mRNA_H-paniculata_contig17902.4299.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17902.4299.1
Unique NamemRNA_H-paniculata_contig17902.4299.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17902.4299.1 vs. uniprot
Match: D8LQ75_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ75_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 3.450e-24
Identity = 54/72 (75.00%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:    1 MVFKAIKELKERNGSSLPAIKKYIVTTFPEVATKFAPHQLRAALKKGVEVGKFIKVKSSYKLSSEAKKPPPK 216
            MVF AIK LKERNGSS+ AIKK I  T+P  A  F PHQ+R+ALKKGVE GKFIKVKSSYKLS+EAKKP PK
Sbjct:    1 MVFDAIKSLKERNGSSIQAIKKSITATYP--ALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKPVPK 70
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BLAST of mRNA_H-paniculata_contig17902.4299.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 5.870e-23
Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:    1 MVFKAIKELKERNGSSLPAIKKYIVTTFPEVATKFAPHQLRAALKKGVEVGKFIKVKSSYKLSSEAKKPPPK 216
            MVF AIK LKERNGSS+ AIKK I  T+P +   F PHQ+R+ALKKGVE GKFIK+K+SYKLS+EAKKP PK
Sbjct:   11 MVFDAIKTLKERNGSSIQAIKKSITATYPTL--NFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 80
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BLAST of mRNA_H-paniculata_contig17902.4299.1 vs. uniprot
Match: A0A6H5JHR9_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR9_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.200e-22
Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    1 MVFKAIKELKERNGSSLPAIKKYIVTTFPEVATKFAPHQLRAALKKGVEVGKFIKVKSSYKLSSEAKKP 207
            MVF AIK LKER GSSLPA+KK I+ T+P +   F PHQ+R+ALKKG E GKFIKVKSSYKLS EAKKP
Sbjct:    1 MVFDAIKALKERGGSSLPALKKQIMATYPSL--NFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKP 67
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BLAST of mRNA_H-paniculata_contig17902.4299.1 vs. uniprot
Match: A0A6H5KST0_9PHAE (H15 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST0_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.310e-22
Identity = 50/72 (69.44%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:    1 MVFKAIKELKERNGSSLPAIKKYIVTTFPEVATKFAPHQLRAALKKGVEVGKFIKVKSSYKLSSEAKKPPPK 216
            MVF AIK LKERNGSS+ AIKK I  T+P +   F PHQ+R+ALKKGVE GKF+K+K+SYKLS+EAKKP PK
Sbjct:    1 MVFDAIKTLKERNGSSIQAIKKSITATYPTL--NFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKPAPK 70
[Close]
BLAST of mRNA_H-paniculata_contig17902.4299.1 vs. uniprot
Match: D7G4I5_ECTSI (H15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I5_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 2.910e-22
Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    1 MVFKAIKELKERNGSSLPAIKKYIVTTFPEVATKFAPHQLRAALKKGVEVGKFIKVKSSYKLSSEAKKP 207
            MVF AIK LKER GSSLPA+KK I+ T+P +   F PHQ+R+ALKKG E GKFIKVKSSYKLS EAKKP
Sbjct:   12 MVFDAIKALKERGGSSLPALKKQIMATYPSL--NFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKP 78
[Close]
BLAST of mRNA_H-paniculata_contig17902.4299.1 vs. uniprot
Match: A0A6H5KCU1_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.080e-20
Identity = 50/71 (70.42%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:    1 MVFKAIKELKERNGSSLPAIKKYIVTTFPEVATKFAPHQLRAALKKGVEVGKFIKVKSSYKLSSEAKKPPP 213
            MVF AIK LKERNGSS+ AIKK I  T+P +   F PHQ+R ALKKGVE GKFIK+K+SYKLS EAKKP P
Sbjct:  104 MVFDAIKTLKERNGSSIQAIKKSITATYPTL--NFTPHQMRGALKKGVESGKFIKMKASYKLSPEAKKPAP 172
[Close]
BLAST of mRNA_H-paniculata_contig17902.4299.1 vs. uniprot
Match: D8LMF1_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 2.870e-19
Identity = 46/66 (69.70%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:   13 AIKELKERNGSSLPAIKKYIVTTFPEVATKFAPHQLRAALKKGVEVGKFIKVKSSYKLSSEAKKPP 210
            AI  LKERNGSS+PAIKK+I  T+P +   F PHQLR ALKKG E G FIKVK+SYK+S EAKKPP
Sbjct:   11 AILALKERNGSSVPAIKKHIQATYPTL--NFLPHQLRGALKKGTETGTFIKVKASYKVSPEAKKPP 74
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BLAST of mRNA_H-paniculata_contig17902.4299.1 vs. uniprot
Match: A0A7S2Y1F8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1F8_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 8.810e-18
Identity = 48/72 (66.67%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:   13 AIKELKERNGSSLPAIKKYIVTTFPEVATKFAPHQLRAALKKGVEVGKFIKVKSSYKLSSEAKKPPPKKVVK 228
            AI  LK+R GSSLPAIK YI   +P V  KF PH LRAALKK VE GK IKVK+SYKLS++ KKP  KKV K
Sbjct:   11 AILALKDRTGSSLPAIKAYITANYPSV--KFLPHALRAALKKAVEAGKLIKVKASYKLSADEKKP--KKVAK 78
[Close]
BLAST of mRNA_H-paniculata_contig17902.4299.1 vs. uniprot
Match: A0A6H5K9S6_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S6_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.080e-15
Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    1 MVFKAIKELKERNGSSLPAIKKYIVTTFPEVATKFAPHQLRAALKKGVEVGKFIKVKSSYKLS 189
            MVF AIK LKERNGSS+ A+KK I  T+P  A  F PHQ+R+ALKKGVE GKFIKV+ +  L+
Sbjct:    1 MVFDAIKTLKERNGSSIQAMKKSITATYP--ALHFTPHQMRSALKKGVETGKFIKVRHALPLA 61
[Close]
BLAST of mRNA_H-paniculata_contig17902.4299.1 vs. uniprot
Match: D8LJB8_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB8_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 3.050e-14
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:    1 MVFKAIKELKERNGSSLPAIKKYIVTTFPEVATKFAPHQLRAALKKGVEVGKFIKVKSSYKLSSEAKKP 207
            M  +A+K LKERNGSSL AIKK+I  ++P +   F  H +R+ALKKGVE GKFIKVK+SYKLS+  ++P
Sbjct:    7 MTIEAVKALKERNGSSLFAIKKHITASYPSLT--FTAHFMRSALKKGVESGKFIKVKNSYKLSAYRQEP 73
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17902.4299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ75_ECTSI3.450e-2475.00H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQ80_ECTSI5.870e-2370.83Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JHR9_9PHAE1.200e-2272.46H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KST0_9PHAE1.310e-2269.44H15 domain-containing protein n=6 Tax=Ectocarpus T... [more]
D7G4I5_ECTSI2.910e-2272.46H15 domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5KCU1_9PHAE1.080e-2070.42H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMF1_ECTSI2.870e-1969.70H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2Y1F8_9STRA8.810e-1866.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6H5K9S6_9PHAE1.080e-1563.49H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJB8_ECTSI3.050e-1459.42H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17902contigH-paniculata_contig17902:2115..3258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue4e-18
Seed eggNOG ortholog2880.D7FWJ4
Preferred nameH1
KEGG koko:K11275
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
EggNOG free text desc.Domain in histone families 1 and 5
EggNOG OGs2CYYI@1,2S79K@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons3
Model size402
Cds size402
