mRNA_H-paniculata_contig17924.4307.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17924.4307.1
Unique NamemRNA_H-paniculata_contig17924.4307.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17924.4307.1 vs. uniprot
Match: A0A6H5L3H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H7_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 2.730e-34
Identity = 60/72 (83.33%), Postives = 64/72 (88.89%), Query Frame = 1
Query:    1 MGQKHGKAVYDEAARPFLNLSFAAIGTLWETFNDVADGFGINLHEFREICSELGAELVLNRAQLDKVGASKA 216
            MGQ+HGKAVYD AA+PFLNLS AA+GTLWETFNDVADGFGINLHEF EICSELG EL LNRA+LDKV  S A
Sbjct:    1 MGQRHGKAVYDSAAKPFLNLSLAAVGTLWETFNDVADGFGINLHEFLEICSELGEELQLNRAKLDKVKLSTA 72          
BLAST of mRNA_H-paniculata_contig17924.4307.1 vs. uniprot
Match: D7FR21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR21_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 5.190e-31
Identity = 57/70 (81.43%), Postives = 63/70 (90.00%), Query Frame = 1
Query:    1 MGQKHGKAVYDEAARPFLNLSFAAIGTLWETFNDVADGFGINLHEFREICSELGAELVLNRAQLDKVGAS 210
            MGQ+HGKAVYD AA+PFLNLS AA+GTLWETFNDVADGFGINLHEF EICSELG EL LNRA+LDK+  +
Sbjct:    1 MGQRHGKAVYDSAAKPFLNLSLAAVGTLWETFNDVADGFGINLHEFLEICSELGEELQLNRAKLDKLSTA 70          
BLAST of mRNA_H-paniculata_contig17924.4307.1 vs. uniprot
Match: K3XBQ5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBQ5_GLOUD)

HSP 1 Score: 71.2 bits (173), Expect = 8.660e-15
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    1 MGQKHGKAVYDEAARPFLNLSFAAIGTLWETFNDVADGFGINLHEFREICSELGAELVLN-RAQLDKV 201
            MGQ HGKA Y +AA PF+N S   +  LWETFNDVA+GFG+N  E  EIC  L   L ++ +A++D++
Sbjct:    1 MGQLHGKATYLKAATPFVNASEKDVNKLWETFNDVAEGFGLNQDEMCEICRALQPTLEIHSKAEIDQL 68          
BLAST of mRNA_H-paniculata_contig17924.4307.1 vs. uniprot
Match: A0A7S3ZW80_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZW80_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.010e-14
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    1 MGQKHGKAVYDEAARPFLNLSFAAIGTLWETFNDVADGFGINLHEFREICSELGAELVLNRAQLDK 198
            MGQ  GKA +D  AR F+NL   AI  LWE+FNDVADGFGI+L E + IC EL  EL ++R+ L+K
Sbjct:    1 MGQMVGKAKWDPRARIFMNLPPGAINALWESFNDVADGFGISLCEMQLICQELTTELEISRSALNK 66          
BLAST of mRNA_H-paniculata_contig17924.4307.1 vs. uniprot
Match: A0A7S3ZWB8_9STRA (Hypothetical protein n=6 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZWB8_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.040e-14
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    1 MGQKHGKAVYDEAARPFLNLSFAAIGTLWETFNDVADGFGINLHEFREICSELGAELVLNRAQLDK 198
            MGQ  GKA +D  AR F+NL   AI  LWE+FNDVADGFGI+L E + IC EL  EL ++R+ L+K
Sbjct:    1 MGQMVGKAKWDPRARIFMNLPPGAINALWESFNDVADGFGISLCEMQLICQELTTELEISRSALNK 66          
BLAST of mRNA_H-paniculata_contig17924.4307.1 vs. uniprot
Match: A0A5D6Y7G3_9STRA (EF-hand domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y7G3_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 8.560e-14
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    1 MGQKHGKAVYDEAARPFLNLSFAAIGTLWETFNDVADGFGINLHEFREICSELGAELVLN-RAQLDKVGAS 210
            MGQKHGKA    AA PF+N S   +  LWETFNDVA+GFG++  E  E+C  L   L ++ +A++D++ A+
Sbjct:    1 MGQKHGKAALVAAATPFVNASEKYVNKLWETFNDVAEGFGLSQDEASEVCRALQPALEIHAKAEMDQLTAA 71          
BLAST of mRNA_H-paniculata_contig17924.4307.1 vs. uniprot
Match: A0A2D4CGP0_PYTIN (EF-hand domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CGP0_PYTIN)

HSP 1 Score: 72.4 bits (176), Expect = 3.660e-13
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    1 MGQKHGKAVYDEAARPFLNLSFAAIGTLWETFNDVADGFGINLHEFREICSELGAELVLN-RAQLDKVGASKAT 219
            MGQ HGKA Y +AA PFLN S   +  LWE+FNDVA+GFG+N  E  EIC  L   L ++ R  +D++ A+  T
Sbjct:    1 MGQCHGKATYIKAAAPFLNASEKDVNRLWESFNDVAEGFGLNQDELSEICRTLMPTLEIHARVDMDQLSAALFT 74          
BLAST of mRNA_H-paniculata_contig17924.4307.1 vs. uniprot
Match: A0A2D4BE44_PYTIN (EF-hand domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BE44_PYTIN)

HSP 1 Score: 72.4 bits (176), Expect = 3.690e-13
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    1 MGQKHGKAVYDEAARPFLNLSFAAIGTLWETFNDVADGFGINLHEFREICSELGAELVLN-RAQLDKVGASKAT 219
            MGQ HGKA Y +AA PFLN S   +  LWE+FNDVA+GFG+N  E  EIC  L   L ++ R  +D++ A+  T
Sbjct:    1 MGQCHGKATYIKAAAPFLNASEKDVNRLWESFNDVAEGFGLNQDELSEICRTLMPTLEIHARVDMDQLSAALFT 74          
BLAST of mRNA_H-paniculata_contig17924.4307.1 vs. uniprot
Match: A0A7S3JT59_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JT59_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.500e-13
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    1 MGQKHGKAVYDEAARPFLNLSFAAIGTLWETFNDVADGFGINLHEFREICSELGAELVLNRAQLDKV 201
            MGQK GK  Y+     F+N+S   I ++WE FNDVADGFGINL E + IC +L  EL L+   L+K+
Sbjct:   14 MGQKVGKVAYEPNLESFINISTGGIESIWEAFNDVADGFGINLGETQLICGQLANELQLDVQALEKL 80          
BLAST of mRNA_H-paniculata_contig17924.4307.1 vs. uniprot
Match: F0YHF1_AURAN (EF-hand domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHF1_AURAN)

HSP 1 Score: 72.0 bits (175), Expect = 5.040e-13
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   16 GKAVYDEAARPFLNLSFAAIGTLWETFNDVADGFGINLHEFREICSELGAELVLNRAQLDK 198
            GKA Y   AR F+NLS  AI  +WE+FNDVADGFGI+L E + IC EL +EL + R  LDK
Sbjct:    3 GKARYHAKARAFVNLSAGAIEAVWESFNDVADGFGISLGEMQLICQELTSELEIGRPLLDK 63          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17924.4307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3H7_9PHAE2.730e-3483.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR21_ECTSI5.190e-3181.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K3XBQ5_GLOUD8.660e-1551.47Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S3ZW80_9STRA3.010e-1457.58Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3ZWB8_9STRA3.040e-1457.58Hypothetical protein n=6 Tax=Pelagomonas calceolat... [more]
A0A5D6Y7G3_9STRA8.560e-1447.89EF-hand domain-containing protein (Fragment) n=1 T... [more]
A0A2D4CGP0_PYTIN3.660e-1350.00EF-hand domain-containing protein (Fragment) n=1 T... [more]
A0A2D4BE44_PYTIN3.690e-1350.00EF-hand domain-containing protein n=1 Tax=Pythium ... [more]
A0A7S3JT59_9STRA4.500e-1350.75Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
F0YHF1_AURAN5.040e-1359.02EF-hand domain-containing protein n=1 Tax=Aureococ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17924contigH-paniculata_contig17924:703..921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.2
Seed ortholog evalue4.9e-26
Seed eggNOG ortholog2880.D7FR21
KEGG koko:K18595,ko:K18598
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule binding
EggNOG OGsCOG2319@1,KOG2106@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons1
Model size219
Cds size219
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929400.1345844-CDS-H-paniculata_contig17924:702..9211622929400.1345844-CDS-H-paniculata_contig17924:702..921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17924 703..921 -
1691480844.5047598-CDS-H-paniculata_contig17924:702..9211691480844.5047598-CDS-H-paniculata_contig17924:702..921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17924 703..921 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17924.4307.1prot_H-paniculata_contig17924.4307.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17924 703..921 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17924.4307.1

>prot_H-paniculata_contig17924.4307.1 ID=prot_H-paniculata_contig17924.4307.1|Name=mRNA_H-paniculata_contig17924.4307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
MGQKHGKAVYDEAARPFLNLSFAAIGTLWETFNDVADGFGINLHEFREIC
SELGAELVLNRAQLDKVGASKAT
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mRNA from alignment at H-paniculata_contig17924:703..921-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17924.4307.1 ID=mRNA_H-paniculata_contig17924.4307.1|Name=mRNA_H-paniculata_contig17924.4307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at H-paniculata_contig17924:703..921- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGACAAAAGCACGGGAAAGCGGTCTATGACGAAGCAGCGCGACCATT CTTAAACCTAAGCTTCGCTGCGATCGGTACTCTGTGGGAGACTTTTAACG ACGTGGCGGACGGTTTCGGTATTAACCTCCACGAGTTCAGAGAAATATGC TCGGAGCTCGGGGCGGAGCTTGTCCTCAACAGAGCCCAGCTAGACAAGGT GGGTGCGTCTAAGGCGACA
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Coding sequence (CDS) from alignment at H-paniculata_contig17924:703..921-

>mRNA_H-paniculata_contig17924.4307.1 ID=mRNA_H-paniculata_contig17924.4307.1|Name=mRNA_H-paniculata_contig17924.4307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig17924:703..921- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGACAAAAGCACGGGAAAGCGGTCTATGACGAAGCAGCGCGACCATT
CTTAAACCTAAGCTTCGCTGCGATCGGTACTCTGTGGGAGACTTTTAACG
ACGTGGCGGACGGTTTCGGTATTAACCTCCACGAGTTCAGAGAAATATGC
TCGGAGCTCGGGGCGGAGCTTGTCCTCAACAGAGCCCAGCTAGACAAGGT
GGGTGCGTCTAAGGCGACAATGGGACAAAAGCACGGGAAAGCGGTCTATG
ACGAAGCAGCGCGACCATTCTTAAACCTAAGCTTCGCTGCGATCGGTACT
CTGTGGGAGACTTTTAACGACGTGGCGGACGGTTTCGGTATTAACCTCCA
CGAGTTCAGAGAAATATGCTCGGAGCTCGGGGCGGAGCTTGTCCTCAACA
GAGCCCAGCTAGACAAGGTGGGTGCGTCTAAGGCGACA
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