mRNA_H-paniculata_contig17957.4321.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17957.4321.1
Unique NamemRNA_H-paniculata_contig17957.4321.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17957.4321.1 vs. uniprot
Match: D7G152_ECTSI (Mcl1_mid domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G152_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 1.570e-26
Identity = 64/108 (59.26%), Postives = 77/108 (71.30%), Query Frame = 1 
Query:    1 MDAIATEKDGTRIFIAGGEGMMKEFDLKT---QNFVREIELDVDDTSDEGFAGTALAISPDGKELALGLVNGHVNLYDLPSLEFKSILVRFTAPVLDLDYGM-GGEVM 312
            MDA AT  DG RIF  G EGM+K FD K+   Q+ V E+ LDV+D  DEG A TA+A+SP G ELA+GL NG V L+ LP L+FKS+L RFTAPVL L YGM  G+V+
Sbjct:   20 MDA-ATTSDGLRIFAGGAEGMVKVFDPKSSSIQDAVAELNLDVNDEGDEGLAVTAVAVSPAGDELAVGLRNGDVKLHGLPKLDFKSMLTRFTAPVLGLAYGMKDGDVI 126
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BLAST of mRNA_H-paniculata_contig17957.4321.1 vs. uniprot
Match: A0A6H5KUW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUW1_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 2.830e-23
Identity = 63/118 (53.39%), Postives = 76/118 (64.41%), Query Frame = 1 
Query:    1 MDAIATEKDGTRIFIAGGEGMMKE----------FDLKT---QNFVREIELDVDDTSDEGFAGTALAISPDGKELALGLVNGHVNLYDLPSLEFKSILVRFTAPVLDLDYGM-GGEVM 312
            MDA AT  DG RIF  G EG +K           FD K+   Q+ V E+ LDV+D  DEG A TA+A+SP G ELA+GL NG V L+ LP L+FKS+L RFTAPVL L YGM  G+V+
Sbjct:   20 MDA-ATTSDGLRIFAGGAEGTVKVGAKPGDGEAVFDPKSSSIQDAVAELNLDVNDDGDEGLAVTAVAVSPAGDELAVGLRNGDVKLHGLPKLDFKSMLTRFTAPVLGLAYGMKDGDVI 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17957.4321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G152_ECTSI1.570e-2659.26Mcl1_mid domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KUW1_9PHAE2.830e-2353.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17957contigH-paniculata_contig17957:1016..2870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue7.2e-23
Seed eggNOG ortholog2880.D7G152
Preferred nameWDHD1
KEGG koko:K11274
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000727,GO:0000775,GO:0000785,GO:0000790,GO:0000819,GO:0000981,GO:0001302,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003700,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006271,GO:0006273,GO:0006281,GO:0006302,GO:0006310,GO:0006325,GO:0006342,GO:0006355,GO:0006357,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007275,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009790,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016458,GO:0019219,GO:0019222,GO:0019899,GO:0022402,GO:0022616,GO:0030702,GO:0031298,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033260,GO:0033301,GO:0033554,GO:0033567,GO:0034085,GO:0034641,GO:0034645,GO:0035185,GO:0040029,GO:0042023,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043954,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045448,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051716,GO:0060255,GO:0061641,GO:0065007,GO:0070013,GO:0070063,GO:0070827,GO:0070828,GO:0070829,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0098687,GO:0098813,GO:0140014,GO:0140110,GO:1901360,GO:1901363,GO:1901576,GO:1902679,GO:1902969,GO:1903047,GO:1903461,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.heterochromatin maintenance
EggNOG OGsKOG1274@1,KOG1274@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size315
Cds size315
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929401.775239-CDS-H-paniculata_contig17957:1015..12611622929401.775239-CDS-H-paniculata_contig17957:1015..1261Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17957 1016..1261 -
1691480845.1906283-CDS-H-paniculata_contig17957:1015..12611691480845.1906283-CDS-H-paniculata_contig17957:1015..1261Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17957 1016..1261 -
1622929401.7914093-CDS-H-paniculata_contig17957:2801..28701622929401.7914093-CDS-H-paniculata_contig17957:2801..2870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17957 2802..2870 -
