mRNA_H-paniculata_contig17940.4314.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17940.4314.1
Unique NamemRNA_H-paniculata_contig17940.4314.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17940.4314.1 vs. uniprot
Match: D8LF64_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF64_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 3.020e-45
Identity = 75/100 (75.00%), Postives = 82/100 (82.00%), Query Frame = 1
Query:   16 NWNERFQDALSLPEATEDECYVKWQHLTTINRDFVAAAVTYGKTIISEYFLHAKDKSIRPRL-LGGVAGGKKYLWRGILFKLADGSSGPYCGNDEAAAKG 312
            NWNE FQ AL LPE T D+CY KW+ +TT+NRDF AAAVTYGKTIISEYFL  K KSI+P   LGG AGG K++WRGILFKLADGS GPY GNDEAAAKG
Sbjct:   10 NWNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLDLKHKSIKPNENLGGSAGGMKFVWRGILFKLADGSRGPYLGNDEAAAKG 109          
BLAST of mRNA_H-paniculata_contig17940.4314.1 vs. uniprot
Match: D7G5G9_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G9_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 3.900e-43
Identity = 75/99 (75.76%), Postives = 82/99 (82.83%), Query Frame = 1
Query:   16 NWNERFQDALSLPEATEDECYVKWQHLTTINRDFVAAAVTYGKTIISEYFLHAKDKSIRPRLLGGVAGGKKYLWRGILFKLADGSSGPYCGNDEAAAKG 312
            NWNE FQ AL LPE T D+CY KW+ LTT+NRDF A AVTYGKTIISEYFL  + KSIR + LGGVAGG K++WRGILFKLADGS GPY GNDEAAAKG
Sbjct:  247 NWNELFQSALDLPEETPDQCYRKWERLTTVNRDFKATAVTYGKTIISEYFLETEHKSIRLKELGGVAGGMKFVWRGILFKLADGSKGPYLGNDEAAAKG 345          
BLAST of mRNA_H-paniculata_contig17940.4314.1 vs. uniprot
Match: A0A7S4DG52_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DG52_HETAK)

HSP 1 Score: 132 bits (333), Expect = 9.880e-38
Identity = 62/100 (62.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query:   10 GQNWNERFQDALSLPEATEDECYVKWQHLTTINRDFVAAAVTYGKTIISEYFLHAKDKSIRPRLLGGVAGGKKYLWRGILFKLADGSSGPYCGNDEAAAK 309
            G +WNERFQ A+SLPE+T++E  +K+  LT++NRDF+A A TY KT+ISEYFL    KS++    GG+AGG+KY WRGILFKLADG  GPY G+D AAAK
Sbjct:   37 GDDWNERFQHAISLPESTDEEKLLKYTLLTSVNRDFIATAETYAKTVISEYFLPEHLKSVKSGQFGGIAGGRKYCWRGILFKLADGQCGPYEGSDAAAAK 136          
BLAST of mRNA_H-paniculata_contig17940.4314.1 vs. uniprot
Match: D7G9G7_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G7_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 5.170e-37
Identity = 67/102 (65.69%), Postives = 80/102 (78.43%), Query Frame = 1
Query:    4 DTGQNWNERFQDALSLPEATEDECYVKWQHLTTINRDFVAAAVTYGKTIISEYFLHAKDKSIRPRLLGGVAGGKKYLWRGILFKLADGSSGPYCGNDEAAAK 309
            D G NWN+R+Q+ALSLP  T+ +   K + L  +  DFV  AVTYG+TIISEYFLH   KS++P+ LGG+AGGKKYLWRGILFKLADGS GPY G+DEAAAK
Sbjct:   95 DRGDNWNDRWQEALSLPNKTKMDINYKRRSLDAVYSDFVHTAVTYGRTIISEYFLHEYMKSVKPKRLGGLAGGKKYLWRGILFKLADGSQGPYGGSDEAAAK 196          
BLAST of mRNA_H-paniculata_contig17940.4314.1 vs. uniprot
Match: A0A835YKN4_9STRA (CLU domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKN4_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.160e-36
Identity = 67/103 (65.05%), Postives = 81/103 (78.64%), Query Frame = 1
