Z3_9STRA2.610e-1737.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A6G0NWT8_9STRA3.920e-1737.38Integrase catalytic domain-containing protein n=2 ... [more]
A0A6A3EJ81_9STRA4.490e-1738.32Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
A0A6A3GX76_9STRA4.850e-1738.32Uncharacterized protein (Fragment) n=2 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17977contigH-paniculata_contig17977:73..396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue2.8e-14
Seed eggNOG ortholog164328.Phyra78350
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QH2U@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929402.7868412-CDS-H-paniculata_contig17977:72..3961622929402.7868412-CDS-H-paniculata_contig17977:72..396Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17977 73..396 +
1691480845.674772-CDS-H-paniculata_contig17977:72..3961691480845.674772-CDS-H-paniculata_contig17977:72..396Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17977 73..396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17977.4330.1prot_H-paniculata_contig17977.4330.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17977 73..396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17977.4330.1

>prot_H-paniculata_contig17977.4330.1 ID=prot_H-paniculata_contig17977.4330.1|Name=mRNA_H-paniculata_contig17977.4330.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
YLLVLLDDVSGYVWLEPSLECTAKVAAATALKWCTVFGAPGVFVSDTARH
FKNPLVSLLATALAAEHRFSVVNSAWSNGAVEHINREVVNTFKVVMNKAN
RPVREWPV
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mRNA from alignment at H-paniculata_contig17977:73..396+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17977.4330.1 ID=mRNA_H-paniculata_contig17977.4330.1|Name=mRNA_H-paniculata_contig17977.4330.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=324bp|location=Sequence derived from alignment at H-paniculata_contig17977:73..396+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACCTTCTCGTGTTGCTGGATGACGTCAGCGGTTACGTGTGGCTAGAGCC
GTCGCTGGAATGCACGGCGAAAGTGGCTGCCGCCACCGCGTTGAAGTGGT
GCACGGTGTTTGGAGCGCCTGGGGTTTTCGTCAGCGACACCGCCCGTCAC
TTCAAGAACCCGCTGGTGAGCCTGTTGGCGACCGCGCTGGCAGCAGAGCA
TCGCTTTTCCGTGGTCAACTCAGCGTGGTCAAACGGCGCCGTGGAGCACA
TAAATCGGGAGGTTGTGAACACCTTCAAGGTGGTGATGAACAAGGCGAAC
CGCCCGGTGAGGGAATGGCCGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig17977:73..396+

>mRNA_H-paniculata_contig17977.4330.1 ID=mRNA_H-paniculata_contig17977.4330.1|Name=mRNA_H-paniculata_contig17977.4330.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig17977:73..396+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACCTTCTCGTGTTGCTGGATGACGTCAGCGGTTACGTGTGGCTAGAGCC
GTCGCTGGAATGCACGGCGAAAGTGGCTGCCGCCACCGCGTTGAAGTGGT
GCACGGTGTTTGGAGCGCCTGGGGTTTTCGTCAGCGACACCGCCCGTCAC
TTCAAGAACCCGCTGGTGAGCCTGTTGGCGACCGCGCTGGCAGCAGAGCA
TCGCTTTTCCGTGGTCAACTCAGCGTGGTCAAACGGCGCCGTGGAGCACA
TAAATCGGGAGGTTGTGAACACCTTCAAGGTGGTGATGAACAAGGCGAAC
CGCCCGGTGAGGGAATGGCCGGTATACCTTCTCGTGTTGCTGGATGACGT
CAGCGGTTACGTGTGGCTAGAGCCGTCGCTGGAATGCACGGCGAAAGTGG
CTGCCGCCACCGCGTTGAAGTGGTGCACGGTGTTTGGAGCGCCTGGGGTT
TTCGTCAGCGACACCGCCCGTCACTTCAAGAACCCGCTGGTGAGCCTGTT
GGCGACCGCGCTGGCAGCAGAGCATCGCTTTTCCGTGGTCAACTCAGCGT
GGTCAAACGGCGCCGTGGAGCACATAAATCGGGAGGTTGTGAACACCTTC
AAGGTGGTGATGAACAAGGCGAACCGCCCGGTGAGGGAATGGCCGGTA
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