mRNA_H-paniculata_contig1794.4312.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1794.4312.1
Unique NamemRNA_H-paniculata_contig1794.4312.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1794.4312.1 vs. uniprot
Match: A0A6H5JP85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP85_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 5.900e-19
Identity = 50/127 (39.37%), Postives = 73/127 (57.48%), Query Frame = 1 
Query:  751 VSMIYYGARVVTDYVILALEPIRKPLFKMPLRHSPWSAGIHVAIAVAGWRFHRATLSSEQTRRVWGEMLPWLLPWVSTPSVNTFACGQGMLGVLEPVVRLAKKISDSLNTFHVTSCNFIDDPAEAMQ 1131
            +SM+YYGARVVTDYV+L  EP R+ L +M + H+PWSA IH  + + G+  HR  L + +                  P ++  A G G +G++EPVVR A KIS+ L+      C F++DP E ++
Sbjct:  479 LSMVYYGARVVTDYVVLVTEPARRKLGQMTIVHTPWSAVIHAGLTILGYCCHRNVLYTAEV-----------------PGLHPLAVGPGAVGLVEPVVRFAVKISEILSHIEFFKCKFVEDPVEMVK 588
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BLAST of mRNA_H-paniculata_contig1794.4312.1 vs. uniprot
Match: D8LTP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP1_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 1.640e-18
Identity = 48/127 (37.80%), Postives = 72/127 (56.69%), Query Frame = 1 
Query:  751 VSMIYYGARVVTDYVILALEPIRKPLFKMPLRHSPWSAGIHVAIAVAGWRFHRATLSSEQTRRVWGEMLPWLLPWVSTPSVNTFACGQGMLGVLEPVVRLAKKISDSLNTFHVTSCNFIDDPAEAMQ 1131
            +SM+YYG RVVTDYV+L  EP R+ L +M + H+PWSA IH  + + G+  HR+ L + +                  P ++  A G G +G++EPVVR A KIS+ L+      C F+ DP + ++
Sbjct:  272 LSMVYYGGRVVTDYVVLFTEPARRKLGQMTIVHTPWSAVIHAGLTILGYYCHRSALYTAEI-----------------PGLHPLAVGPGAVGLVEPVVRFAVKISEILSDIEFFRCKFVQDPVQMVK 381
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BLAST of mRNA_H-paniculata_contig1794.4312.1 vs. uniprot
Match: A0A6H5JS93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS93_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 5.660e-13
Identity = 41/119 (34.45%), Postives = 64/119 (53.78%), Query Frame = 1 
Query:  751 VSMIYYGARVVTDYVILALEPIRKPLFKMPLRHSPWSAGIHVAIAVAGWRFHRATLSSEQTRRVWGEMLPWLLPWVSTPSVNTFACGQGMLGVLEPVVRLAKKISDSLNTFHVTSCNFI 1107
            ++MIY+GARVVTDY+++  EPIR+ L  M   H+PWS  I   + V G+ +HR TL +                  S    +    G G +G++EP+VR+A  +S+ L+     + NF+
Sbjct:  144 MAMIYFGARVVTDYLVMVAEPIRRKLGLMTAVHTPWSGLIQAGLTVLGFSYHRHTLHT-----------------ASVTGFHPLVVGPGAVGLVEPLVRVAVWVSEVLHRIEFFTVNFV 245
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BLAST of mRNA_H-paniculata_contig1794.4312.1 vs. uniprot