Query:    1 QDTGQNWNERFQDALSLPEATEDECYVKWQHLTTINRDFVAAAVTYGKTIISEYFLHAKDKSIRPRLLGGVAGGKKYLWRGILFKLADGSSGPYCGNDEAAAK 309
            +D G NWN  FQ+A +LPEATE E   K   L T+ RDF AAAV YG+TIISE+FLH+  +SIRPR +GG AGGKK+L+RGILFKLADG+ GP+ G+DEAAAK
Sbjct:   26 EDLGDNWNALFQEAQALPEATEMERTYKHLLLATVYRDFTAAAVMYGRTIISEFFLHSYLRSIRPREVGGFAGGKKFLFRGILFKLADGAVGPWAGSDEAAAK 128          
BLAST of mRNA_H-paniculata_contig17940.4314.1 vs. uniprot
Match: A0A835ZAL9_9STRA (CLU domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL9_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.130e-28
Identity = 52/76 (68.42%), Postives = 65/76 (85.53%), Query Frame = 1
Query:   82 KWQHLTTINRDFVAAAVTYGKTIISEYFLHAKDKSIRPRLLGGVAGGKKYLWRGILFKLADGSSGPYCGNDEAAAK 309
            K+Q LT +N+DF++AAVTYG+TIISEYFL  + KS+ P L+GG+AGG+K+L RGILFKLADGS GPY G+DEAA K
Sbjct:   19 KYQALTALNKDFISAAVTYGRTIISEYFLKEEAKSVCPSLVGGIAGGRKFLLRGILFKLADGSRGPYDGSDEAAGK 94          
BLAST of mRNA_H-paniculata_contig17940.4314.1 vs. uniprot
Match: A0A2P6N2S8_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N2S8_9EUKA)

HSP 1 Score: 95.9 bits (237), Expect = 7.270e-21
Identity = 46/83 (55.42%), Postives = 62/83 (74.70%), Query Frame = 1
Query:   16 NWNERFQDALSLPEATEDECYVKWQHLTTINRDFVAAAVTYGKTIISEYFLHAKDKSIRPRL-LGGVAGGKKYLWRGILFKLA 261
            +WN+ FQ  L+LPE TEDE   K+  L+++N+DFV  A T+GK IISE +LHAK ++I P   +GGVAGG+KY++ GILFK A
Sbjct:  170 DWNDEFQKILALPENTEDEKLHKYSELSSLNKDFVHIAKTFGKIIISERYLHAKHRTINPTTEVGGVAGGEKYVYHGILFKFA 252          
BLAST of mRNA_H-paniculata_contig17940.4314.1 vs. uniprot
Match: UPI000644D258 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644D258)

HSP 1 Score: 91.3 bits (225), Expect = 2.900e-19
Identity = 50/101 (49.50%), Postives = 68/101 (67.33%), Query Frame = 1
Query:   10 GQNWNERFQDALSLPEATEDECYVKWQHLTTINRDFVAAAVTYGKTIISEYFLHAKDKSIRP-RLLGGVAGGKKYLWRGILFKLADGSSGPYCGNDEAAAK 309
            G  WNE+FQ  L LPE   D+ YVK++HL+++++DF+ AA+TYGK II E F+  + K+I     LGG AGG+KY++ GILFK A      Y GNDE + K
Sbjct:  329 GIGWNEKFQRLLLLPEDDLDKKYVKYKHLSSLSKDFLHAAITYGKIIIEEAFIDTRFKTIMSVPSLGGQAGGEKYVYNGILFKFASDWIKIY-GNDEFSMK 428          
BLAST of mRNA_H-paniculata_contig17940.4314.1 vs. uniprot
Match: A0A7R9UF47_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UF47_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 7.910e-19
Identity = 46/98 (46.94%), Postives = 64/98 (65.31%), Query Frame = 1
Query:   16 NWNERFQDALSLPEATEDECYVKWQHLTTINRDFVAAAVTYGKTIISEYFLHAKDKSIRPRLLGGVAGGKKYLWRGILFKLADGSSGPYCGNDEAAAK 309
            +WNER+Q  L LP+ +++E   +  HLT    DFVA A TYG  +ISE FL+ + K++    + G+AGG+KY +RGI FKLA G   PY G+  AA+K
Sbjct:   29 DWNERYQAGLRLPDGSDEEQRFRLAHLTATYADFVATATTYGMVLISELFLNEELKTMSFESVPGLAGGEKYQYRGIFFKLATGHE-PYGGDYNAASK 125          
BLAST of mRNA_H-paniculata_contig17940.4314.1 vs. uniprot
Match: L8HEJ1_ACACA (Protein unc-45 homolog B n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HEJ1_ACACA)

HSP 1 Score: 87.8 bits (216), Expect = 5.020e-18