1691480845.2025218-CDS-H-paniculata_contig17957:2801..28701691480845.2025218-CDS-H-paniculata_contig17957:2801..2870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17957 2802..2870 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17957.4321.1prot_H-paniculata_contig17957.4321.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17957 1016..2870 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17957.4321.1

>prot_H-paniculata_contig17957.4321.1 ID=prot_H-paniculata_contig17957.4321.1|Name=mRNA_H-paniculata_contig17957.4321.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MDAIATEKDGTRIFIAGGEGMMKEFDLKTQNFVREIELDVDDTSDEGFAG
TALAISPDGKELALGLVNGHVNLYDLPSLEFKSILVRFTAPVLDLDYGMG
GEVM*
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mRNA from alignment at H-paniculata_contig17957:1016..2870-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17957.4321.1 ID=mRNA_H-paniculata_contig17957.4321.1|Name=mRNA_H-paniculata_contig17957.4321.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1855bp|location=Sequence derived from alignment at H-paniculata_contig17957:1016..2870- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGCCATAGCCACAGAGAAGGATGGAACTCGGATTTTCATTGCTGG
CGGCGAGGGGATGATGAAGGTGGGTGGTGTTGCCATAGATAGGTAAATGT
TTCTGCGAGGTGAGGGTGCAGACTGTTGTGGCGGAGTGAGTTTTCACTCT
CCGTTTTCGAACGCAGGAAGCTTGCGAGGACTGACCGCGCTGGTGCGGGA
AGCATGCACACTGGCAAACGCATCCACATTGATTTCTGCAGGCCGATTCT
TGCTAGAGAATGATACCTCCGTCTTGGTGTGCTTTGCCATCCTTGTTTAC
ACAACTTTCGTTTGACTTTTGCTTTGGAAACTGTATTTACATTTTCAGCT
CTACGCATTTTCTGTATAGCATGTACCGACGGCTGAACGTGATGTACGTC
CCAGAGTACACTCTTCATTAAATACTCTCCGGTCTACGGTTCTGTCTGTG
CCGTGTAGTGCCGTATTGTCTGTGCAAGTACTATTTAACAGCTGGTTGAA
CCAATTCACATATCGCACAGAGAACAGTGTTACGATACAGACAGTCAGCA
GTGTGCCGTTCGCGGTTGGTCGAGGCGGAAAAACATGATGAAAATGGTTC
TGGGTACACACAATGCCAAGGGATTTAGTTGTGTGGCACCATACAACGTT
CAGCTGTCGACGTGTAGCTATGGCAGCGTAAGGAACAAGCAGCACAAGAA
TTTCCCAGCGTTCTGGACATGTATCTACATCCTGTGAGAGAATATGAGCT
ATATCACACTTACCCCGGCAGTGGTACGGGGTACTAAAGCGCACAAACCT
TGACATCAGTGTGGGAAAGGGTCCCCGTGTAGTGCACACGCAGCAGGAAT
ATGCACGTCTCTTTTCACGACAGCTACCCGTCATCTGCCAACGCAGCTAA
CAATTTCTGGCTTCTGAACACAGAAAAAAACCCATCGTACCAACAGCAAT
AACGCGATATTAATTCTCCAAACCCCACGCCGTCTATGGCACTGCTGCTG
TAAATCGCCTTTCAGTGGTGGGTAAGGGGTGTGCAAAAACTGAAACAAGG
AACAGGGTTTTCGTTTTCCTTTTGGTTCCGCTGTTGTGGCCAGGGGGAGC
GGAAAGAAAATGCGATATGAACACAAGACTAACAGCGACCAACAGAGCAA
GATAAAAGTTGAACCCAAATGGTTCAACCGTAGACTGCAAGAGCTCCTCC
TCCAACATATTGTTCAATAGCTCCATCGGTAGCTCTCAATCAAAAAGTCC
CGGTCGACGGGATTGTACATTTTCGTGGACCTTCTCGGAACAAGAAAATG
ACACTTTTCATCTTCATATGTGCAAACCGATCACCAATCACACAAATTTG
TTGTTTTCTTTTTTTTGCACCTGTTGTCACACTACGTTTGTCTCTGACTT
GTGCATGCAGTATTATTCTTAATATAAAAGTGGCGCCTCGCACATCAAAT
TATATACCCCCCATCGAGACTTTTTAGCGTCTGCTGATCGTCATCAATTA
AATACCTACAGCCTTACATGGTTATTTGGTACATTACCCCGTCCCCCGCG
CGCTACTTTCCCTACCCCCCTTTTCTGTATAACCCTTTGCGATATAATAC
AAAATCCAGGAATTCGACCTGAAAACTCAAAACTTCGTTCGTGAAATTGA
ACTTGATGTGGACGACACCAGTGACGAAGGCTTCGCTGGCACCGCGCTGG
CCATCAGCCCGGACGGCAAGGAGTTGGCGCTGGGTCTTGTCAACGGCCAC
GTTAACCTGTACGACCTGCCGTCACTGGAGTTCAAATCTATCCTAGTGCG
TTTCACGGCGCCGGTTCTCGACCTCGACTACGGCATGGGAGGCGAAGTCA
TGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig17957:1016..2870-

>mRNA_H-paniculata_contig17957.4321.1 ID=mRNA_H-paniculata_contig17957.4321.1|Name=mRNA_H-paniculata_contig17957.4321.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig17957:1016..2870- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGCCATAGCCACAGAGAAGGATGGAACTCGGATTTTCATTGCTGG
CGGCGAGGGGATGATGAAGATGGATGCCATAGCCACAGAGAAGGATGGAA
CTCGGATTTTCATTGCTGGCGGCGAGGGGATGATGAAGGAATTCGACCTG
AAAACTCAAAACTTCGTTCGTGAAATTGAACTTGATGTGGACGACACCAG
TGACGAAGGCTTCGCTGGCACCGCGCTGGCCATCAGCCCGGACGGCAAGG
AGTTGGCGCTGGGTCTTGTCAACGGCCACGTTAACCTGTACGACCTGCCG
TCACTGGAGTTCAAATCTATCCTAGTGCGTTTCACGGCGCCGGTTCTCGA
CCTCGACTACGGCATGGGAGGCGAAGTCATGTGAGAATTCGACCTGAAAA
CTCAAAACTTCGTTCGTGAAATTGAACTTGATGTGGACGACACCAGTGAC
GAAGGCTTCGCTGGCACCGCGCTGGCCATCAGCCCGGACGGCAAGGAGTT
GGCGCTGGGTCTTGTCAACGGCCACGTTAACCTGTACGACCTGCCGTCAC
TGGAGTTCAAATCTATCCTAGTGCGTTTCACGGCGCCGGTTCTCGACCTC
GACTACGGCATGGGAGGCGAAGTCATGTGA
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