Match: D8LTP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP3_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 2.920e-12
Identity = 40/118 (33.90%), Postives = 64/118 (54.24%), Query Frame = 1 
Query:  754 SMIYYGARVVTDYVILALEPIRKPLFKMPLRHSPWSAGIHVAIAVAGWRFHRATLSSEQTRRVWGEMLPWLLPWVSTPSVNTFACGQGMLGVLEPVVRLAKKISDSLNTFHVTSCNFI 1107
            +M+Y+GARVVTDY+++  EPIR+ L  M   H+PWS  I   + V G+ +HR TL +                  S    +    G G++G++EP+VR+A  +S+ L+     + NF+
Sbjct:  280 AMVYFGARVVTDYLVMTAEPIRRKLGLMTAVHTPWSGMIQAGLTVLGFYYHRHTLHT-----------------ASVTGFHPLVVGPGVVGLVEPLVRVAVWVSEVLHRIEFFTVNFV 380
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1794.4312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JP85_9PHAE5.900e-1939.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTP1_ECTSI1.640e-1837.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JS93_9PHAE5.660e-1334.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTP3_ECTSI2.920e-1233.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1794contigH-paniculata_contig1794:3789..8005 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1884
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1794.4312.1prot_H-paniculata_contig1794.4312.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1794 4545..7263 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929400.6763132-UTR-H-paniculata_contig1794:3788..45441622929400.6763132-UTR-H-paniculata_contig1794:3788..4544Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1794 3789..4544 +
1691480844.783699-UTR-H-paniculata_contig1794:3788..45441691480844.783699-UTR-H-paniculata_contig1794:3788..4544Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1794 3789..4544 +
1622929400.7229326-UTR-H-paniculata_contig1794:7263..74091622929400.7229326-UTR-H-paniculata_contig1794:7263..7409Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1794 7264..7409 +
1691480844.8162427-UTR-H-paniculata_contig1794:7263..74091691480844.8162427-UTR-H-paniculata_contig1794:7263..7409Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1794 7264..7409 +
1622929401.051371-UTR-H-paniculata_contig1794:7434..80051622929401.051371-UTR-H-paniculata_contig1794:7434..8005Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1794 7435..8005 +
1691480844.823444-UTR-H-paniculata_contig1794:7434..80051691480844.823444-UTR-H-paniculata_contig1794:7434..8005Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1794 7435..8005 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929400.6875942-CDS-H-paniculata_contig1794:4544..46091622929400.6875942-CDS-H-paniculata_contig1794:4544..4609Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1794 4545..4609 +