Identity = 50/98 (51.02%), Postives = 61/98 (62.24%), Query Frame = 1
Query:   16 NWNERFQDALSLPEATEDECYVKWQHLTTINRDFVAAAVTYGKTIISEYFLHAKDKSIRPRLLGGVAGGKKYLWRGILFKLADGSSGPYCGNDEAAAK 309
            NWN+ FQD L   +  +  C        T+ +DFVAAA  YGK IISE FL  K K+I+P  +GGVAGG+KY+ RGILFK A    G Y G DE +AK
Sbjct: 1142 NWNKEFQDILGTGQQADKLC--------TLAKDFVAAAKMYGKIIISEVFLPYKQKTIKPISIGGVAGGEKYIHRGILFKFAMDWEGLY-GGDEYSAK 1230          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17940.4314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF64_ECTSI3.020e-4575.00Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G5G9_ECTSI3.900e-4375.76Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S4DG52_HETAK9.880e-3862.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D7G9G7_ECTSI5.170e-3765.69Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YKN4_9STRA2.160e-3665.05CLU domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835ZAL9_9STRA2.130e-2868.42CLU domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A2P6N2S8_9EUKA7.270e-2155.42Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
UPI000644D2582.900e-1949.50hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A7R9UF47_9STRA7.910e-1946.94Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
L8HEJ1_ACACA5.020e-1851.02Protein unc-45 homolog B n=1 Tax=Acanthamoeba cast... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17940contigH-paniculata_contig17940:3699..5062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.4
Seed ortholog evalue2.3e-37
Seed eggNOG ortholog2880.D7G5G9
KEGG koko:K02987
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
EggNOG free text desc.intracellular distribution of mitochondria
EggNOG OGsKOG1839@1,KOG1839@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons2
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929401.0851874-CDS-H-paniculata_contig17940:3698..38891622929401.0851874-CDS-H-paniculata_contig17940:3698..3889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17940 3699..3889 +
1691480844.8315623-CDS-H-paniculata_contig17940:3698..38891691480844.8315623-CDS-H-paniculata_contig17940:3698..3889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17940 3699..3889 +
1622929401.0958917-CDS-H-paniculata_contig17940:4941..50621622929401.0958917-CDS-H-paniculata_contig17940:4941..5062Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17940 4942..5062 +
1691480844.8436012-CDS-H-paniculata_contig17940:4941..50621691480844.8436012-CDS-H-paniculata_contig17940:4941..5062Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17940 4942..5062 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17940.4314.1prot_H-paniculata_contig17940.4314.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17940 3699..5062 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17940.4314.1

>prot_H-paniculata_contig17940.4314.1 ID=prot_H-paniculata_contig17940.4314.1|Name=mRNA_H-paniculata_contig17940.4314.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
QDTGQNWNERFQDALSLPEATEDECYVKWQHLTTINRDFVAAAVTYGKTI
ISEYFLHAKDKSIRPRLLGGVAGGKKYLWRGILFKLADGSSGPYCGNDEA
AAKG
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mRNA from alignment at H-paniculata_contig17940:3699..5062+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17940.4314.1 ID=mRNA_H-paniculata_contig17940.4314.1|Name=mRNA_H-paniculata_contig17940.4314.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1364bp|location=Sequence derived from alignment at H-paniculata_contig17940:3699..5062+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACACCGGCCAAAACTGGAACGAGCGTTTCCAAGATGCCTTGAGCCT CCCAGAAGCCACTGAGGACGAGTGCTACGTGAAGTGGCAGCACCTGACGA CGATTAACCGGGACTTCGTCGCTGCAGCCGTCACGTACGGCAAGACAATC ATTTCGGAATACTTTTTACACGCCAAGGATAAAAGCATCAGGTGGGCTGC AGAGAGCAAGCAGCATGTAGCGTACAAAACTGAACATAGCATATATCATA CCTATTTTGAATGAAACGTTAAAAAAAATCGCCCCCAAGGGTCATCACTA GCAGAGATCTATCTCCTTGGGCGGAAATCTGGAGATGTGGAATTTTTCAG ACTTTCAAAACGGACGTTAAAGAGCCAAAATTTACCCGAAAGAGCTGTCA ACTCTTGTTGTTCGGAGGGCAGCGTGGCAATAACGGTTGCCGATTATTCT CTTAAAAAATCGACTCTTGATTACGGCCCGATTTTTTATTTTTTTTCCAG ATTTCCAGATTTCCGCAAAAAATGCGTCTGCTAGTATTGGACCCTAAGCA AGAGTTAAACGTGTGGCTCGCGCAGCGTTCCAAGCTTAAACTAATGTGGC GGTGTTGTTTTCAACATTTGAGGTCATTATCCAAATATTTTCAACACTTG GTGAGTGTCTACTCTATTTTGGCTATCATCTAGATAGTTCTTTATGAAAT AGCGTAAAATATTTTGTGTTTATTCTTATTCCGTGTGGAGGGACGACAAA TCGAAGTTTTAGGTTGTGTAGTAGTGGAGTATAACTAGAGCTGGCGGACT ACGCTAGCCCGTTCAGTAATATTCGTGTTGAGTTCCCTGGACTCACGGAC TCGCTGCGCTCGCAATGGGGGCTTGCGCGGTGAATGGCAGTGCTCTCTTC GCTAGCGTTGGTTCGGTATGCTTGCATAAAATTTCGTTGTCCCTGTTGCG TGTCGCGTGAAACTTGTTAAAAAAAACATGGTGATATAACAGGATAACTG TTCCGAGAGTATTATCATGATTTTTTTTTGTATAATTTCACCATGTTGAA AATCAAGAAGAACGTTATTGTTGGCATATATGCTTGTTCCTTGTCACATA AAACTTGACAAAACAGTTGGGCAGATCACGGAAACTATTTCGAGAATAAT ATATCACCATTTGCTTTGTATCATTTTCCGGCTTGAGTCGACAAGGATTG CGTTGTGTTATGCGTTTTTGTTGTTATTGTTACTATTATTCAGACCAAGG CTGCTGGGCGGCGTCGCGGGCGGGAAAAAGTATTTATGGCGAGGCATTCT GTTCAAGCTTGCTGATGGCTCGAGCGGGCCATATTGTGGAAATGACGAGG CTGCTGCCAAAGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig17940:3699..5062+

>mRNA_H-paniculata_contig17940.4314.1 ID=mRNA_H-paniculata_contig17940.4314.1|Name=mRNA_H-paniculata_contig17940.4314.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig17940:3699..5062+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACACCGGCCAAAACTGGAACGAGCGTTTCCAAGATGCCTTGAGCCT
CCCAGAAGCCACTGAGGACGAGTGCTACGTGAAGTGGCAGCACCTGACGA
CGATTAACCGGGACTTCGTCGCTGCAGCCGTCACGTACGGCAAGACAATC
ATTTCGGAATACTTTTTACACGCCAAGGATAAAAGCATCAGCAGGACACC
GGCCAAAACTGGAACGAGCGTTTCCAAGATGCCTTGAGCCTCCCAGAAGC
CACTGAGGACGAGTGCTACGTGAAGTGGCAGCACCTGACGACGATTAACC
GGGACTTCGTCGCTGCAGCCGTCACGTACGGCAAGACAATCATTTCGGAA
TACTTTTTACACGCCAAGGATAAAAGCATCAGACCAAGGCTGCTGGGCGG
CGTCGCGGGCGGGAAAAAGTATTTATGGCGAGGCATTCTGTTCAAGCTTG
CTGATGGCTCGAGCGGGCCATATTGTGGAAATGACGAGGCTGCTGCCAAA
GGTACCAAGGCTGCTGGGCGGCGTCGCGGGCGGGAAAAAGTATTTATGGC
GAGGCATTCTGTTCAAGCTTGCTGATGGCTCGAGCGGGCCATATTGTGGA
AATGACGAGGCTGCTGCCAAAGGT
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