mRNA_H-paniculata_contig1795.4317.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1795.4317.1
Unique NamemRNA_H-paniculata_contig1795.4317.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1795.4317.1 vs. uniprot
Match: A0A6H5K242_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K242_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 9.890e-5
Identity = 19/37 (51.35%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:    6 EKPTDIIFQMDTGERRKISSNTGIHQGEGLGPALFCM 116
            E P   I+ MD+GERR I   +G+ QG+G+GP LFC 
Sbjct:   51 EIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCF 87
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1795.4317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K242_9PHAE9.890e-551.35Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1795contigH-paniculata_contig1795:2232..2741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size511
Cds size510
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929401.3703182-CDS-H-paniculata_contig1795:2231..27411622929401.3703182-CDS-H-paniculata_contig1795:2231..2741Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1795 2232..2741 +
1691480844.9934227-CDS-H-paniculata_contig1795:2231..27411691480844.9934227-CDS-H-paniculata_contig1795:2231..2741Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1795 2232..2741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1795.4317.1prot_H-paniculata_contig1795.4317.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1795 2232..2741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1795.4317.1

>prot_H-paniculata_contig1795.4317.1 ID=prot_H-paniculata_contig1795.4317.1|Name=mRNA_H-paniculata_contig1795.4317.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=170bp
MGRSRQTSFSRWTPVNAGKSLRTRESTRAKDWDPPSSACRGTDLAHMPRT
IRGSEGGAIGLPGRSGAGNVGADGRKLTGDPFPRARASTHRSVDQQRQDE
GGAPNEPHPHRKGDRRAGNDGHPHRRGRGVCGGGYTDWDRRIRSAACRHS
SQGKGGRTPCAPTSAYARHT
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mRNA from alignment at H-paniculata_contig1795:2232..2741+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1795.4317.1 ID=mRNA_H-paniculata_contig1795.4317.1|Name=mRNA_H-paniculata_contig1795.4317.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=510bp|location=Sequence derived from alignment at H-paniculata_contig1795:2232..2741+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGAGAAGCCGACAGACATCATTTTCCAGATGGACACCGGTGAACGC
AGGAAAATCTCTTCGAACACGGGAATCCACCAGGGCGAAGGACTGGGACC
CGCCCTCTTCTGCATGCCGTGGGACCGATCTTGCGCATATGCCGAGAACA
ATTCGAGGCTCTGAAGGTGGAGCTATTGGGCTACCTGGACGATCTGGTGC
TGGCAACGTGGGAGCTGACGGAAGAAAACTTACGGGCGATCCATTTCCTC
GCGCAAGAGCTAGCACGCATAGGAGTGTAGATCAACAACGCCAAGACGAA
GGCGGTGCCCCCAATGAACCACATCCCCACCGAAAGGGAGATCGCCGCGC
TGGCAACGATGGGCATCCGCATCGCAGAGGGAGGGGTGTGTGTGGTGGTG
GATACACCGATTGGGACCGACGCATTCGTTCAGCAGCATGCCGGCACAGT
AGTCAAGGAAAAGGGGGCAGAACACCTTGCGCGCCTACTAGCGCATATGC
CCGACACACA
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Coding sequence (CDS) from alignment at H-paniculata_contig1795:2232..2741+

>mRNA_H-paniculata_contig1795.4317.1 ID=mRNA_H-paniculata_contig1795.4317.1|Name=mRNA_H-paniculata_contig1795.4317.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at H-paniculata_contig1795:2232..2741+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGAGAAGCCGACAGACATCATTTTCCAGATGGACACCGGTGAACGC
AGGAAAATCTCTTCGAACACGGGAATCCACCAGGGCGAAGGACTGGGACC
CGCCCTCTTCTGCATGCCGTGGGACCGATCTTGCGCATATGCCGAGAACA
ATTCGAGGCTCTGAAGGTGGAGCTATTGGGCTACCTGGACGATCTGGTGC
TGGCAACGTGGGAGCTGACGGAAGAAAACTTACGGGCGATCCATTTCCTC
GCGCAAGAGCTAGCACGCATAGGAGTGTAGATCAACAACGCCAAGACGAA
GGCGGTGCCCCCAATGAACCACATCCCCACCGAAAGGGAGATCGCCGCGC
TGGCAACGATGGGCATCCGCATCGCAGAGGGAGGGGTGTGTGTGGTGGTG
GATACACCGATTGGGACCGACGCATTCGTTCAGCAGCATGCCGGCACAGT
AGTCAAGGAAAAGGGGGCAGAACACCTTGCGCGCCTACTAGCGCATATGC
CCGACACACAATGGGGAGAAGCCGACAGACATCATTTTCCAGATGGACAC
CGGTGAACGCAGGAAAATCTCTTCGAACACGGGAATCCACCAGGGCGAAG
GACTGGGACCCGCCCTCTTCTGCATGCCGTGGGACCGATCTTGCGCATAT
GCCGAGAACAATTCGAGGCTCTGAAGGTGGAGCTATTGGGCTACCTGGAC
GATCTGGTGCTGGCAACGTGGGAGCTGACGGAAGAAAACTTACGGGCGAT
CCATTTCCTCGCGCAAGAGCTAGCACGCATAGGAGTGTAGATCAACAACG
CCAAGACGAAGGCGGTGCCCCCAATGAACCACATCCCCACCGAAAGGGAG
ATCGCCGCGCTGGCAACGATGGGCATCCGCATCGCAGAGGGAGGGGTGTG
TGTGGTGGTGGATACACCGATTGGGACCGACGCATTCGTTCAGCAGCATG
CCGGCACAGTAGTCAAGGAAAAGGGGGCAGAACACCTTGCGCGCCTACTA
GCGCATATGCCCGACACACA
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