mRNA_H-paniculata_contig17910.4304.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17910.4304.1
Unique NamemRNA_H-paniculata_contig17910.4304.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17910.4304.1 vs. uniprot
Match: D8LGM6_ECTSI (RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM6_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 5.620e-35
Identity = 62/76 (81.58%), Postives = 70/76 (92.11%), Query Frame = 1
Query:    1 ESLIVCRTAKATMVRSNLRMVIAIAKRYQHLGVPLTDLIQEGSMGLIRAVEKFDPERGFKLSTYSAWWIQQAVFKV 228
            ESL V   AK TMV +N+RMVI+IA++YQHLGVPLTDLIQEGS+GL+RAVEKFDPERGFKLSTYSAWWIQQA+FKV
Sbjct:   74 ESLKVGGAAKKTMVEANMRMVISIARKYQHLGVPLTDLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAIFKV 149          
BLAST of mRNA_H-paniculata_contig17910.4304.1 vs. uniprot
Match: A0A6H5LBV0_9PHAE (RNA_pol_sigma70 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBV0_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 6.800e-34
Identity = 63/77 (81.82%), Postives = 71/77 (92.21%), Query Frame = 1
Query:    1 ESLIVCRTAKATMVRSNLRMVIAIAKRYQHLGVPLTDLIQEGSMGLIRAVEKFDPERGFKLSTYSAWWIQQAVFKVI 231
            ESL VC  AK TMV +N+RMVI+IA++YQHLGVPLTDLIQEGS+GL+RAVEKFDPERGFKLSTYSAWWIQQA+FK I
Sbjct:  332 ESLKVCGAAKKTMVEANMRMVISIARKYQHLGVPLTDLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAIFKGI 408          
BLAST of mRNA_H-paniculata_contig17910.4304.1 vs. uniprot
Match: A0A835YXH6_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXH6_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.810e-28
Identity = 53/83 (63.86%), Postives = 66/83 (79.52%), Query Frame = 1
Query:   16 CRTAKATMVRSNLRMVIAIAKRYQHLGVPLTDLIQEGSMGLIRAVEKFDPERGFKLSTYSAWWIQQAVFKVIFFFCRHISLSI 264
            C  AK  MV SN+R+VIA+AKRY  +GVPL+DL+QEGS+GLIRA EK+DP +GFK STY+AWWIQQA+FK I +  R I L +
Sbjct:  142 CLHAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPAKGFKFSTYAAWWIQQAIFKAIAYHSRTIRLPV 224          
BLAST of mRNA_H-paniculata_contig17910.4304.1 vs. uniprot
Match: A0A835ZEC7_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC7_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.070e-27
Identity = 50/80 (62.50%), Postives = 66/80 (82.50%), Query Frame = 1
Query:   25 AKATMVRSNLRMVIAIAKRYQHLGVPLTDLIQEGSMGLIRAVEKFDPERGFKLSTYSAWWIQQAVFKVIFFFCRHISLSI 264
            AK  MV SN+R+VIA+AKRY  +GVPL+DL+QEGS+GLIRA EK+DP++GF+ STY+AWWIQQA++K I +  R I L +
Sbjct:  123 AKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKAIAYHSRTIRLPV 202          
BLAST of mRNA_H-paniculata_contig17910.4304.1 vs. uniprot
Match: A0A7S2AXT5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AXT5_9STRA)

HSP 1 Score: 112 bits (281), Expect = 4.000e-27
Identity = 55/80 (68.75%), Postives = 65/80 (81.25%), Query Frame = 1
Query:   19 RTAKATMVRSNLRMVIAIAKRYQHLGVPLTDLIQEGSMGLIRAVEKFDPERGFKLSTYSAWWIQQAVFKVIFFFCRHISL 258
            R AK  M+ SN+R+VI+IA+RYQHLGV L DLIQEGS+GLIRA EKFDP RGF+ STY++WWIQQAVF+ I F  R I L
Sbjct:  259 RHAKDVMINSNMRLVISIARRYQHLGVSLQDLIQEGSLGLIRASEKFDPSRGFRFSTYASWWIQQAVFRSIAFHSRIIRL 338          
BLAST of mRNA_H-paniculata_contig17910.4304.1 vs. uniprot
Match: A0A7S2Y444_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y444_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.140e-26
Identity = 48/80 (60.00%), Postives = 65/80 (81.25%), Query Frame = 1
Query:   25 AKATMVRSNLRMVIAIAKRYQHLGVPLTDLIQEGSMGLIRAVEKFDPERGFKLSTYSAWWIQQAVFKVIFFFCRHISLSI 264
            AK TMV+SN+R+V++IA++Y ++GV L DL+QEGS+GL RA EKFDP +GFK STY++WWIQQAVF+ I +  R I L +
Sbjct:    8 AKQTMVQSNMRLVVSIARKYMNVGVSLHDLVQEGSLGLSRAAEKFDPLKGFKFSTYASWWIQQAVFRSIAYQSRTIRLPV 87          
BLAST of mRNA_H-paniculata_contig17910.4304.1 vs. uniprot
Match: A0A7S2XUY2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUY2_9STRA)

HSP 1 Score: 108 bits (270), Expect = 4.340e-26
Identity = 49/73 (67.12%), Postives = 63/73 (86.30%), Query Frame = 1
Query:    1 ESLIVCRTAKATMVRSNLRMVIAIAKRYQHLGVPLTDLIQEGSMGLIRAVEKFDPERGFKLSTYSAWWIQQAV 219
            + LI+C  A++TMV  N+R+VI+IAK+YQ+LGV L DLIQEG+MGL+RA EKFDP+RGFK STY+AWWI+ AV
Sbjct:  158 DELILCHEARSTMVEHNMRLVISIAKKYQNLGVSLQDLIQEGAMGLVRATEKFDPKRGFKFSTYAAWWIRHAV 230          
BLAST of mRNA_H-paniculata_contig17910.4304.1 vs. uniprot
Match: A0A1Z5JZN1_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JZN1_FISSO)

HSP 1 Score: 109 bits (273), Expect = 4.740e-26
Identity = 51/88 (57.95%), Postives = 70/88 (79.55%), Query Frame = 1
Query:    1 ESLIVCRTAKATMVRSNLRMVIAIAKRYQHLGVPLTDLIQEGSMGLIRAVEKFDPERGFKLSTYSAWWIQQAVFKVIFFFCRHISLSI 264
            E ++ CR AK  MV+SN+R+V++IA++Y ++GV L DLIQEGS+GL RA EKFDP++GFK STY++WWIQQAVF+ I +  R I L +
Sbjct:  375 ELMMTCREAKQKMVQSNMRLVVSIARKYSNVGVGLQDLIQEGSLGLSRAAEKFDPKKGFKFSTYASWWIQQAVFRSIAYHSRTIRLPV 462          
BLAST of mRNA_H-paniculata_contig17910.4304.1 vs. uniprot
Match: A0A7S2WX55_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX55_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.480e-25
Identity = 49/71 (69.01%), Postives = 61/71 (85.92%), Query Frame = 1
Query:   19 RTAKATMVRSNLRMVIAIAKRYQHLGVPLTDLIQEGSMGLIRAVEKFDPERGFKLSTYSAWWIQQAVFKVI 231
            ++AK  M+ SNLR+VI+IAKRYQ  G+ LTDLIQEGS+GL+RAVEKFDPE+GFK STYS WWI+QA+ + I
Sbjct:  230 QSAKKAMISSNLRLVISIAKRYQKRGLALTDLIQEGSLGLVRAVEKFDPEKGFKFSTYSTWWIKQAILRAI 300          
BLAST of mRNA_H-paniculata_contig17910.4304.1 vs. uniprot
Match: A0A2G9YNV6_9BACT (RNA_pol_sigma70 domain-containing protein (Fragment) n=1 Tax=Candidatus Omnitrophica bacterium CG23_combo_of_CG06-09_8_20_14_all_40_11 TaxID=1974756 RepID=A0A2G9YNV6_9BACT)

HSP 1 Score: 103 bits (256), Expect = 1.610e-25
Identity = 43/70 (61.43%), Postives = 60/70 (85.71%), Query Frame = 1
Query:   25 AKATMVRSNLRMVIAIAKRYQHLGVPLTDLIQEGSMGLIRAVEKFDPERGFKLSTYSAWWIQQAVFKVIF 234
            A+ TM+R+NLR+VI IAKRY HLG P  DLI+EG++GL++AV+KFDP +GF+ STY+AWW++QA+ + IF
Sbjct:   36 ARKTMIRANLRLVINIAKRYMHLGTPFLDLIEEGNLGLMKAVDKFDPRKGFRFSTYAAWWVRQAITRAIF 105          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17910.4304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGM6_ECTSI5.620e-3581.58RNA polymerase, sigma 70 subunit, RpoD subfamily n... [more]
A0A6H5LBV0_9PHAE6.800e-3481.82RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
A0A835YXH6_9STRA1.810e-2863.86RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
A0A835ZEC7_9STRA2.070e-2762.50RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
A0A7S2AXT5_9STRA4.000e-2768.75Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2Y444_9STRA1.140e-2660.00Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S2XUY2_9STRA4.340e-2667.12Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1Z5JZN1_FISSO4.740e-2657.95Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S2WX55_9STRA1.480e-2569.01Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2G9YNV6_9BACT1.610e-2561.43RNA_pol_sigma70 domain-containing protein (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17910contigH-paniculata_contig17910:4696..4959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue6.3e-20
Seed eggNOG ortholog2850.Phatr9312
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Sigma-70 region 3
EggNOG OGs2QV7Q@2759,2XE8Y@2836,COG0568@1
Ec32 ortholog descriptionRNA polymerase sigma-70
Ec32 orthologEc-10_002800.1
COG Functional cat.K
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929399.9204066-CDS-H-paniculata_contig17910:4695..49591622929399.9204066-CDS-H-paniculata_contig17910:4695..4959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17910 4696..4959 +
1691480844.4156826-CDS-H-paniculata_contig17910:4695..49591691480844.4156826-CDS-H-paniculata_contig17910:4695..4959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17910 4696..4959 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17910.4304.1prot_H-paniculata_contig17910.4304.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17910 4696..4959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17910.4304.1

>prot_H-paniculata_contig17910.4304.1 ID=prot_H-paniculata_contig17910.4304.1|Name=mRNA_H-paniculata_contig17910.4304.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
ESLIVCRTAKATMVRSNLRMVIAIAKRYQHLGVPLTDLIQEGSMGLIRAV
EKFDPERGFKLSTYSAWWIQQAVFKVIFFFCRHISLSI
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mRNA from alignment at H-paniculata_contig17910:4696..4959+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17910.4304.1 ID=mRNA_H-paniculata_contig17910.4304.1|Name=mRNA_H-paniculata_contig17910.4304.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=264bp|location=Sequence derived from alignment at H-paniculata_contig17910:4696..4959+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAGTTTAATCGTATGCAGGACGGCGAAGGCCACGATGGTGCGGTCAAA CTTGCGCATGGTGATTGCCATCGCTAAGCGATACCAGCACCTGGGGGTGC CATTGACGGACCTGATTCAGGAAGGGTCGATGGGGTTGATACGGGCGGTG GAAAAGTTTGACCCTGAGCGAGGGTTCAAGCTGAGCACGTACTCGGCGTG GTGGATTCAGCAGGCCGTGTTCAAGGTGATTTTTTTTTTTTGCCGTCACA TTAGTCTTTCAATT
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Coding sequence (CDS) from alignment at H-paniculata_contig17910:4696..4959+

>mRNA_H-paniculata_contig17910.4304.1 ID=mRNA_H-paniculata_contig17910.4304.1|Name=mRNA_H-paniculata_contig17910.4304.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig17910:4696..4959+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAGTTTAATCGTATGCAGGACGGCGAAGGCCACGATGGTGCGGTCAAA
CTTGCGCATGGTGATTGCCATCGCTAAGCGATACCAGCACCTGGGGGTGC
CATTGACGGACCTGATTCAGGAAGGGTCGATGGGGTTGATACGGGCGGTG
GAAAAGTTTGACCCTGAGCGAGGGTTCAAGCTGAGCACGTACTCGGCGTG
GTGGATTCAGCAGGCCGTGTTCAAGGTGATTTTTTTTTTTTGCCGTCACA
TTAGTCTTTCAATTGAAAGTTTAATCGTATGCAGGACGGCGAAGGCCACG
ATGGTGCGGTCAAACTTGCGCATGGTGATTGCCATCGCTAAGCGATACCA
GCACCTGGGGGTGCCATTGACGGACCTGATTCAGGAAGGGTCGATGGGGT
TGATACGGGCGGTGGAAAAGTTTGACCCTGAGCGAGGGTTCAAGCTGAGC
ACGTACTCGGCGTGGTGGATTCAGCAGGCCGTGTTCAAGGTGATTTTTTT
TTTTTGCCGTCACATTAGTCTTTCAATT
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