mRNA_H-paniculata_contig17958.4323.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17958.4323.1
Unique NamemRNA_H-paniculata_contig17958.4323.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17958.4323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17958contigH-paniculata_contig17958:2187..2684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size500
Cds size345
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929401.8936896-UTR-H-paniculata_contig17958:2186..23391622929401.8936896-UTR-H-paniculata_contig17958:2186..2339Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17958 2187..2339 +
1691480845.235133-UTR-H-paniculata_contig17958:2186..23391691480845.235133-UTR-H-paniculata_contig17958:2186..2339Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17958 2187..2339 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929401.9060652-CDS-H-paniculata_contig17958:2339..26841622929401.9060652-CDS-H-paniculata_contig17958:2339..2684Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17958 2340..2684 +
1691480845.24785-CDS-H-paniculata_contig17958:2339..26841691480845.24785-CDS-H-paniculata_contig17958:2339..2684Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17958 2340..2684 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17958.4323.1prot_H-paniculata_contig17958.4323.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17958 2340..2684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17958.4323.1

>prot_H-paniculata_contig17958.4323.1 ID=prot_H-paniculata_contig17958.4323.1|Name=mRNA_H-paniculata_contig17958.4323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MSTTENSIRPTPKLERLLNVKACTTKHVLGLEVTSTGVPVGHKSWWSVLW
STLRFSRNHFCIEVRGRPYQRRRPPPFGFLLRFCFCLNLCLSIFNVMPCF
REEEMESIPGSGRCE
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mRNA from alignment at H-paniculata_contig17958:2187..2684+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17958.4323.1 ID=mRNA_H-paniculata_contig17958.4323.1|Name=mRNA_H-paniculata_contig17958.4323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=498bp|location=Sequence derived from alignment at H-paniculata_contig17958:2187..2684+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAGACGGAGAATGTTACAAATTCAGAACACTCGTTTTTCGCTTGAAA
CTCACGGACTGACACTATATACCACCCTCCTGTTGTACAATACAGTATTT
AGTACTGTAAGCTCTGCGTACCAACGAAGTCGAAGACCAACATGTGTATG
TGAATGTCAACTACAGAAAATTCTATCAGACCGACTCCAAAACTTGAGCG
CCTGCTAAACGTCAAAGCCTGCACGACAAAACACGTTTTAGGGCTAGAAG
TGACATCGACCGGGGTACCTGTTGGCCACAAGAGTTGGTGGTCAGTACTT
TGGTCCACCCTTAGGTTCAGCCGTAATCATTTTTGTATCGAGGTTAGAGG
TCGGCCTTACCAACGGCGTCGCCCTCCACCCTTTGGCTTCTTGCTTCGTT
TTTGTTTTTGCTTGAATTTATGCCTTTCGATATTTAATGTCATGCCTTGC
TTTCGTGAGGAAGAAATGGAGAGCATCCCTGGCTCCGGTCGGTGCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig17958:2187..2684+

>mRNA_H-paniculata_contig17958.4323.1 ID=mRNA_H-paniculata_contig17958.4323.1|Name=mRNA_H-paniculata_contig17958.4323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig17958:2187..2684+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAACTACAGAAAATTCTATCAGACCGACTCCAAAACTTGAGCGCCT
GCTAAACGTCAAAGCCTGCACGACAAAACACGTTTTAGGGCTAGAAGTGA
CATCGACCGGGGTACCTGTTGGCCACAAGAGTTGGTGGTCAGTACTTTGG
TCCACCCTTAGGTTCAGCCGTAATCATTTTTGTATCGAGGTTAGAGGTCG
GCCTTACCAACGGCGTCGCCCTCCACCCTTTGGCTTCTTGCTTCGTTTTT
GTTTTTGCTTGAATTTATGCCTTTCGATATTTAATGTCATGCCTTGCTTT
CGTGAGGAAGAAATGGAGAGCATCCCTGGCTCCGGTCGGTGCGAGATGTC
AACTACAGAAAATTCTATCAGACCGACTCCAAAACTTGAGCGCCTGCTAA
ACGTCAAAGCCTGCACGACAAAACACGTTTTAGGGCTAGAAGTGACATCG
ACCGGGGTACCTGTTGGCCACAAGAGTTGGTGGTCAGTACTTTGGTCCAC
CCTTAGGTTCAGCCGTAATCATTTTTGTATCGAGGTTAGAGGTCGGCCTT
ACCAACGGCGTCGCCCTCCACCCTTTGGCTTCTTGCTTCGTTTTTGTTTT
TGCTTGAATTTATGCCTTTCGATATTTAATGTCATGCCTTGCTTTCGTGA
GGAAGAAATGGAGAGCATCCCTGGCTCCGGTCGGTGCGAG
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