1691480844.794116-CDS-H-paniculata_contig1794:4544..46091691480844.794116-CDS-H-paniculata_contig1794:4544..4609Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1794 4545..4609 +
1622929400.6998603-CDS-H-paniculata_contig1794:6212..64321622929400.6998603-CDS-H-paniculata_contig1794:6212..6432Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1794 6213..6432 +
1691480844.8016353-CDS-H-paniculata_contig1794:6212..64321691480844.8016353-CDS-H-paniculata_contig1794:6212..6432Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1794 6213..6432 +
1622929400.7124226-CDS-H-paniculata_contig1794:7137..72631622929400.7124226-CDS-H-paniculata_contig1794:7137..7263Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1794 7138..7263 +
1691480844.8088176-CDS-H-paniculata_contig1794:7137..72631691480844.8088176-CDS-H-paniculata_contig1794:7137..7263Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1794 7138..7263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1794.4312.1

>prot_H-paniculata_contig1794.4312.1 ID=prot_H-paniculata_contig1794.4312.1|Name=mRNA_H-paniculata_contig1794.4312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
MIYYGARVVTDYVILALEPIRKPLFKMPLRHSPWSAGIHVAIAVAGWRFH
RATLSSEQTRRVWGEMLPWLLPWVSTPSVNTFACGQGMLGVLEPVVRLAK
KISDSLNTFHVTSCNFIDDPAEAMQAIAKTVARKAK*
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mRNA from alignment at H-paniculata_contig1794:3789..8005+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1794.4312.1 ID=mRNA_H-paniculata_contig1794.4312.1|Name=mRNA_H-paniculata_contig1794.4312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4217bp|location=Sequence derived from alignment at H-paniculata_contig1794:3789..8005+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAGAGCTCATTTTGCCACGGGTCCTTTCTGCCAGGCGTAGAGGTATAT
CGTAGGTATCGAGCGTTTAATAGTACACAGTTTACAGGTTATGTTTTCAC
CCCCCGGGTGATATGCCGTTTTTGAAGCTCGGTATATAGAACAAGTACCT
GTTGCTCGTGACTCGAAACTCGTGTTGTTGGAACGATCCATGTTTGTATT
TTCGAGTGGCTTTCTTTTTTTTCTTTTTTTTCTCACGTTGTCTTGGGATG
CCCCATTGTTTCCCTTTCATGTTTCAAAAAGTGTTGAAAGATATTTGCAC
TCTAGGGTTCTTATTTATAATAATAATGTGCATTTCTTGGAAAATGACCA
CCTCTCGGACGACCACGACTACATGGGACTATGTTAGAATCATACTTGCC
TGAGTTTGACTTGAGTTTCAGGATGTGCAGGATGGATGATGACACATAAA
ACGAAGTGTTTTCACCGGTGCATTTTCGTTTTACGAGTATTCCGAGCAGT
TGTAGATGGTCCGGTGCACATGGAATAAAAGGGCTGATTCTGAAACTCGT
