mRNA_H-paniculata_contig1795.4319.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig1795.4319.1 vs. uniprot
Match: D8LH69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH69_ECTSI) HSP 1 Score: 297 bits (760), Expect = 3.160e-98 Identity = 199/235 (84.68%), Postives = 206/235 (87.66%), Query Frame = 1
Query: 1 MTTAHRPTWVAAQGAASDSGNWSTGGQASQAVSSWDLPSQTKLKFRQTGQNSERELRKRDARAEVEDSERRAFDSKPIGSSRRYDEGGGGRGRERLQLLLKEQVEVNLDDVKKYDDAXXXXXXXXXXXXXXXXXXXXXXXXLEKELEKIRXXXXXXXXXXXXXXAEVEEKRKREAAMTGNILLTQ-NTSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 702
MTTAHRPTW AQ AASD GNWSTGGQASQAVS+ DLPSQT LKFR+TGQNSE ELRKRD RAEVEDSERRA D KP +RRYDEGG GRGR+RLQLLLKEQ +VNLDDVKKYDD XXXXXXXXXXXXXXXXXXXXXX LEKELEKIR XXXXXXXXXX RK+EAAMTGNILLTQ N+SSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK
Sbjct: 1 MTTAHRPTWAPAQAAASDVGNWSTGGQASQAVSAHDLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEKPATIARRYDEGGAGRGRDRLQLLLKEQGDVNLDDVKKYDDEDXXXXXXXXXXXXXXXXXXXXXXALEKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQSNSSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 235
BLAST of mRNA_H-paniculata_contig1795.4319.1 vs. uniprot
Match: A0A8K1CHA0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHA0_PYTOL) HSP 1 Score: 152 bits (385), Expect = 1.400e-41 Identity = 131/241 (54.36%), Postives = 160/241 (66.39%), Query Frame = 1
Query: 1 MTTAHRPTWVAAQGAASDSGNWSTGGQASQAVSSWDLPSQTKLKFRQTGQNSERELRKRDARAEVEDSERRAFDSKPIGSSRRYDEGGGGRGRERLQLLLKEQVEVNLDDVK----KYDDAXXXXXXXXXXXXXXXXXXXXXXXXLEKELEKIRXXXXXXXXXXXXXXAEVEEKRKREAAMTGNILLTQNTSS---QVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 702
MTTAHRPTW AA G ++ G W +GGQ SQ S+ DLP TKLK RQ GQ + E+ RD RAE+E E++ + K ++ D+ ++L LL + + +K KYDDA XXXXXXXXXXXXXXXXXXX L +ELEKI+ XXXXXXXXXXXX E EK RE + GN L ++S ++KRRWNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL KY++
Sbjct: 1 MTTAHRPTWHAAVGQKNE-GGWQSGGQVSQQFSARDLPGHTKLKIRQVGQGTANEIELRDLRAELEGREQQYEEEKGKSNNTAQDKLRRLEENKKLLLLGDAEADARESQLKSVASKYDDADDVXXXXXXXXXXXXXXXXXXXAELMRELEKIKKEXXXXXXXXXXXXREAAEKMAREEILQGNPLTQAASASGTAKMKRRWNDDVVFKNQSRNEPEVKKRFINDTIRNDFHRRFLNKYVQ 240
BLAST of mRNA_H-paniculata_contig1795.4319.1 vs. uniprot
Match: A0A7S2FJV3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FJV3_9STRA) HSP 1 Score: 149 bits (376), Expect = 2.520e-40 Identity = 126/239 (52.72%), Postives = 149/239 (62.34%), Query Frame = 1
Query: 1 MTTAHRPTWVAAQGAASDSGNWSTGGQASQAVSSWDLPSQTKLKFRQTGQNSERELRKRDARAEVEDSERRAFDSKPIGSSRRYDEGGGGR---GRERLQLLLKEQVEVNLDDVKKYDDAXXXXXXXXXXXXXXXXXXXXXXXXL-EKELEKIRXXXXXXXXXXXXXXAEVEEKRKREAAMTGN-ILLTQNTSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 702
MTTAHRPTWVA +G ASD GNWS GG+ S S D+P TKLK RQ Q + R E+E +E +A D K R E G + +L E+V+ + +KYDD XXXXXXXXXXXXXXXXXXXXXX L ++ELEKI+ A + EK +AA+ GN ++L SSQVKR+WNDDVVFK QARTEPE KKRFVNDTIRNDFHRRFL K+ K
