mRNA_H-paniculata_contig17969.4324.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17969.4324.1 vs. uniprot
Match: D8LHV3_ECTSI (Endonuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHV3_ECTSI) HSP 1 Score: 156 bits (395), Expect = 1.750e-44 Identity = 72/95 (75.79%), Postives = 82/95 (86.32%), Query Frame = 1
Query: 1 IILPSREYTSCWDSRTRNVRWVLERINEATVMGAGDRKRASFRADSRLEPLFRTELSDYRGSGLDRGHLAPAGDHKTTEQNLKETFLLTNMAPQV 285
+ILPS EYTSCWDSRTRN RWV+ERIN TV G GDRK++ FR DSRL+PLFR+ LSD+ GSG DRGHLAPAGDHKTT+ NL +TFLL+NMAPQV
Sbjct: 32 VILPSEEYTSCWDSRTRNARWVVERINLNTVSGPGDRKKSPFRPDSRLQPLFRSSLSDFYGSGYDRGHLAPAGDHKTTQANLTQTFLLSNMAPQV 126
BLAST of mRNA_H-paniculata_contig17969.4324.1 vs. uniprot
Match: A0A6H5JV63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV63_9PHAE) HSP 1 Score: 153 bits (387), Expect = 8.990e-43 Identity = 70/95 (73.68%), Postives = 82/95 (86.32%), Query Frame = 1
Query: 1 IILPSREYTSCWDSRTRNVRWVLERINEATVMGAGDRKRASFRADSRLEPLFRTELSDYRGSGLDRGHLAPAGDHKTTEQNLKETFLLTNMAPQV 285
+ILPS EYTSCWDSRTRN RWV+ERIN TV G GDRK++ FR DSRL+PLFR+ LSD+ GSG DRGHLAPAG+HKTT+ NL +TFLL+NMAPQ+
Sbjct: 87 VILPSEEYTSCWDSRTRNARWVVERINLNTVSGPGDRKKSPFRPDSRLQPLFRSSLSDFYGSGYDRGHLAPAGNHKTTQANLTQTFLLSNMAPQM 181
BLAST of mRNA_H-paniculata_contig17969.4324.1 vs. uniprot
Match: A0A7S2Z7Z8_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S2Z7Z8_9CHLO) HSP 1 Score: 99.4 bits (246), Expect = 1.440e-23 Identity = 44/95 (46.32%), Postives = 66/95 (69.47%), Query Frame = 1
Query: 1 IILPSREYTSCWDSRTRNVRWVLERINEATVMGAGDRKRASFRADSRLEPLFRTELSDYRGSGLDRGHLAPAGDHKTTEQNLKETFLLTNMAPQV 285
++ P + S +D+RTRN WV+ERI+E T G G+RK + F+ D+ + R +L D+RGSG DRGH+APA HK +++ + ETF L+N++PQV
Sbjct: 105 VLRPFTNFVSFFDTRTRNPHWVIERISEETSNGDGNRKFSFFKEDAAIPSKLRNKLEDFRGSGYDRGHMAPASAHKLSQKTMDETFTLSNISPQV 199
BLAST of mRNA_H-paniculata_contig17969.4324.1 vs. uniprot
Match: I0YZI9_COCSC (Endonuclease (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZI9_COCSC) HSP 1 Score: 99.0 bits (245), Expect = 1.470e-23 Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = 1
Query: 16 REYTSCWDSRTRNVRWVLERINEATVMGAGDRKRASFRADSRLEPLFRTELSDYRGSGLDRGHLAPAGDHKTTEQNLKETFLLTNMAPQVSLSY 297
+ + +DSRTRN RWVLE I A G G+RK F D L+ FR+ LSD++ SG DRGH+APA +HK T + ETF+L+N +PQV +
Sbjct: 15 KNFVLSFDSRTRNPRWVLEHITRAQTQGEGNRKNVEFYEDKSLDQRFRSRLSDFKESGFDRGHMAPAANHKETADTMLETFVLSNTSPQVGRGF 108
BLAST of mRNA_H-paniculata_contig17969.4324.1 vs. uniprot
Match: A0A5B8MD10_9CHLO (DNA/RNA non-specific endonuclease n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MD10_9CHLO) HSP 1 Score: 102 bits (253), Expect = 2.260e-23 Identity = 46/95 (48.42%), Postives = 64/95 (67.37%), Query Frame = 1
Query: 1 IILPSREYTSCWDSRTRNVRWVLERINEATVMGAGDRKRASFRADSRLEPLFRTELSDYRGSGLDRGHLAPAGDHKTTEQNLKETFLLTNMAPQV 285
I+ P + S +D+RTRN WV+ERI+E T G GDRK + F+ D ++ R +L D+RGSG DRGH+APA HK + + ETF L+N++PQV
Sbjct: 107 ILRPFTNFVSYFDTRTRNPHWVIERISEDTSRGDGDRKFSKFKEDDKIPDKLRNKLDDFRGSGYDRGHMAPASAHKLNQATMDETFTLSNISPQV 201
BLAST of mRNA_H-paniculata_contig17969.4324.1 vs. uniprot
Match: A0A2P6TKJ2_CHLSO (Mitochondrial nuclease n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TKJ2_CHLSO) HSP 1 Score: 100 bits (250), Expect = 3.910e-23 Identity = 47/94 (50.00%), Postives = 64/94 (68.09%), Query Frame = 1
Query: 19 EYTSCWDSRTRNVRWVLERINEATVMGA-GDRKRASFRADSRLEPLFRTELSDYRGSGLDRGHLAPAGDHKTTEQNLKETFLLTNMAPQVSLSY 297
++ + +D+R RN RWVLE IN + G R+ + F DS +E FR++L DYRGSG DRGH+APA +HKTT+ + ETF LTNM+PQV +
