mRNA_H-paniculata_contig1791.4303.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1791.4303.1 vs. uniprot
Match: A0A6H5JA82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA82_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 4.870e-14 Identity = 80/236 (33.90%), Postives = 107/236 (45.34%), Query Frame = 1
Query: 2707 DEAGEEGEGRIARSSGYGWCRPGTAEEMLDVLKESTDAWGRTILYFDD--------------GDANVPFQCEWDRREMEAVRRKRQLLAEKDAVLEAGLYGCSTSPPASRGGADPGGNGE-GRARNGSRNRGGGA-------------VPAVETLHVPSEPLWSAEWQVPDTVGPCQKVVRQLVNVNGIRADGLTLEELRETVLAMEEEVRSEEGPGSIPTAVSYFTTRAVISKEE 3330
D G G + AR +G C P +E+LD L E D GR ILYF+D G ++ Q EWD REM +R+ AE A E L+GC T + GA P G GRA + GGGA V A VP EP +WQ+ + +K+VRQL+ VNG+ AD LTL E +VL+ + ++EG + AVSY + +E
Sbjct: 863 DSGGAGGGEKGARVAGL--CNPRCLDELLDSLVEYRDDDGRPILYFNDNIASFKAAVGGREAGGGDIRLQDEWDEREMANLRQAGSRQAEAQAAAEIRLWGCETDAAGAPTGASPSSAGHVGRAATAT---GGGAXXXXXXXXXXXXGVDADNARFVPFEPACDEKWQLAMPMPAGRKMVRQLMFVNGVEADELTLAEA--SVLSEDALSLAQEGDTA---AVSYAVCHVSVPMDE 1088
BLAST of mRNA_H-paniculata_contig1791.4303.1 vs. uniprot
Match: D7FZC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZC5_ECTSI) HSP 1 Score: 84.7 bits (208), Expect = 1.130e-12 Identity = 76/226 (33.63%), Postives = 101/226 (44.69%), Query Frame = 1
Query: 2713 AGEEGEGRIARSSGYGWCRPGTAEEMLDVLKESTDAWGRTILYFDDG--------------DANVPFQCEWDRREMEAVRRKRQLLAEKDAVLEAGLYGCSTSPPASRGGADPGGNGE-GRARNGSRNRGG----------GAVPAVETLHVPSEPLWSAEWQVPDTVGPCQKVVRQLVNVNGIRADGLTLEELRETVLAMEEEVRSEEGPGSIPTAVSYFTTRAV 3315
+GE+G AR SG C P +E+LD L E D GR ILYF+D ++ Q EWD REM +R+ AE A E L+GC T + GA P G GRA + + V A VP EP WQ+ + +K+VRQL+ VNG+ AD LTL EL +VL+ + ++EG TA T A+
Sbjct: 837 SGEKG----ARVSGL--CNPRCLDELLDSLVEYRDDDGRPILYFNDNIDSFKAAVGGREAVSDDIRLQDEWDEREMANLRQAGSRQAETQAAAEIRLWGCETDAAGAPTGAAPSSAGHLGRAATATGSXXXXXXXXXXERVAGVDADNARFVPFEPACDENWQLAMPMPAGRKMVRQLMFVNGVEADELTLAELHASVLSEDALSLAQEGD----TAARKHTAEAL 1052
BLAST of mRNA_H-paniculata_contig1791.4303.1 vs. uniprot
Match: D7G8E0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8E0_ECTSI) HSP 1 Score: 73.9 bits (180), Expect = 2.440e-11 Identity = 53/154 (34.42%), Postives = 74/154 (48.05%), Query Frame = 1
Query: 2770 PGTAEEMLDVLKESTDAWGRTILYFDDGDANVPFQCEWDRREMEAVRRKRQLLAEKDAVLEAGLYGCSTSPPASRGGADPGGNGEGRARNGSRNR----GGGAVPAVETLHVPSEPLWSAEWQVPDTVGPCQKVVRQLVNVNGIRADGLTLEEL 3219
P +E+LD L E T+ GR +LY D + Q EWD+RE ++ R A+ E +GC T + R+G R++ G G + A ET P + + +WQV + Q+VVRQLV VNGI AD LTL E+
Sbjct: 9 PHDLKELLDSLVEHTEDDGRPVLYLKDDGEELQVQDEWDQREELQTQQARHRDADARTRAELEAWGCETDVTGAV------------IRSGGRSQDSAMGVGGIIACETRVAPFDLVSDEDWQVVSDLQADQRVVRQLVCVNGIEADELTLAEV 150 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1791.4303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1791.4303.1 >prot_H-paniculata_contig1791.4303.1 ID=prot_H-paniculata_contig1791.4303.1|Name=mRNA_H-paniculata_contig1791.4303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1261bp PWVELKVLRATGETSRSTDSSWSTGTEREWLTWRLLEQQRASVRSTTDLPback to top mRNA from alignment at H-paniculata_contig1791:7713..23394- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1791.4303.1 ID=mRNA_H-paniculata_contig1791.4303.1|Name=mRNA_H-paniculata_contig1791.4303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=15682bp|location=Sequence derived from alignment at H-paniculata_contig1791:7713..23394- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1791:7713..23394- >mRNA_H-paniculata_contig1791.4303.1 ID=mRNA_H-paniculata_contig1791.4303.1|Name=mRNA_H-paniculata_contig1791.4303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=7566bp|location=Sequence derived from alignment at H-paniculata_contig1791:7713..23394- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |