mRNA_H-paniculata_contig17958.4322.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17958.4322.1
Unique NamemRNA_H-paniculata_contig17958.4322.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17958.4322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17958contigH-paniculata_contig17958:1488..1997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size510
Cds size393
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929401.8410053-UTR-H-paniculata_contig17958:1487..16041622929401.8410053-UTR-H-paniculata_contig17958:1487..1604Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17958 1488..1604 +
1691480845.211589-UTR-H-paniculata_contig17958:1487..16041691480845.211589-UTR-H-paniculata_contig17958:1487..1604Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17958 1488..1604 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929401.858125-CDS-H-paniculata_contig17958:1604..19971622929401.858125-CDS-H-paniculata_contig17958:1604..1997Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17958 1605..1997 +
1691480845.2228966-CDS-H-paniculata_contig17958:1604..19971691480845.2228966-CDS-H-paniculata_contig17958:1604..1997Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17958 1605..1997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17958.4322.1prot_H-paniculata_contig17958.4322.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17958 1605..1997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17958.4322.1

>prot_H-paniculata_contig17958.4322.1 ID=prot_H-paniculata_contig17958.4322.1|Name=mRNA_H-paniculata_contig17958.4322.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp
MVHFTTSPVLLDEMAFRTPYRQLARHALSKSLPWSQCIQSSSTPCAVFVV
VQRALAVVRTGSGVIALRPSAVEALVGNTQQGKQQQQQLPQGGRRAYHSI
RPVYSLTQRTSAAAVLAVGQARLKHSSGKKG
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mRNA from alignment at H-paniculata_contig17958:1488..1997+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17958.4322.1 ID=mRNA_H-paniculata_contig17958.4322.1|Name=mRNA_H-paniculata_contig17958.4322.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=510bp|location=Sequence derived from alignment at H-paniculata_contig17958:1488..1997+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCATTTGCTATATCCAGTCTCGCGTCTCTTTCCATTTTGACCGTTCTA
CTGCGTGTAGTATATACATTCAGAAATATCTATCTGTGTAACCCCTTTCC
ATACCCATGAGTTTCTGATGGTACATTTCACAACATCTCCAGTACTTCTC
GACGAGATGGCATTCAGAACACCGTACAGGCAGCTCGCAAGACATGCACT
GTCAAAATCATTGCCATGGTCACAATGCATCCAATCTTCTAGCACTCCTT
GTGCAGTATTTGTGGTAGTGCAGCGAGCATTGGCCGTCGTACGAACTGGT
AGCGGGGTTATTGCTCTGAGGCCGTCGGCTGTTGAGGCACTTGTGGGCAA
CACACAACAGGGGAAACAGCAACAACAGCAGCTCCCACAGGGGGGCAGGC
GAGCGTATCATTCGATCCGCCCGGTTTATTCCTTGACCCAGCGGACTAGT
GCTGCCGCGGTGTTAGCTGTCGGACAAGCCAGACTCAAGCATAGCAGTGG
AAAGAAAGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig17958:1488..1997+

>mRNA_H-paniculata_contig17958.4322.1 ID=mRNA_H-paniculata_contig17958.4322.1|Name=mRNA_H-paniculata_contig17958.4322.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig17958:1488..1997+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTACATTTCACAACATCTCCAGTACTTCTCGACGAGATGGCATTCAG
AACACCGTACAGGCAGCTCGCAAGACATGCACTGTCAAAATCATTGCCAT
GGTCACAATGCATCCAATCTTCTAGCACTCCTTGTGCAGTATTTGTGGTA
GTGCAGCGAGCATTGGCCGTCGTACGAACTGGTAGCGGGGTTATTGCTCT
GAGGCCGTCGGCTGTTGAGGCACTTGTGGGCAACACACAACAGGGGAAAC
AGCAACAACAGCAGCTCCCACAGGGGGGCAGGCGAGCGTATCATTCGATC
CGCCCGGTTTATTCCTTGACCCAGCGGACTAGTGCTGCCGCGGTGTTAGC
TGTCGGACAAGCCAGACTCAAGCATAGCAGTGGAAAGAAAGGTATGGTAC
ATTTCACAACATCTCCAGTACTTCTCGACGAGATGGCATTCAGAACACCG
TACAGGCAGCTCGCAAGACATGCACTGTCAAAATCATTGCCATGGTCACA
ATGCATCCAATCTTCTAGCACTCCTTGTGCAGTATTTGTGGTAGTGCAGC
GAGCATTGGCCGTCGTACGAACTGGTAGCGGGGTTATTGCTCTGAGGCCG
TCGGCTGTTGAGGCACTTGTGGGCAACACACAACAGGGGAAACAGCAACA
ACAGCAGCTCCCACAGGGGGGCAGGCGAGCGTATCATTCGATCCGCCCGG
TTTATTCCTTGACCCAGCGGACTAGTGCTGCCGCGGTGTTAGCTGTCGGA
CAAGCCAGACTCAAGCATAGCAGTGGAAAGAAAGGT
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