Sbjct: 66 DFAASFDTRLRNPRWVLEHINRGKLSSREGSRQNSEFVEDSGIERRFRSKLDDYRGSGYDRGHMAPASNHKTTQSTMDETFSLTNMSPQVGAGF 159
BLAST of mRNA_H-paniculata_contig17969.4324.1 vs. uniprot
Match: A0A059LI60_9CHLO (DNA/RNA non-specific endonuclease n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LI60_9CHLO) HSP 1 Score: 99.8 bits (247), Expect = 4.580e-23 Identity = 46/88 (52.27%), Postives = 58/88 (65.91%), Query Frame = 1
Query: 22 YTSCWDSRTRNVRWVLERINEATVMGAGDRKRASFRADSRLEPLFRTELSDYRGSGLDRGHLAPAGDHKTTEQNLKETFLLTNMAPQV 285
Y S D R RN RWV+E + A++ GAG R + F D +EP FR LSDYRGSG DRGH+APA +HK ++Q + TF L+N PQV
Sbjct: 13 YASLVDVRLRNPRWVIEHLTAASLQGAGSRGNSQFVEDEGIEPRFRARLSDYRGSGYDRGHMAPASNHKASQQAMDATFTLSNTCPQV 100
BLAST of mRNA_H-paniculata_contig17969.4324.1 vs. uniprot
Match: A0A8J9WNK3_9CHLO (Probable endonuclease G, mitochondrial n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WNK3_9CHLO) HSP 1 Score: 99.8 bits (247), Expect = 1.680e-22 Identity = 46/94 (48.94%), Postives = 61/94 (64.89%), Query Frame = 1
Query: 16 REYTSCWDSRTRNVRWVLERINEATVMGAGDRKRASFRADSRLEPLFRTELSDYRGSGLDRGHLAPAGDHKTTEQNLKETFLLTNMAPQVSLSY 297
+ + +DSRTRN RWVLE I A G G+RK F D L+ FR+ LSD+R SG DRGH+APA +HK T + ETF+L+N++PQV +
Sbjct: 56 QNFVLSFDSRTRNPRWVLEHITRAQTRGDGNRKNVEFYEDKELDQRFRSRLSDFRESGYDRGHMAPAANHKETADTMLETFVLSNISPQVGRGF 149
BLAST of mRNA_H-paniculata_contig17969.4324.1 vs. uniprot
Match: A0A835YH22_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YH22_9CHLO) HSP 1 Score: 98.2 bits (243), Expect = 6.420e-22 Identity = 44/99 (44.44%), Postives = 63/99 (63.64%), Query Frame = 1
Query: 1 IILPSREYTSCWDSRTRNVRWVLERINEATVMGAGDRKRASFRADSRLEPLFRTELSDYRGSGLDRGHLAPAGDHKTTEQNLKETFLLTNMAPQVSLSY 297
I+ P Y + +D RTRN +WVLE I A+ G R R+ F D ++P F +LSD+RGSG DRGH+APA +HK +++ + ETF L N++PQ +
Sbjct: 53 IVRPYEGYVAAYDYRTRNPKWVLEHITPASWSGEASRDRSEFFPDPGVDPRFSAQLSDFRGSGYDRGHMAPAANHKVSQKAMDETFSLVNISPQAGKGF 151
BLAST of mRNA_H-paniculata_contig17969.4324.1 vs. uniprot
Match: A0A7K8XF69_9PICI (Endonuclease (Fragment) n=4 Tax=Piciformes TaxID=9219 RepID=A0A7K8XF69_9PICI) HSP 1 Score: 96.3 bits (238), Expect = 6.850e-22 Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 1
Query: 7 LPSRE-YTSCWDSRTRNVRWVLERINEATVMGAGDRKRASFRADSRLEPLFRTELSDYRGSGLDRGHLAPAGDHKTTEQNLKETFLLTNMAPQ 282
L SRE Y C+D R+R+ WV+E++N+ T+ GA DR FR D + R +DYRGSG DRGHLA A +HK ++Q +++TF L+N+APQ
Sbjct: 75 LRSRESYVLCYDPRSRSALWVIEQLNQHTLSGASDRAACDFREDDSVHEYHRATNADYRGSGFDRGHLAAAANHKWSQQAMRDTFYLSNIAPQ 167 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17969.4324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17969.4324.1 >prot_H-paniculata_contig17969.4324.1 ID=prot_H-paniculata_contig17969.4324.1|Name=mRNA_H-paniculata_contig17969.4324.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp IILPSREYTSCWDSRTRNVRWVLERINEATVMGAGDRKRASFRADSRLEPback to top mRNA from alignment at H-paniculata_contig17969:2397..5099+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17969.4324.1 ID=mRNA_H-paniculata_contig17969.4324.1|Name=mRNA_H-paniculata_contig17969.4324.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2703bp|location=Sequence derived from alignment at H-paniculata_contig17969:2397..5099+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17969:2397..5099+ >mRNA_H-paniculata_contig17969.4324.1 ID=mRNA_H-paniculata_contig17969.4324.1|Name=mRNA_H-paniculata_contig17969.4324.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig17969:2397..5099+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |