mRNA_H-paniculata_contig17914.4305.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17914.4305.1
Unique NamemRNA_H-paniculata_contig17914.4305.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig17914.4305.1 vs. uniprot
Match: D7FRI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRI8_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 9.740e-6
Identity = 38/99 (38.38%), Postives = 54/99 (54.55%), Query Frame = 1 
Query:  133 HDIDDDTKAAIPFEVTVCSHDVDTCKYSNEYYFNSVQGSFATAPGTALGKGQRLNLPRPEAYT--IGILPTLITGQYIDISEVEIYLEVEGAEGTTTST 423
            H+ DD T+ +I F+V V    V T                 T+PGTALG GQR+N+P P+A    + +L  L + Q ID+SEVEIYL+V+  +    +T
Sbjct:   62 HESDDATQLSISFDVEVGYDTVHTD---------------LTSPGTALGAGQRVNMP-PDASGNYLHLLFDLTSDQAIDVSEVEIYLDVDDPDDVVVAT 144
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17914.4305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRI8_ECTSI9.740e-638.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17914contigH-paniculata_contig17914:2964..4567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size599
Cds size597
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929399.9778576-CDS-H-paniculata_contig17914:2964..31891622929399.9778576-CDS-H-paniculata_contig17914:2964..3189Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17914 2965..3189 -
1691480844.4290195-CDS-H-paniculata_contig17914:2964..31891691480844.4290195-CDS-H-paniculata_contig17914:2964..3189Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17914 2965..3189 -
1622929399.9916773-CDS-H-paniculata_contig17914:3846..40911622929399.9916773-CDS-H-paniculata_contig17914:3846..4091Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17914 3847..4091 -
1691480844.4396307-CDS-H-paniculata_contig17914:3846..40911691480844.4396307-CDS-H-paniculata_contig17914:3846..4091Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17914 3847..4091 -
1622929400.0081298-CDS-H-paniculata_contig17914:4440..45671622929400.0081298-CDS-H-paniculata_contig17914:4440..4567Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17914 4441..4567 -
1691480844.4497595-CDS-H-paniculata_contig17914:4440..45671691480844.4497595-CDS-H-paniculata_contig17914:4440..4567Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17914 4441..4567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17914.4305.1prot_H-paniculata_contig17914.4305.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17914 2965..4567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17914.4305.1

>prot_H-paniculata_contig17914.4305.1 ID=prot_H-paniculata_contig17914.4305.1|Name=mRNA_H-paniculata_contig17914.4305.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=199bp
DGEDNTVAESRWSCEPGLVGDYDYCMLFFDLGGSFTVSHLMLYVHDIDDD
TKAAIPFEVTVCSHDVDTCKYSNEYYFNSVQGSFATAPGTALGKGQRLNL
PRPEAYTIGILPTLITGQYIDISEVEIYLEVEGAEGTTTSTSAIDPASPT
PAPVSTSPSPISTTLAPVFTTPAPVSTSPAPISTTLAPVFTTPAPVSTS
back to top

mRNA from alignment at H-paniculata_contig17914:2964..4567-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17914.4305.1 ID=mRNA_H-paniculata_contig17914.4305.1|Name=mRNA_H-paniculata_contig17914.4305.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1604bp|location=Sequence derived from alignment at H-paniculata_contig17914:2964..4567- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGGCGAGGATAACACAGTGGCGGAGTCACGATGGTCTTGTGAACCCGG
ATTGGTGGGGGACTATGACTACTGCATGCTGTTCTTCGACTTGGGCGGTT
CCTTTACGGTATCCCACCTGATGCTTTGTGAGTTTCTCAGATATCAATCT
CGGGAGATTAGACTCAAGATACTATATGTAGGGCTGTAACTAAATATGTT
CTTTCGGGTGTATATCTCCGAGCTTGCTGACGGACGGATAGCTCCCTGAC
GAATGAGCAGCTTCCTCGTCCTGAAGATTAGGGAGATACAATGCAAGCAG
CGTGCTCAGCCCCCACCCTACCCCACCCCTCGCTCCCCTGCGCTTATTCA
TGGTTTCCGAACTAAAGTATAGCGTCAGCTTCCAAGGACCCCTTCCTTCC
GCTGCTCTCATGGTAAACCCCACCCCAATACATCACCTTCTTCCCTTCCC
TTTCCCAACCTTATGCTTCCTTACAGACGTCCATGACATAGACGACGACA
CAAAGGCTGCAATTCCGTTCGAGGTCACTGTTTGCTCGCACGACGTAGAC
ACGTGCAAATATTCGAACGAATATTATTTCAACTCGGTGCAGGGGAGTTT
CGCGACTGCGCCAGGGACAGCTCTCGGGAAGGGCCAGCGACTGAACCTCC
CGAGGCCCGAGGCGTATACCATAGGCATCCTTCCTACCCTCATAACGGGC
CAGTACATTGACATCAGCGAGGTGTGTGCTTGCGTGCTTGCACCTTTGAT
CCTCGCTTCTGGGAACTACTGTGGATGGATGTGCCGCTTACGAAGTGCAG
AAAAAGGGTAAAACGAAGAAGTGTGTAATAATCAGGTTGGAGGATAAAAT
AAATTGCAAAGGTCTTTACAGTACAAGTTTACCGCCCGTTCGCTGGTCTC
TCTTCATCATGCTTTGTAACTTGATTAAAAAAACGCGTCGGGTACTAGCT
CCCTATGCATGTACGTGCTTCCTGCTTCGTTCTTCCTTTCCTCCTCAGAA
ATTTGAATCATTTTAGCCAAGTTCAACATGTTATACTAAACGAAATCTAC
TATTATACTGAATATTTACTCGTACAATTAGCGTCTGTGACGATCTATGA
TACATTATACTTCCATCGGCCGGATCGATAACGCTCAATACTGTTCGAAA
TTCGACGGAAATTTCTGACTTTCGTCAGATATCAAATGGATTGTATTCAG
GGTCCGACTGATGGTCGAATGTCAATTTTGTCTAAGCTATTCTTGGTGGT
CCCTGCTGCGAAAAAAGAAGACAGTGAGCCGACACCATGACCACAACCCA
GAATAATACGTTGTACATCCCTAATAACGAACGCTTCCCCTGTGTCTTGT
GCTGCATTTCATACCCTCCTCCGATCAGGTGGAAATATACTTGGAAGTGG
AGGGAGCCGAGGGGACTACTACCTCCACAAGTGCCATTGACCCAGCTTCC
CCTACCCCTGCTCCCGTATCTACTAGCCCTTCCCCTATATCTACTACCCT
TGCCCCCGTATTCACTACCCCTGCCCCCGTATCTACGAGCCCTGCCCCTA
TATCTACTACCCTTGCCCCCGTATTCACTACCCCTGCCCCCGTATCTACG
AGCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig17914:2964..4567-

>mRNA_H-paniculata_contig17914.4305.1 ID=mRNA_H-paniculata_contig17914.4305.1|Name=mRNA_H-paniculata_contig17914.4305.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1194bp|location=Sequence derived from alignment at H-paniculata_contig17914:2964..4567- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGGCGAGGATAACACAGTGGCGGAGTCACGATGGTCTTGTGAACCCGG
ATTGGTGGGGGACTATGACTACTGCATGCTGTTCTTCGACTTGGGCGGTT
CCTTTACGGTATCCCACCTGATGCTTTGACGGCGAGGATAACACAGTGGC
GGAGTCACGATGGTCTTGTGAACCCGGATTGGTGGGGGACTATGACTACT
GCATGCTGTTCTTCGACTTGGGCGGTTCCTTTACGGTATCCCACCTGATG
CTTTACGTCCATGACATAGACGACGACACAAAGGCTGCAATTCCGTTCGA
GGTCACTGTTTGCTCGCACGACGTAGACACGTGCAAATATTCGAACGAAT
ATTATTTCAACTCGGTGCAGGGGAGTTTCGCGACTGCGCCAGGGACAGCT
CTCGGGAAGGGCCAGCGACTGAACCTCCCGAGGCCCGAGGCGTATACCAT
AGGCATCCTTCCTACCCTCATAACGGGCCAGTACATTGACATCAGCGAGA
CGTCCATGACATAGACGACGACACAAAGGCTGCAATTCCGTTCGAGGTCA
CTGTTTGCTCGCACGACGTAGACACGTGCAAATATTCGAACGAATATTAT
TTCAACTCGGTGCAGGGGAGTTTCGCGACTGCGCCAGGGACAGCTCTCGG
GAAGGGCCAGCGACTGAACCTCCCGAGGCCCGAGGCGTATACCATAGGCA
TCCTTCCTACCCTCATAACGGGCCAGTACATTGACATCAGCGAGGTGGAA
ATATACTTGGAAGTGGAGGGAGCCGAGGGGACTACTACCTCCACAAGTGC
CATTGACCCAGCTTCCCCTACCCCTGCTCCCGTATCTACTAGCCCTTCCC
CTATATCTACTACCCTTGCCCCCGTATTCACTACCCCTGCCCCCGTATCT
ACGAGCCCTGCCCCTATATCTACTACCCTTGCCCCCGTATTCACTACCCC
TGCCCCCGTATCTACGAGCGTGGAAATATACTTGGAAGTGGAGGGAGCCG
AGGGGACTACTACCTCCACAAGTGCCATTGACCCAGCTTCCCCTACCCCT
GCTCCCGTATCTACTAGCCCTTCCCCTATATCTACTACCCTTGCCCCCGT
ATTCACTACCCCTGCCCCCGTATCTACGAGCCCTGCCCCTATATCTACTA
CCCTTGCCCCCGTATTCACTACCCCTGCCCCCGTATCTACGAGC
back to top