GCGTCTCTGTTGTTTAGAATAATCGCTAACAGTCATAGTCGTTCGGGGGG
GTATAGATGACCGATTGCCTTGTATTGTGAATACTCTCGCTCTCGTTGTC
TTCACATGCCCGTTACCTACCCACCCTTCCACACCACACCTGCCTATCTA
TACATCTGCCTTTTTGCCTGCCTGGCTGCCTACTCTTGGCTTGGTTCTAG
GTGTCCATGATCTACTACGGAGCTAGGGTGGTGACCGACTACGTCATACT
AGCGCTCGAACCTATCCGCAAGTGAGGCAGGGTTTCAGGTCACCTGTTCT
CGACCGGATTGCCGTAGTTTCGAGCGGGTTCTTACTAACAAATATCGGAC
AACAGACGAATAGAGCAGATCGCGAACTGGTTGGCAAACGGAAGTATTTC
ACCCCCCCTGGACTAATGCAAGTACGTGGAGGACTCGCGACCAAAACTGG
AAAAAATGTTCGCTTGAGTGAATCTCAGAATGTGCGGGATGGATGATGAC
AGATGCCATAATTCAAGTCGTGACTCCTGTTTGTTTATATACTCTCTCCA
TGCCCATCGGTGAAGTCGGTTGAAATCATACAGAGACGTGACCATTTCCG
TCTGTTGTTTTTTTTCAATATATAATCCTGCATGTTTTAGGGGTTGATAC
CCGAAATTTCACGGATATTGGCGACATTCGTCGCGAGAGTGCGCGGCGCA
AAAAAAGCATGTGGGCCGAAAAAAGGTGACGGGTTTTGCCCCTGTTTGAA
TTTTCCGAATAGAAGAAACGTGAAAATAAAAAAAAACGAAAAACAAAACA
ATGAAAATGATCAAATCCTGATACCTGAATCGGAAAGCACTTCGAAATAG
CGCATATGAGTGTGTCAGATCTTAGCTTTTCAAGGATTCCAACTGCAGCC
TCTGAATGATCTTGAATCTCGACGTATGATTTCCAAACACAAACAAACGA
CTTTACTTATGGCACGGAGGACGTGGATATTAGATAATAACCAGATACTA
ACTTTATGGGAACCGGCGCTAAAGGGTTAAAAAGAAAGGCGACGCATGGG
CGTCAAGAATAAATCTGCCTTTGCTCAATCTCATGTATATACATATCTAC
AATCAGCAGATGGCAATGCGTCGTTGACTGCCATTTTCAAGTCATATCCC
CTTACTCTAGACTCCTCGGATGTTATCGTCGTGGCTGCGTCAATCTTGGT
GTGATGCTGTGCGATGATTGCACGCTTCCCCCCCCCTTCGATAATTTGGC
GGGCTTGTTGATAATTCAGTTAGCTATTTTGAAATATTTGAGTGTACATA
CCTTCGTTTGTTTATTTTTTCTGAAAAAAACAACAAAAAAACTTGTTTCA
AATCTCGATGTTCCGACCGTGTATTCATGTTTTAGACTCCCCCCTCTCTC
CTCGCAGGCAAAATAGTTGAAAGTCAAACTTAGGACGTCGGATGTTGACG
TCAAGGGGCGTAGGAAACAACGAAGTAGGCGAGGATGTCGACGAGGTGTA
TTTCAGTGTCGCCACGGTAGTGCGTGCCAGGACCGAATTCACATGGTGGG
TGCTAGTGCCCTCCCCTCTATACGAAAAAAAAATGGGAGAGAATCAGAGG
ATACGAAAGAGAGACGTTTGGATGCTGGAATTACGACAAAAAAGCGAAAG
CGGTGGTTCTTGGAGGGAGATGGTAGGTATGGGAGGGACAACATTTTGAC
CCGCATTCATTTGGCAGCGTAGGAAAGAGCGATTGGCCATCGAAAATCCC
TCCAAAATGGAAACACAGCTCCGTCCTCCCGAGCATGTGTGGGCAAAGGT
TCAAAAATCGCGGCAAGCAAATCGTGAGTGCTCCCCTCGCTCCCCTCGCT
GCGCTTCTCCCGCCACCCTCGTAGGCCTTTGTTTAAAATGCCGCTGAGGC
ACTCCCCGTGGTCGGCCGGTATTCATGTCGCGATCGCCGTGGCTGGTTGG
CGATTTCACCGAGCGACTTTGTCTAGTGAACAGACTCGACGTGTGTGGGG
GGAAATGCTTCCTTGGCTGTTACCCTGGGTGTCGACCCCGAGCGTGAACA
CGTTCGCTTGCGGACAGGGGATGTTGGGTGTACTGGAGCCTGTGGTGAGA
TTAACAGTTTCTCTCGTCTTGTTTTTTTTTTTAACATTAGGTCTGTGGAG
ACGATATTGTCGGAATGTTGCATTGATGTTGCCGGTGAGACTTGAACCGT
AGCGTGAAATTGCGCATTTATCCACAAGGGTTTGATGATACGTTTATTGT
TTTTTTCAAGATAGTAGTGAGCTGTATCGTGTGTGACGGATAGACCGCCT
GCCAACTAACTCTGTGTCTAGATAATCATTGGGAGTGTAGTCATCCCCGA
GTCCCAGCGGTATTTAACCACCTGCCGCTAAAATCACATGTTTGCTCCAG
GACCGTTGGTTCCTCATCTGCGAGCAAAACACACATACTTGGCAAACATT
CGAGGACCGCTTTTTTTCTTTTTGAGAGACCTGCAGGAAACCGGGGGGGA
ATTCTATTGATTTGTATGTGTACTTAACCGGATTATATCTAGTACTTTCG
TATCGTTTTTCGGTCCACAATTTAAAATATCCAATGGTTCGTATCTTGGA
TTGATTGTTGTGATGCTGTCCATAGTTTGTATCCTGCATGTACTAGGTTG
ATCGCGAAATATCCCATCATTGGACGTTCATTTTGTTTATTCATGCTCCC
CCCCCCCGCTCCTGTGCGTGGATACGTGTTTTCCTGTCTCTGTCTTGGTT
GCTGAACCTAACCGATCGGTTATGTTCTATTGTGATCTGTTGTGATCAGG
TGAGATTGGCGAAGAAAATCAGTGATTCACTTAACACGTTTCACGTGACC
AGCTGCAACTTCATTGACGATCCGGCGGAGGCGATGCAGGCAATCGCAAA
AACCGTTGCTAGGAAAGCAAAGTAGGGAGAGGAGGGAGAGCGAGACAGAC
AGAAGAGACAAGAGAAAAAGTGGCCAATATGAAGACTGCATGCAAGAACC
TTTACCTCTCTCGCGAGGTTCTGTAGTCAGGGTGTAACGGCGCCCTCCCC
CCGTGGGCTAATTACTTACGTTTGTCGGTCCTGAACTATATATATATATA
TATATATATATTCATTTTTTCCTGAAAACCCGCGGTTTTTGTTACTATGT
ACGAAGGAATACTACGCCTTGACATTGCAAAATTTTCGCCATTCGAAAGA
TGATATGTCAAGGTGTGTGAATATAGACAGACGACTGACTGGCTTTCTTG
ACTGACGGCGCAGTACTGTCTGTACGGGATTGTTTCTTTTGGAAACTTGA
CCTTGTGAAGAAACGAAAAATATAGGGCGCCTTACACGGTAAACTACATT
GATAATCGTGGTACAGGTTGGTCGTGGTGATTTCTTTTATAGAGATTTTG
GTCGTGATATCACTCCCGCTGTCGGCTTAACGTCGAGTAGCCAAATTTTA
GCGTCTTTTTTGTAGTTTTTTTTTTACGTACTTTGAAGTATGTGTATATA
GCGATCTGCGTATAAAAACGGAAACGTGTCGCCGTGTCATGTCAAGAGTA
CCCAGAAGTCAAGAAGCCATCGGTTATTGCCGGGGTTGTTTTGTGTAGTT
TCTGGTGCTTTCCGACAGGTCGTGGGCACTCACTCACGTTACTGTGCTAC
AAGCAGCTGAATGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1794:3789..8005+

>mRNA_H-paniculata_contig1794.4312.1 ID=mRNA_H-paniculata_contig1794.4312.1|Name=mRNA_H-paniculata_contig1794.4312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig1794:3789..8005+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCTACTACGGAGCTAGGGTGGTGACCGACTACGTCATACTAGCGCT
CGAACCTATCCGCAAATGATCTACTACGGAGCTAGGGTGGTGACCGACTA
CGTCATACTAGCGCTCGAACCTATCCGCAAGCCTTTGTTTAAAATGCCGC
TGAGGCACTCCCCGTGGTCGGCCGGTATTCATGTCGCGATCGCCGTGGCT
GGTTGGCGATTTCACCGAGCGACTTTGTCTAGTGAACAGACTCGACGTGT
GTGGGGGGAAATGCTTCCTTGGCTGTTACCCTGGGTGTCGACCCCGAGCG
TGAACACGTTCGCTTGCGGACAGGGGATGTTGGGTGTACTGGAGCCTGTG
GCCTTTGTTTAAAATGCCGCTGAGGCACTCCCCGTGGTCGGCCGGTATTC
ATGTCGCGATCGCCGTGGCTGGTTGGCGATTTCACCGAGCGACTTTGTCT
AGTGAACAGACTCGACGTGTGTGGGGGGAAATGCTTCCTTGGCTGTTACC
CTGGGTGTCGACCCCGAGCGTGAACACGTTCGCTTGCGGACAGGGGATGT
TGGGTGTACTGGAGCCTGTGGTGAGATTGGCGAAGAAAATCAGTGATTCA
CTTAACACGTTTCACGTGACCAGCTGCAACTTCATTGACGATCCGGCGGA
GGCGATGCAGGCAATCGCAAAAACCGTTGCTAGGAAAGCAAAGTAGGTGA
GATTGGCGAAGAAAATCAGTGATTCACTTAACACGTTTCACGTGACCAGC
TGCAACTTCATTGACGATCCGGCGGAGGCGATGCAGGCAATCGCAAAAAC
CGTTGCTAGGAAAGCAAAGTAG
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