prot_H-paniculata_contig1797.4326.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1797.4326.1
Unique Nameprot_H-paniculata_contig1797.4326.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length188
Homology
BLAST of mRNA_H-paniculata_contig1797.4326.1 vs. uniprot
Match: D8LE99_ECTSI (ATP-dependent Clp protease adaptor protein ClpS n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE99_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 8.660e-27
Identity = 81/160 (50.62%), Postives = 97/160 (60.62%), Query Frame = 0
Query:    1 MFQSRLLLTIALVAASASNWGSAFVPHVPKTSPTSGQKLVRTARATWTG-RPDAQSASPRSPYAAVRMAAGVTMSTPDTIVAKPTVGFSNEQQTS---EIRPEDKYKVLLFNDNGNTREYVSRSLVQVVGLPENVAYQIMQQANDNGMAQAHQPHQCQGD 156
            MF+   +L +ALVA++++    AFV  VP                 WT  RP A S  P S   A+ MAAGV M  P+   A P++G  ++++ S    IRPEDKYKVLLFNDNGNTREYVSRSLVQVVGL E  A+ IMQQANDNGMAQ    HQ   D
Sbjct:    1 MFRPLQVLILALVASAST----AFV--VPA----------------WTAMRPAAASGRPIS---ALNMAAGVAM--PEIKTAGPSIGVLDKKEVSFETSIRPEDKYKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQANDNGMAQVGIWHQEMAD 133          
BLAST of mRNA_H-paniculata_contig1797.4326.1 vs. uniprot
Match: A0A835ZJP8_9STRA (ATP-dependent Clp protease adaptor protein ClpS-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJP8_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.680e-13
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 0
Query:   98 PEDKYKVLLFNDNGNTREYVSRSLVQVVGLPENVAYQIMQQANDNGMA 145
            P DK+KV+LFNDNGNTREYV+RSLVQV+G+ E+ AY IM  A+ NGMA
Sbjct:   56 PADKFKVMLFNDNGNTREYVARSLVQVIGMTESDAYDIMTMAHKNGMA 103          
BLAST of mRNA_H-paniculata_contig1797.4326.1 vs. uniprot
Match: A0A7S2VY96_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VY96_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.230e-6
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 0
Query:  100 DKYKVLLFNDNGNTREYVSRSLVQVVGLPENVAYQIMQQANDNGMA 145
            D ++V ++ND  NTRE+VSR LVQ+VGL E  AYQ M QA+ NG+A
Sbjct:  107 DAWEVRIYNDVKNTREFVSRCLVQIVGLSETFAYQTMMQAHKNGLA 152          
BLAST of mRNA_H-paniculata_contig1797.4326.1 vs. uniprot
Match: A0A7S2R9I8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9I8_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.300e-6
Identity = 36/80 (45.00%), Postives = 47/80 (58.75%), Query Frame = 0
Query:   70 GVTMSTPDTIVA---KPTVGFSNEQQTSEIRPED--KYKVLLFNDNGNTREYVSRSLVQVVGLPENVAYQIMQQANDNGM 144
            G T+ TP  + A    P+  F     T + RP    +Y+VLLFND  NT+EYV+R L+ V GL EN A+  M QA+ NGM
Sbjct:   56 GRTLCTPPPLQAFSSAPSKQFVPPDVTPKSRPGGGARYRVLLFNDPMNTKEYVARQLMTVAGLSENNAFDCMMQAHRNGM 135          
BLAST of mRNA_H-paniculata_contig1797.4326.1 vs. uniprot
Match: A0A7S1BGE2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BGE2_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.720e-5
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 0
Query:   71 VTMSTPD--TIVAKPTVGFSNEQQTSEIRPEDK-YKVLLFNDNGNTREYVSRSLVQVVGLPENVAYQIMQQANDNGM 144
            VT+S P   T++ KP +  S E+   +     K +++ ++ND+ NTRE+V+R LVQV GL E  AYQ+M QA+  G+
Sbjct:   57 VTISAPGGATVLEKPDILKSPEKSGQDEMANSKGWELRIYNDHMNTREHVARCLVQVTGLNEGAAYQVMMQAHKFGV 133          
BLAST of mRNA_H-paniculata_contig1797.4326.1 vs. uniprot
Match: A0A6U6GRI4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6GRI4_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 4.190e-5
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 0
Query:  100 DKYKVLLFNDNGNTREYVSRSLVQVVGLPENVAYQIMQQANDNGMA 145
            + ++V ++ND  NTRE+V+R LVQ+VGL E  AYQ M  A+ NG+A
Sbjct:  107 EAWEVRIYNDGMNTREFVARCLVQIVGLTEMTAYQTMMDAHQNGIA 152          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1797.4326.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LE99_ECTSI8.660e-2750.63ATP-dependent Clp protease adaptor protein ClpS n=... [more]
A0A835ZJP8_9STRA2.680e-1370.83ATP-dependent Clp protease adaptor protein ClpS-do... [more]
A0A7S2VY96_9STRA1.230e-658.70Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2R9I8_9STRA1.300e-645.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1BGE2_9STRA1.720e-541.56Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A6U6GRI4_9STRA4.190e-552.17Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3D3.30.1390.10coord: 81..167
e-value: 7.4E-10
score: 40.3
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeSUPERFAMILY54736ClpS-likecoord: 95..147
IPR003769Adaptor protein ClpS, corePFAMPF02617ClpScoord: 98..146
e-value: 1.1E-9
score: 38.0
NoneNo IPR availablePANTHERPTHR33473:SF1ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTICcoord: 70..161
NoneNo IPR availablePANTHERPTHR33473FAMILY NOT NAMEDcoord: 70..161
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..187
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..23
score: 0.693

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1797contigH-paniculata_contig1797:6757..11783 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1797.4326.1mRNA_H-paniculata_contig1797.4326.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1797 6631..12933 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1797.4326.1 ID=prot_H-paniculata_contig1797.4326.1|Name=mRNA_H-paniculata_contig1797.4326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=188bp
MFQSRLLLTIALVAASASNWGSAFVPHVPKTSPTSGQKLVRTARATWTGR
PDAQSASPRSPYAAVRMAAGVTMSTPDTIVAKPTVGFSNEQQTSEIRPED
KYKVLLFNDNGNTREYVSRSLVQVVGLPENVAYQIMQQANDNGMAQAHQP
HQCQGDKVTDQSRRCIAARRPSRSPTVEGPPAAPAQS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014719Ribosomal_L7/12_C/ClpS-like
IPR003769ClpS_core