Sbjct: 1 MTTAHRPTWVAGKGEASDYGNWSLGGKVSGQFSVKDMPGHTKLKMRQGEQIPDFVTRD-----ELESAEDKALDEKLKAKKRSALEDSSSSTVLGGAKPLMLKAEEVDTERIN-RKYDDGDXXXXXXXXXXXXXXXXXXXXXXELLQRELEKIKAEREKVRLEKEAEEAAIAEKTASDAALLGNPLMLGATKSSQVKRKWNDDVVFKNQARTEPEAKKRFVNDTIRNDFHRRFLAKFAK 233
BLAST of mRNA_H-paniculata_contig1795.4319.1 vs. uniprot
Match: A0A836C8J3_9STRA (Pre-mRNA-splicing factor Cwf15/Cwc15 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8J3_9STRA) HSP 1 Score: 147 bits (372), Expect = 1.050e-39 Identity = 134/236 (56.78%), Postives = 156/236 (66.10%), Query Frame = 1
Query: 1 MTTAHRPTWVAAQGAASDSGNWSTGGQASQAVSSWDLPSQTKLKFRQTGQNSERELRKRDARAEVEDSERRAFDSKPIGSSRR-YDEGGGGRGRERLQLLLKEQVEVNLDDVKKYDDAXXXXXXXXXXXXXXXXXXXXXXXXLEKELEKIRXXXXXXXXXXXXXXAEVEEKRKREAAMTGNILLTQ-NTSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 702
MTTAHRPTW A G ++ GNW+TGG + Q S+ D P KLKFRQ GQNSE EL++RD + +E E A + K G + + GG XXXXXXXXXXXXXXXXXXXXXX L+KELEKIR XXXXXXXXXXXXX +EAAM+GN+LL+ ++SQVKRRWNDDVVFKGQARTEP+ KKRFVNDTIR+DFHR FL KY+K
Sbjct: 1 MTTAHRPTWTPAVGTSNARGNWATGGLSWQ-FSAKDEPGHKKLKFRQLGQNSEAELKRRDLKTVLEAKEENAKEEKRTGRPAAVHGDAKGGDDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEALQKELEKIRRXXXXXXXXXXXXXXXXXXXXXQEAAMSGNVLLSMAQSTSQVKRRWNDDVVFKGQARTEPQVKKRFVNDTIRSDFHRSFLKKYVK 235
BLAST of mRNA_H-paniculata_contig1795.4319.1 vs. uniprot
Match: K3WMS3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMS3_GLOUD) HSP 1 Score: 146 bits (369), Expect = 3.280e-39 Identity = 124/240 (51.67%), Postives = 154/240 (64.17%), Query Frame = 1
Query: 1 MTTAHRPTWVAAQGAASDSGNWSTGGQASQAVSSWDLPSQTKLKFRQTGQNSERELRKRDARAEVEDSERRAFDSKPIGSSRRYDEGGGGRGRERLQLLLKEQVEVNLDDVK----KYDDAXXXXXXXXXXXXXXXXXXXXXXXXLEKELEKIRXXXXXXXXXXXXXXAEVEEKRKREAAMTGNILLTQNT--SSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 702
MTTAHRPTW AA G A++ G W GG S+ S+ DLP+ KLK+RQ GQ + E+ D RAE+E E + + K D+ ++L LL + + +K KYDDA XXXXXXXXXXXXXXL +ELEKI+ XXXXXXXXXXXXX E+ R + GN LL Q++ S+++KRRWNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL+KYI+
Sbjct: 1 MTTAHRPTWHAAVGQANE-GGWQAGGALSEQFSARDLPAHKKLKYRQVGQGTANEVELLDLRAELEGKEEKYEEEKGKKKDTALDKLRRLEENKKLLLLGDSEADARESQLKSIASKYDDADEIGDSDDSSXXXXXXXXXXXXXXLMRELEKIKRXXXXXXXXXXXXXXXASEQESRVEILQGNPLLQQSSGGSAKMKRRWNDDVVFKNQSRNEPELKKRFINDTIRNDFHRRFLSKYIQ 239
BLAST of mRNA_H-paniculata_contig1795.4319.1 vs. uniprot
Match: A0A3F2RN91_9STRA (Uncharacterized protein n=4 Tax=Peronosporaceae TaxID=4777 RepID=A0A3F2RN91_9STRA) HSP 1 Score: 145 bits (367), Expect = 6.500e-39 Identity = 128/249 (51.41%), Postives = 154/249 (61.85%), Query Frame = 1
Query: 1 MTTAHRPTWVAAQGAASDSGNWSTGGQASQAVSSWDLPSQTKLKFRQTGQNSERELRKRDARAEVEDSERRAFDSKPIGSSRRYDEGGGGRGRERLQLLLKEQVEVNLDDVK-------------KYDDAXXXXXXXXXXXXXXXXXXXXXXXXLEKELEKIRXXXXXXXXXXXXXXAEVEEKRKREAAMTGNILLTQNT--SSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 702
MTTAHRPTW AA G A++ G W GGQ S VS+ DLP LK RQ GQ + E+ D R E+E E ++ + R+ D E+L+ L K + + L DV+ KYDDA XXXXXXXXXXXXXX L +ELEKI+ XXXXXXXXXXXX V E++ RE + GN L Q T S+++KRRWNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL KYI+
Sbjct: 1 MTTAHRPTWHAAVGQANE-GGWQAGGQLSDQVSARDLPGHKHLKMRQVGQGTANEVELLDLRTELERKE----ETYEVEKGRKKDT-----ALEKLRRLEKNKKILLLGDVETDARESQLKNVASKYDDADDGGDSDGXXXXXXXXXXXXXXAELMRELEKIKQEXXXXXXXXXXXXXXVAEQQSREEVLQGNPLTQQQTAGSAKMKRRWNDDVVFKNQSRNEPEVKKRFINDTIRNDFHRRFLNKYIQ 239
BLAST of mRNA_H-paniculata_contig1795.4319.1 vs. uniprot
Match: A0A2D4BX11_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BX11_PYTIN) HSP 1 Score: 144 bits (362), Expect = 3.790e-38 Identity = 133/248 (53.63%), Postives = 158/248 (63.71%), Query Frame = 1
Query: 1 MTTAHRPTWVAAQGAASDSGNWSTGGQASQAVSSWDLPSQTKLKFRQTGQNSERELRKRDARAEVEDSERRAFDSKPIGSS------RRYDEGGGGRGRERLQLLLKEQVEVNLDDVK----KYDDAXXXXXXXXXXXXXXXXXXXXXXXX-LEKELEKIRXXXXXXXXXXXXXXAEVEEKRKREAAMTGNILLTQNTSS---QVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 702
MTTAHRPTW AA G S+ G W TGGQ SQ S+ DLP TKLK RQ GQ + E+ RD RAE+E E++ + K S RR +E +++ LL + + +K KYDDA XXXXXXXXXXXXXXXXXXX L +ELEKI+ XXXXXXXXXXXX RE + GN L T+S ++KRRWNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL KY++
Sbjct: 1 MTTAHRPTWHAAVGQKSE-GGWQTGGQVSQQFSARDLPGHTKLKLRQVGQGTANEVEARDLRAELEGREQQYEEEKSKNSDSVQARLRRLEEN------KKILLLGDAEADARESQLKSVASKYDDADDVXXXXXXXXXXXXXXXXXXXEAELMRELEKIKKEXXXXXXXXXXXXXXXXXXXXREEILQGNPLTAAQTASANAKMKRRWNDDVVFKNQSRNEPELKKRFINDTIRNDFHRRFLNKYVQ 241
BLAST of mRNA_H-paniculata_contig1795.4319.1 vs. uniprot
Match: A0A485KPE0_9STRA (Aste57867_10048 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KPE0_9STRA) HSP 1 Score: 140 bits (354), Expect = 5.690e-37 Identity = 124/243 (51.03%), Postives = 151/243 (62.14%), Query Frame = 1
Query: 1 MTTAHRPTWVAAQGAASDSGNWSTGGQASQAVSSWDLPSQTKLKFRQTGQNSERELRKRDARAEVEDSERRAFDSKPIGSSRRYDEGGGGRGRERLQLLLK--EQVEVNLDDVKKYDDAXXXXXXXXXXXXXXXXXXXXXXXX-LEKELEKIRXXXXXXXXXXXXXXAEVEEKRKREAAMTGNILLTQNT------SSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 702
MTTA RPTW AA G ++ G W+ GGQ S S+ DLP QTKLK RQ GQ + EL +D + E+ + ER+ + K G + R +E LLLK E + D V KYDDA XXXXXXXXXXXXXXXX L +ELEKI+ XXXXX X EVEE +++E + GN L + S+ +KR+WNDDVVFK Q+R EPETKKRF+NDTIRNDFHRRFL YI+
Sbjct: 1 MTTAARPTWHAAVGQKNE-GGWNAGGQVSMQFSARDLPGQTKLKTRQIGQGTVDELGMKDLKGELSERERKYEEEK--GKEVDTAQQKMLRLKENKMLLLKGDEWEDRAKDVVAKYDDADDDTRQDSXXXXXXXXXXXXXXXXXLMRELEKIKKEXXXXXLXKEMVDREVEENQRKEEILLGNPLTSAQARNIPSGSATIKRKWNDDVVFKNQSRNEPETKKRFINDTIRNDFHRRFLKTYIQ 240
BLAST of mRNA_H-paniculata_contig1795.4319.1 vs. uniprot
Match: D0NV69_PHYIT (Uncharacterized protein n=23 Tax=Peronosporaceae TaxID=4777 RepID=D0NV69_PHYIT) HSP 1 Score: 136 bits (343), Expect = 2.360e-35 Identity = 109/239 (45.61%), Postives = 136/239 (56.90%), Query Frame = 1
Query: 1 MTTAHRPTWVAAQGAASDSGNWSTGGQASQAVSSWDLPSQTKLKFRQTGQNSERELRKRDARAEVEDSERRAFDSKPIGSSRRYDEGGGGRGRERLQLLLKEQVEVNLDDVK----KYDDAXXXXXXXXXXXXXXXXXXXXXXXXLEKELEKIRXXXXXXXXXXXXXXAEVEEKRKREAAMTGNILLTQNT--SSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYI 699
MTTAHRPTW AA G S+ G W GG+ S VS+ DLP+ +LK RQ GQ + E+ D R E+E E + K D+ +++ LL + + +K KY+DA XXXXXXXXXXXXXXX L +ELEKI+ + E + RE + GN L Q S+++KRRWNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL KYI
Sbjct: 1 MTTAHRPTWHAAVGQ-SNEGGWHAGGKLSDQVSARDLPAHKRLKMRQVGQGTANEVELLDLREELERKEEKYEVEKGRKKDTAQDKLRRLEENKKILLLGDAEADAKESQLKEVASKYNDADDGAGSEAXXXXXXXXXXXXXXXELMRELEKIKQEREEERLRKEEEARKTVELQSREEILQGNPLTQQQAAGSAKMKRRWNDDVVFKNQSRNEPEVKKRFINDTIRNDFHRRFLNKYI 238
BLAST of mRNA_H-paniculata_contig1795.4319.1 vs. uniprot
Match: A0A067BVG0_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BVG0_SAPPC) HSP 1 Score: 135 bits (341), Expect = 4.320e-35 Identity = 114/239 (47.70%), Postives = 145/239 (60.67%), Query Frame = 1
Query: 1 MTTAHRPTWVAAQGAASDSGNWSTGGQASQAVSSWDLPSQTKLKFRQTGQNSERELRKRDARAEVEDSERRAFDSKPIGSSRRYDEGGGGRGRERLQLLLK-EQVEVNLDDVK-KYDDAXXXXXXXXXXXXXXXXXXXXXXXXLEKELEKIRXXXXXXXXXXXXXXAEVEEKRKREAAMTGNILLTQNT---SSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 702
MTTA RPT+ AA G ++ G W++GGQ S S+ DLP TKLK RQ GQ + EL +RD E+ D ER+ + K + + R ++ LLLK ++ E DV+ KYDDA XXXXXXXXXXXXXXX L +ELEKI+ X + EEKR ++ + GN L + S+ +KR+WNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL YI+
Sbjct: 1 MTTAARPTFNAAMGKKNE-GGWNSGGQISMQFSARDLPGHTKLKTRQLGQGTSDELAERDLIGELTDRERKYEEDKLKEVD--FAQQKIMRLKDNKTLLLKGDEWEDRAKDVQTKYDDADDDVGDXXXXXXXXXXXXXXXEAELMRELEKIKREREEERLRKEQAXXDEEEKRAKDEVLMGNPLTSAMAPAGSATIKRKWNDDVVFKNQSRNEPELKKRFINDTIRNDFHRRFLKAYIQ 236 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1795.4319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1795.4319.1 >prot_H-paniculata_contig1795.4319.1 ID=prot_H-paniculata_contig1795.4319.1|Name=mRNA_H-paniculata_contig1795.4319.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=235bp MTTAHRPTWVAAQGAASDSGNWSTGGQASQAVSSWDLPSQTKLKFRQTGQback to top mRNA from alignment at H-paniculata_contig1795:14123..17268- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1795.4319.1 ID=mRNA_H-paniculata_contig1795.4319.1|Name=mRNA_H-paniculata_contig1795.4319.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3146bp|location=Sequence derived from alignment at H-paniculata_contig1795:14123..17268- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1795:14123..17268- >mRNA_H-paniculata_contig1795.4319.1 ID=mRNA_H-paniculata_contig1795.4319.1|Name=mRNA_H-paniculata_contig1795.4319.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1410bp|location=Sequence derived from alignment at H-paniculata_contig1795:14123..17268- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |