mRNA_H-paniculata_contig17944.4316.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17944.4316.1
Unique NamemRNA_H-paniculata_contig17944.4316.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17944.4316.1 vs. uniprot
Match: D8LU71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU71_ECTSI)

HSP 1 Score: 307 bits (786), Expect = 1.920e-94
Identity = 171/300 (57.00%), Postives = 217/300 (72.33%), Query Frame = 1 
Query:   10 QVFSHSRLVLRNVAGTLGNLTPVL--KSTPTGGKAHSNDGPTIYTVLRKLSEVDDLCVLFRSSAILYGLTRKPNWLRLLPDLTEVSKILLKLFRSGVLQTQNYCLQAFFNLAHNQEFALAVINS-DLMEDFIVACMVQTNRRETPWQSPIYSILAWHNSHIKEMSSQVLYYLISNPTTRIAVFTGKGLWTLMQLAAVSSSVVAMRLALLALFNLSCDLRANHKWIDENIVAVVLDFDDEVLGAPAYPGLLYLLSTH-RRLANTLTSTRIAREARVKTEGLKFLRRNRAREEDEKFMARAT 897
            Q  S   +VLR+V+G LGNL+ V+   S+  GG        T++  L++L+ VDD  + FR+SAILYGLTRK +++ +LPDL  +  ++ KLFRSGV QTQNYCLQAF N+AHN++FA ++ +  DLME FIV CMV TN                 +S++KEMSS+VLYYLISNP+TR+    G+GLW L+QLA  + S V+MRLALLALFNL+CDLR N +W++EN VA VLDFDDEVLGAPA+ GLLYL STH RRL+  L STR+A EARVK EG KFL+R+RA EED+KFMAR T
Sbjct:  112 QALSPRLVVLRHVSGVLGNLSRVIVASSSDEGGPPRWKSRITLFDALKRLACVDDQRLAFRTSAILYGLTRKRDYVNILPDLRGLGDVIFKLFRSGVPQTQNYCLQAFCNMAHNKDFAASIASDPDLMEGFIVGCMVHTN-----------------SSYMKEMSSEVLYYLISNPSTRLTALKGQGLWALVQLADANGSTVSMRLALLALFNLACDLRENARWLNENTVAAVLDFDDEVLGAPAFTGLLYLASTHHRRLSQMLISTRMALEARVKIEGAKFLKRDRALEEDKKFMARTT 394
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17944.4316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LU71_ECTSI1.920e-9457.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17944contigH-paniculata_contig17944:953..4607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons7
Model size897
Cds size897
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929401.2313807-CDS-H-paniculata_contig17944:952..11231622929401.2313807-CDS-H-paniculata_contig17944:952..1123Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17944 953..1123 +
1691480844.916095-CDS-H-paniculata_contig17944:952..11231691480844.916095-CDS-H-paniculata_contig17944:952..1123Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17944 953..1123 +
1622929401.2468119-CDS-H-paniculata_contig17944:1494..16071622929401.2468119-CDS-H-paniculata_contig17944:1494..1607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17944 1495..1607 +
1691480844.9347856-CDS-H-paniculata_contig17944:1494..16071691480844.9347856-CDS-H-paniculata_contig17944:1494..1607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17944 1495..1607 +
1622929401.2608974-CDS-H-paniculata_contig17944:1890..20791622929401.2608974-CDS-H-paniculata_contig17944:1890..2079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17944 1891..2079 +
1691480844.9495304-CDS-H-paniculata_contig17944:1890..20791691480844.9495304-CDS-H-paniculata_contig17944:1890..2079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17944 1891..2079 +
1622929401.2738328-CDS-H-paniculata_contig17944:2428..25341622929401.2738328-CDS-H-paniculata_contig17944:2428..2534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17944 2429..2534 +
1691480844.9575422-CDS-H-paniculata_contig17944:2428..25341691480844.9575422-CDS-H-paniculata_contig17944:2428..2534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17944 2429..2534 +
1622929401.2853115-CDS-H-paniculata_contig17944:3038..31151622929401.2853115-CDS-H-paniculata_contig17944:3038..3115Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17944 3039..3115 +
1691480844.9678326-CDS-H-paniculata_contig17944:3038..31151691480844.9678326-CDS-H-paniculata_contig17944:3038..3115Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17944 3039..3115 +
1622929401.2982373-CDS-H-paniculata_contig17944:3615..37421622929401.2982373-CDS-H-paniculata_contig17944:3615..3742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17944 3616..3742 +
1691480844.9759421-CDS-H-paniculata_contig17944:3615..37421691480844.9759421-CDS-H-paniculata_contig17944:3615..3742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17944 3616..3742 +
1622929401.3205514-CDS-H-paniculata_contig17944:4493..46071622929401.3205514-CDS-H-paniculata_contig17944:4493..4607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17944 4494..4607 +
1691480844.984277-CDS-H-paniculata_contig17944:4493..46071691480844.984277-CDS-H-paniculata_contig17944:4493..4607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17944 4494..4607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17944.4316.1prot_H-paniculata_contig17944.4316.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17944 953..4607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17944.4316.1

>prot_H-paniculata_contig17944.4316.1 ID=prot_H-paniculata_contig17944.4316.1|Name=mRNA_H-paniculata_contig17944.4316.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=299bp
MRLQVFSHSRLVLRNVAGTLGNLTPVLKSTPTGGKAHSNDGPTIYTVLRK
LSEVDDLCVLFRSSAILYGLTRKPNWLRLLPDLTEVSKILLKLFRSGVLQ
TQNYCLQAFFNLAHNQEFALAVINSDLMEDFIVACMVQTNRRETPWQSPI
YSILAWHNSHIKEMSSQVLYYLISNPTTRIAVFTGKGLWTLMQLAAVSSS
VVAMRLALLALFNLSCDLRANHKWIDENIVAVVLDFDDEVLGAPAYPGLL
YLLSTHRRLANTLTSTRIAREARVKTEGLKFLRRNRAREEDEKFMARAT
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mRNA from alignment at H-paniculata_contig17944:953..4607+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17944.4316.1 ID=mRNA_H-paniculata_contig17944.4316.1|Name=mRNA_H-paniculata_contig17944.4316.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3655bp|location=Sequence derived from alignment at H-paniculata_contig17944:953..4607+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCCTCCAGGTTTTCTCTCACAGCCGATTGGTTTTACGCAATGTAGC
TGGGACGCTTGGGAACTTGACCCCTGTCTTAAAGTCCACACCAACGGGTG
GCAAGGCGCACAGCAACGACGGACCTACCATCTACACGGTATTGAGGAAA
CTATCCGAGGTTGACGATCTCGTAAGTCATCTAGCTGTACGGTCTTGATT
ACCCTTGGTACACTTGATGCATGCATGCACAGATAGACATGCACAACTAC
