mRNA_H-paniculata_contig17973.4329.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17973.4329.1
Unique NamemRNA_H-paniculata_contig17973.4329.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17973.4329.1 vs. uniprot
Match: A0A6H5JSV9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV9_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 3.250e-26
Identity = 53/121 (43.80%), Postives = 80/121 (66.12%), Query Frame = 1 
Query:    4 FSPTVAASSVKMVIVVAVENDWRLWQLDVK*AFIQAIFNFEVFMKLPEGCGDKSGRIVRLKKAMYGLKQAGQMWSKHLVEALMDKIGMAQSKSDPCVFRLEKRGVVDMIMRVHVHDVIVSG 366
            ++PTVA+SSV+M+  +A E D  L   D+  AF++A    ++FM+LPEGCG  SG+IV+L K++YGL+QA + W   L + L+  +G  Q  +D CVF L ++G V +I+ VHV D+   G
Sbjct:   12 YAPTVASSSVRMLAALACELDLELCHFDIDQAFVRAPLKEDIFMRLPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLL-ALGFEQCMADSCVFSLVEKGEVVLILAVHVDDIFAVG 131
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BLAST of mRNA_H-paniculata_contig17973.4329.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.490e-25
Identity = 57/122 (46.72%), Postives = 82/122 (67.21%), Query Frame = 1 
Query:    1 TFSPTVAASSVKMVIVVAVENDWRLWQLDVK*AFIQAIFNFEVFMKLPEGCGDKSGRIVRLKKAMYGLKQAGQMWSKHLVEALMDKIGMAQSKSDPCVFRLEKRGVVDMIMRVHVHDVIVSG 366
            TFSPT  A+S+++V+ +A + +  L  LD++ AF+Q+  + EVFMKLP GC   SG+IVRL K++YGLKQA + + K LV  L+ +IG  QS SDPCV R      V  I+ +HV D++ +G
Sbjct:  502 TFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLL-RIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAG 622
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BLAST of mRNA_H-paniculata_contig17973.4329.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.490e-25
Identity = 57/122 (46.72%), Postives = 82/122 (67.21%), Query Frame = 1 
Query:    1 TFSPTVAASSVKMVIVVAVENDWRLWQLDVK*AFIQAIFNFEVFMKLPEGCGDKSGRIVRLKKAMYGLKQAGQMWSKHLVEALMDKIGMAQSKSDPCVFRLEKRGVVDMIMRVHVHDVIVSG 366
            TFSPT  A+S+++V+ +A + +  L  LD++ AF+Q+  + EVFMKLP GC   SG+IVRL K++YGLKQA + + K LV  L+ +IG  QS SDPCV R      V  I+ +HV D++ +G
Sbjct:  566 TFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLL-RIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAG 686
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BLAST of mRNA_H-paniculata_contig17973.4329.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.490e-25
Identity = 57/122 (46.72%), Postives = 82/122 (67.21%), Query Frame = 1 
Query:    1 TFSPTVAASSVKMVIVVAVENDWRLWQLDVK*AFIQAIFNFEVFMKLPEGCGDKSGRIVRLKKAMYGLKQAGQMWSKHLVEALMDKIGMAQSKSDPCVFRLEKRGVVDMIMRVHVHDVIVSG 366
            TFSPT  A+S+++V+ +A + +  L  LD++ AF+Q+  + EVFMKLP GC   SG+IVRL K++YGLKQA + + K LV  L+ +IG  QS SDPCV R      V  I+ +HV D++ +G
Sbjct:  710 TFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLL-RIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAG 830
[Close]
BLAST of mRNA_H-paniculata_contig17973.4329.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 2.550e-25
Identity = 55/122 (45.08%), Postives = 81/122 (66.39%), Query Frame = 1 
Query:    1 TFSPTVAASSVKMVIVVAVENDWRLWQLDVK*AFIQAIFNFEVFMKLPEGCGDKSGRIVRLKKAMYGLKQAGQMWSKHLVEALMDKIGMAQSKSDPCVFRLEKRGVVDMIMRVHVHDVIVSG 366
            TFSPT  A+S ++V+ +A + +  L   D++ AF+Q+  ++EVFMKLP GCG  SG++VRL K++YGLKQA + + K LV  L  +IG  QS SDPCV R      V  ++ +HV D++ +G
Sbjct:   66 TFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELK-RIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAG 186
[Close]
BLAST of mRNA_H-paniculata_contig17973.4329.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 3.760e-25
Identity = 57/122 (46.72%), Postives = 81/122 (66.39%), Query Frame = 1 
Query:    1 TFSPTVAASSVKMVIVVAVENDWRLWQLDVK*AFIQAIFNFEVFMKLPEGCGDKSGRIVRLKKAMYGLKQAGQMWSKHLVEALMDKIGMAQSKSDPCVFRLEKRGVVDMIMRVHVHDVIVSG 366
            TFSPT  A+S+++V+ +A + +  L  LD++ AF+Q+  + EVFMKLP GC   SG+IVRL K+ YGLKQA + + K LV  L+ +IG  QS SDPCV R      V  I+ +HV D++ +G
Sbjct:  230 TFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSWYGLKQASRTFYKRLVSDLL-RIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAG 350
[Close]
BLAST of mRNA_H-paniculata_contig17973.4329.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 7.250e-25
Identity = 55/122 (45.08%), Postives = 81/122 (66.39%), Query Frame = 1 
Query:    1 TFSPTVAASSVKMVIVVAVENDWRLWQLDVK*AFIQAIFNFEVFMKLPEGCGDKSGRIVRLKKAMYGLKQAGQMWSKHLVEALMDKIGMAQSKSDPCVFRLEKRGVVDMIMRVHVHDVIVSG 366
            TFSPT  A+S+++++ +A + D  L   D++ AF+Q+  + EVFMKLP GCG  SG++VRL K++YGLKQA + + K LV  L  +IG  QS SDPCV R      V  ++ +HV D++ +G
Sbjct:  864 TFSPTANAASIRLLVALACKYDLELLHWDIEQAFVQSKLDHEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSDLK-RIGFEQSLSDPCVLRFMMGDEVLGMVAIHVDDILYAG 984
[Close]
BLAST of mRNA_H-paniculata_contig17973.4329.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 9.550e-25
Identity = 55/122 (45.08%), Postives = 81/122 (66.39%), Query Frame = 1 
Query:    1 TFSPTVAASSVKMVIVVAVENDWRLWQLDVK*AFIQAIFNFEVFMKLPEGCGDKSGRIVRLKKAMYGLKQAGQMWSKHLVEALMDKIGMAQSKSDPCVFRLEKRGVVDMIMRVHVHDVIVSG 366
            TFSPT  A+S ++V+ +A + +  L   D++ AF+Q+  ++EVFMKLP GCG  SG++VRL K++YGLKQA + + K LV  L  +IG  QS SDPCV R      V  ++ +HV D++ +G
Sbjct:  631 TFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELK-RIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILCAG 751
[Close]
BLAST of mRNA_H-paniculata_contig17973.4329.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 9.600e-25
Identity = 55/122 (45.08%), Postives = 81/122 (66.39%), Query Frame = 1 
Query:    1 TFSPTVAASSVKMVIVVAVENDWRLWQLDVK*AFIQAIFNFEVFMKLPEGCGDKSGRIVRLKKAMYGLKQAGQMWSKHLVEALMDKIGMAQSKSDPCVFRLEKRGVVDMIMRVHVHDVIVSG 366
            TFSPT  A+S ++V+ +A + +  L   D++ AF+Q+  ++EVFMKLP GCG  SG++VRL K++YGLKQA + + K LV  L  +IG  QS SDPCV R      V  ++ +HV D++ +G
Sbjct:  532 TFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELK-RIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAG 652
[Close]
BLAST of mRNA_H-paniculata_contig17973.4329.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 9.770e-25
Identity = 55/122 (45.08%), Postives = 81/122 (66.39%), Query Frame = 1 
Query:    1 TFSPTVAASSVKMVIVVAVENDWRLWQLDVK*AFIQAIFNFEVFMKLPEGCGDKSGRIVRLKKAMYGLKQAGQMWSKHLVEALMDKIGMAQSKSDPCVFRLEKRGVVDMIMRVHVHDVIVSG 366
            TFSPT  A+S ++V+ +A + +  L   D++ AF+Q+  ++EVFMKLP GCG  SG++VRL K++YGLKQA + + K LV  L  +IG  QS SDPCV R      V  ++ +HV D++ +G
Sbjct:  799 TFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELK-RIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAG 919
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17973.4329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSV9_9PHAE3.250e-2643.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LDZ0_9PHAE1.490e-2546.72CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J594_9PHAE1.490e-2546.72Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE1.490e-2546.72CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JQD0_9PHAE2.550e-2545.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JP36_9PHAE3.760e-2546.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB16_9PHAE7.250e-2545.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L3Y0_9PHAE9.550e-2545.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKK1_9PHAE9.600e-2545.08Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE9.770e-2545.08Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17973contigH-paniculata_contig17973:4093..4461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score62.4
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog126957.SMAR012572-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
Exons1
Model size369
Cds size237
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929402.727738-UTR-H-paniculata_contig17973:4092..42241622929402.727738-UTR-H-paniculata_contig17973:4092..4224Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17973 4093..4224 +
1691480845.6485717-UTR-H-paniculata_contig17973:4092..42241691480845.6485717-UTR-H-paniculata_contig17973:4092..4224Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17973 4093..4224 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929402.7456112-CDS-H-paniculata_contig17973:4224..44611622929402.7456112-CDS-H-paniculata_contig17973:4224..4461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17973 4225..4461 +
1691480845.6607187-CDS-H-paniculata_contig17973:4224..44611691480845.6607187-CDS-H-paniculata_contig17973:4224..4461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17973 4225..4461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17973.4329.1prot_H-paniculata_contig17973.4329.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17973 4225..4461 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17973.4329.1

>prot_H-paniculata_contig17973.4329.1 ID=prot_H-paniculata_contig17973.4329.1|Name=mRNA_H-paniculata_contig17973.4329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
MKLPEGCGDKSGRIVRLKKAMYGLKQAGQMWSKHLVEALMDKIGMAQSKS
DPCVFRLEKRGVVDMIMRVHVHDVIVSG*
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mRNA from alignment at H-paniculata_contig17973:4093..4461+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17973.4329.1 ID=mRNA_H-paniculata_contig17973.4329.1|Name=mRNA_H-paniculata_contig17973.4329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=369bp|location=Sequence derived from alignment at H-paniculata_contig17973:4093..4461+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACATTTTCTCCTACAGTAGCCGCTTCCAGTGTCAAGATGGTGATTGTTGT
TGCTGTTGAAAACGACTGGAGACTGTGGCAATTAGATGTGAAATAGGCCT
TTATTCAGGCGATTTTTAATTTCGAGGTGTTCATGAAGCTTCCAGAGGGT
TGCGGGGACAAAAGCGGTAGAATAGTAAGGCTGAAAAAGGCCATGTATGG
GCTCAAGCAAGCCGGACAGATGTGGTCAAAGCACCTCGTAGAAGCACTCA
TGGATAAAATCGGCATGGCGCAATCCAAGTCCGACCCTTGCGTGTTCAGG
TTAGAGAAACGTGGAGTGGTAGATATGATTATGCGTGTTCATGTACATGA
TGTGATTGTTTCTGGTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig17973:4093..4461+

>mRNA_H-paniculata_contig17973.4329.1 ID=mRNA_H-paniculata_contig17973.4329.1|Name=mRNA_H-paniculata_contig17973.4329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig17973:4093..4461+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGCTTCCAGAGGGTTGCGGGGACAAAAGCGGTAGAATAGTAAGGCT
GAAAAAGGCCATGTATGGGCTCAAGCAAGCCGGACAGATGTGGTCAAAGC
ACCTCGTAGAAGCACTCATGGATAAAATCGGCATGGCGCAATCCAAGTCC
GACCCTTGCGTGTTCAGGTTAGAGAAACGTGGAGTGGTAGATATGATTAT
GCGTGTTCATGTACATGATGTGATTGTTTCTGGTTAGATGAAGCTTCCAG
AGGGTTGCGGGGACAAAAGCGGTAGAATAGTAAGGCTGAAAAAGGCCATG
TATGGGCTCAAGCAAGCCGGACAGATGTGGTCAAAGCACCTCGTAGAAGC
ACTCATGGATAAAATCGGCATGGCGCAATCCAAGTCCGACCCTTGCGTGT
TCAGGTTAGAGAAACGTGGAGTGGTAGATATGATTATGCGTGTTCATGTA
CATGATGTGATTGTTTCTGGTTAG
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