CGAGTCACCCGATGCGCTCGCTGCGACCTACAGAGAACACCCGTGGAAGA
CACCTAATCTCCCGATCTATCGTATGCGTTAAACAATGTCCATGATTTTT
GTTTGCCTTTGTCGAGAAAAATTGGTGATCAGCAAACGTTAGCCATATTT
GCCTGCATGTCATTCTTCTTGAGCGTTTTTCATGCTTTACACGGTGAATC
AGCCGCCAGCCCCAAACTCGTGACTTCGTTGGGCCAAAGAAAGGTAACTG
GTATCAATAATTTCTTTTATATATGTCTGTCTTGGATCACAGTGTGTGCT
ATTTCGGTCATCGGCGATCTTATACGGGCTGACTCGCAAGCCCAACTGGC
TCCGCCTTCTCCCTGACCTAACGGAGGTCAGCAAGATCCTCTTGAAGCTG
TTCAGGTATTGCGGGCATGAAAGTTTTGTTCAAACTTTCCGATCTCTCTC
TATTTATATAGTCCGAGTATATTAGCTAGCGAGTATATTAACCGGCGAAC
CTCGGCGCGGTCGCGTCATTCTACCGTCTGCAACAGTTCTGTCCGGTCCG
CACTCATGAGCATTTTGACACTATCTGGTGTAACCGTTACAGGATAAAGA
AAAAAGGTTATCACAGGAGTGCAAAAATGCAATCGCGAACGACACGATGG
ACTCAACATTGATTTGCTGGCAATTGTTGACGTGGCAGGTCTGGAGTGCT
GCAGACTCAGAACTACTGTCTACAAGCCTTCTTTAATCTGGCGCACAACC
AGGAGTTTGCTCTGGCTGTCATTAACTCGGACCTTATGGAAGATTTTATC
GTGGCATGTATGGTACAGACAAACAGGCGAGAGACGCCCTGGCAATCTCC
AATATACAGTATCTTAGCCTGGCACAAGTGAGAAAGTTCGTGAAGGTGAT
CTACTAAACGGTTCATGCATTCATATCCAGCTATGCCGTCGGTCAGTCAA
CTCGCACCTTTCAACTCTGCGAATACCAACCTAAATGTTTGCGTTCGAAC
CGCAGAACGAAGCGTGTGGTCCCGTAAATAGGTACGGCATGTAACGCTAT
ACTTCCCATCAAGGGGAGGTCGGGACGCAACCGGAGCATGCAGACGCTCC
CAACTGCCCTCCGCATCTCGTAGACTTCTAACAAAACATTTCGCAGTATA
GTAATATGTGTTTGTCACCTGCCTCTTCAACGTCGAGGAATTAATCATCC
CTCGTCCGTTCTTATTTCGACTGCAGCTCACACATCAAGGAGATGTCTTC
CCAGGTGCTATATTACCTCATCTCCAACCCTACAACCAGGATCGCGGTCT
TCACAGGGAAAGGGCTATGGACGCTAATGCAGGTATGCGAAGAAGTTCAG
CTGGATTGGGGTACAGAGCGGGAATAGCCGAGAATGCCGCGCAAAATATT
ACACCACCAAGCGAAGACCATGGAAGGAGATCTACAAGTTCCAATACATG
CGAGCGTGTTTCAGTCAGACTAGTATGATTACATTTGTTGCGTCCTGGTG
ATAGAATCGCGTGGTCCTGTTGGGCGGTCTATATCAGTGGAGCTTGCCAA
TGTAAACTATCCCTCGAACAAGGGTGTACAATGCGTTTGTCTCCATTTGT
ACGAAAGAGCTGGCTCAATAGCAGTAATAGCACTTGAAATTGCTCGTGTT
AGGAGACAGCAAACATGGTGTGAAGCACGTTGATATTGCCCCTGTTGACA
TCTGCATCATGTAATCATTTCACTGCTTAATCTCTGCGCAACTACTGTAC
CTGGCCCTAAATGCACTCCCTCTGCCAGTCCCCCCAATCCATAAACGCGT
GCTATCAAAAACAACTTTTGCAACACAAATAATCAGCTGGCAGCAGTGAG
CAGCAGCGTGGTCGCCATGCGTCTTGCTCTTTTGGCCCTGTTCAACTTGT
CGTGTGATCTCCGGTGGGTGCACATATTCGAAACATTGACACCAAGACAG
CACGTTGGTGAATCTAGACTCCAGACCGAAATTCGGGTATAGTTACTGTC
TGGCGCCGTTGAGCTGCGTGTATGGTCTATGGTATATGTTGTGATGTCCT
TGGATGCCGGTGTGCATTTCGTTGAAGCCCGATACCCCTGCAACAATTCG
GTATCAATGTGTTGACCGGCAAAGACTCTTCTTTGATCAAGGGCTCGTGT
CGATGTTTCATGCTCCTGAATGAAATACAAAATAAGCACGCGTTTGAACG
AGGCCCTGCTTTGCTGCTTCGCTACTTCGCCGCGTCGATAAGGAATGACC
ATGGTGCCGGGAAATATGTTATAATGCTTTTTGTCGAGATGTTGATTAAT
CTGTTCCTATCTCTAGCTTTCCCTACCGTCGCCAATCAACAATCAACTAC
CTGGGCATGCTCCATGCCGTTCAATGTACTTGGGGAAACTCGTCTCTGCT
TTCACCGGCGCAGGGCAAATCACAAGTGGATAGACGAAAATATCGTGGCC
GTGGTGCTTGACTTCGATGATGAGGTCCTAGGCGCACCGGCTTATCCTGG
CTTGCTGTACCTGCTTTCCACGCATCGCCGTCTCGCTAACGTGAGCGACG
CAAAGTGTAATCAGCGTCAATAAGCTATCAGCTGATAGCTGGTTCACATG
CCGTGGGGACATTATGATATGTTGCGTTGCGAAGTTGTGCCGCGTTGTGG
GGCGTACGAGTTAGGCTATGAGGCGTACGAGGTGTGACGAGTTCTCTCAA
TTATCATTCGTTTCGAGTGTGTACTCTGCATACCATTTCATTCATCGTGT
GTGATCGAGACTCCTTTGACATCCAGCTCCACCGAGAACCTATTTTAAAG
CTAAGTATTTCTAGAAACTTGGGGGAGTTTCAGACTGGTGTTTCACCACT
CAGGGTGCTCTAGGTCAGGTGTTACCACCTGATAGTGGGGGTAGTCGCTG
GCTTTCGATGCTCCACCAGGGTATTTGTAGTGTGCTGAGGTCTGGACGTG
GGAATCTCCGTTCATCAAATCCAAACGTTGCTCCAGCGCTACCACTGACC
AATCAAAACGCCTACTCTCGGAAGCTAACTCAATTCTAACTATCATTTGG
GGTTGATTCTATAGTAGCCGTCACCTTTGAGGCTTGTAAAGCAGGTGCTT
GAATTATGCCGCCTTGATTTCGCAAGTATGTGGAGATGGGCGGAGGGGGG
GTGCAGGAAACGGACTTTTCTAGCAACCACCTGATATTGGTTGCACTAAG
AGAAGCGTTTAGCAACAATTTGGTAGCCGCGTGAGTCTACTAGGTTTTAC
CTGATCTCACTTTGGTCTTGACCCTCCTAAATCCGAAACAGACTCTGACT
TCGACGAGGATAGCTCGAGAGGCGAGGGTGAAGACGGAAGGTCTCAAATT
CTTACGCAGAAATCGGGCCCGGGAGGAAGACGAAAAGTTCATGGCAAGAG
CCACT
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Coding sequence (CDS) from alignment at H-paniculata_contig17944:953..4607+

>mRNA_H-paniculata_contig17944.4316.1 ID=mRNA_H-paniculata_contig17944.4316.1|Name=mRNA_H-paniculata_contig17944.4316.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1794bp|location=Sequence derived from alignment at H-paniculata_contig17944:953..4607+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCCTCCAGGTTTTCTCTCACAGCCGATTGGTTTTACGCAATGTAGC
TGGGACGCTTGGGAACTTGACCCCTGTCTTAAAGTCCACACCAACGGGTG
GCAAGGCGCACAGCAACGACGGACCTACCATCTACACGGTATTGAGGAAA
CTATCCGAGGTTGACGATCTCATGCGCCTCCAGGTTTTCTCTCACAGCCG
ATTGGTTTTACGCAATGTAGCTGGGACGCTTGGGAACTTGACCCCTGTCT
TAAAGTCCACACCAACGGGTGGCAAGGCGCACAGCAACGACGGACCTACC
ATCTACACGGTATTGAGGAAACTATCCGAGGTTGACGATCTCTGTGTGCT
ATTTCGGTCATCGGCGATCTTATACGGGCTGACTCGCAAGCCCAACTGGC
TCCGCCTTCTCCCTGACCTAACGGAGGTCAGCAAGATCCTCTTGAAGCTG
TTCAGTGTGTGCTATTTCGGTCATCGGCGATCTTATACGGGCTGACTCGC
AAGCCCAACTGGCTCCGCCTTCTCCCTGACCTAACGGAGGTCAGCAAGAT
CCTCTTGAAGCTGTTCAGGTCTGGAGTGCTGCAGACTCAGAACTACTGTC
TACAAGCCTTCTTTAATCTGGCGCACAACCAGGAGTTTGCTCTGGCTGTC
ATTAACTCGGACCTTATGGAAGATTTTATCGTGGCATGTATGGTACAGAC
AAACAGGCGAGAGACGCCCTGGCAATCTCCAATATACAGTATCTTAGCCT
GGCACAAGTCTGGAGTGCTGCAGACTCAGAACTACTGTCTACAAGCCTTC
TTTAATCTGGCGCACAACCAGGAGTTTGCTCTGGCTGTCATTAACTCGGA
CCTTATGGAAGATTTTATCGTGGCATGTATGGTACAGACAAACAGGCGAG
AGACGCCCTGGCAATCTCCAATATACAGTATCTTAGCCTGGCACAACTCA
CACATCAAGGAGATGTCTTCCCAGGTGCTATATTACCTCATCTCCAACCC
TACAACCAGGATCGCGGTCTTCACAGGGAAAGGGCTATGGACGCTAATGC
AGCTCACACATCAAGGAGATGTCTTCCCAGGTGCTATATTACCTCATCTC
CAACCCTACAACCAGGATCGCGGTCTTCACAGGGAAAGGGCTATGGACGC
TAATGCAGCTGGCAGCAGTGAGCAGCAGCGTGGTCGCCATGCGTCTTGCT
CTTTTGGCCCTGTTCAACTTGTCGTGTGATCTCCGCTGGCAGCAGTGAGC
AGCAGCGTGGTCGCCATGCGTCTTGCTCTTTTGGCCCTGTTCAACTTGTC
GTGTGATCTCCGGGCAAATCACAAGTGGATAGACGAAAATATCGTGGCCG
TGGTGCTTGACTTCGATGATGAGGTCCTAGGCGCACCGGCTTATCCTGGC
TTGCTGTACCTGCTTTCCACGCATCGCCGTCTCGCTAACGGCAAATCACA
AGTGGATAGACGAAAATATCGTGGCCGTGGTGCTTGACTTCGATGATGAG
GTCCTAGGCGCACCGGCTTATCCTGGCTTGCTGTACCTGCTTTCCACGCA
TCGCCGTCTCGCTAACACTCTGACTTCGACGAGGATAGCTCGAGAGGCGA
GGGTGAAGACGGAAGGTCTCAAATTCTTACGCAGAAATCGGGCCCGGGAG
GAAGACGAAAAGTTCATGGCAAGAGCCACTACTCTGACTTCGACGAGGAT
AGCTCGAGAGGCGAGGGTGAAGACGGAAGGTCTCAAATTCTTACGCAGAA
ATCGGGCCCGGGAGGAAGACGAAAAGTTCATGGCAAGAGCCACT
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