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17902.4299.1prot_H-paniculata_contig17902.4299.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17902 2115..3258 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929398.9466527-CDS-H-paniculata_contig17902:2114..21771622929398.9466527-CDS-H-paniculata_contig17902:2114..2177Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17902 2115..2177 -
1691480844.1097455-CDS-H-paniculata_contig17902:2114..21771691480844.1097455-CDS-H-paniculata_contig17902:2114..2177Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17902 2115..2177 -
1622929398.9608254-CDS-H-paniculata_contig17902:2333..25071622929398.9608254-CDS-H-paniculata_contig17902:2333..2507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17902 2334..2507 -
1691480844.1257505-CDS-H-paniculata_contig17902:2333..25071691480844.1257505-CDS-H-paniculata_contig17902:2333..2507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17902 2334..2507 -
1622929398.9709613-CDS-H-paniculata_contig17902:3093..32581622929398.9709613-CDS-H-paniculata_contig17902:3093..3258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17902 3094..3258 -
1691480844.136765-CDS-H-paniculata_contig17902:3093..32581691480844.136765-CDS-H-paniculata_contig17902:3093..3258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17902 3094..3258 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17902.4299.1

>prot_H-paniculata_contig17902.4299.1 ID=prot_H-paniculata_contig17902.4299.1|Name=mRNA_H-paniculata_contig17902.4299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
MVFKAIKELKERNGSSLPAIKKYIVTTFPEVATKFAPHQLRAALKKGVEV
GKFIKVKSSYKLSSEAKKPPPKKVVKTVVKKTVIKKTVTKKPAAKKTTPK
VKNPDDKSATPKKIVPKKKVIKKPADKKITPKKK
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mRNA from alignment at H-paniculata_contig17902:2115..3258-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17902.4299.1 ID=mRNA_H-paniculata_contig17902.4299.1|Name=mRNA_H-paniculata_contig17902.4299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1144bp|location=Sequence derived from alignment at H-paniculata_contig17902:2115..3258- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCTTCAAAGCAATCAAGGAGCTCAAGGAGCGCAACGGCTCCAGCCT
CCCAGCCATCAAAAAGTACATCGTTACCACCTTCCCTGAGGTCGCCACCA
AGTTCGCCCCCCACCAGCTTCGCGCTGCTCTCAAAAAAGGTGTCGAGGTC
GGGAAGTTTATCAAGGTATACACAGCTACTTGAATATTTAGCTTTTCCGT
GTTGTTACAGATGTGTGTCTGTCAAATACAGTCCTGTACAAGACAGAGCA
GCATGGTACAGTCAGTACAGGAGCTAGGGTACCAAATATTATCGCAATTC
TGGAGAGCAAAGCGGTCGAACGATGGATTTCCATCGACTGTTAGCAGAAT
ACCACATACAACGACTCCACTCAACACACAGCACAGAACAAGAATCCATT
AGGTCTATTTTGTTGCACTGCCACGGCCGAGATATAGGCGAAATCCATGA
GGAAATGGAAGATATGATCCTAACGCGATGGAACGTTCAGGATTAGTCGG
GCCCGTCCTCGCGTCTCTGACGCCCTTCAAACTAACGGCTACGTTTTCAA
CCATTGCTCAATGATCGTTTTCATTGTGCGCTGACGTTAAATACGATCCG
CACTATCGTTACTCGTTGTAGCTATGGCTGACTAGCTCTATTCTTGTCCG
CAAAACAAGAATATTATGTAGCACATTTGAAATGAAGGACAAAGGTTGCC
TGCAAGATCAGTAATACGCAACTTCATTAAATTTGCTTTCCATCTCAATA
GGTGAAGAGCTCGTACAAGCTCTCCTCCGAGGCTAAGAAGCCGCCGCCGA
AGAAGGTAGTGAAGACGGTGGTGAAGAAGACGGTCATCAAAAAGACCGTC
ACCAAGAAGCCCGCTGCCAAGAAGACTACCCCCAAGGTCAAGAATCCCGA
TGATAAGAGCGCTACTCCCAAGAAGGTCATCAACAAGCCCACCGACAAAA
ATATTATCCCCAAAATGAAGGTCAAAAAGTCCACCGACAAAACGATTACC
CCCAAGAAGGTCATCAACAAGTCCGCTGACAAAAAGATTACCCCCAAGAA
GAAGGTCATCAACAAGCTCGCTGACGAAAAGATTGTCCCCAAGAAGAAGG
TAATCAAAAAGCCCGCCGACAAAAAGATTACCCCCAAGAAGAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig17902:2115..3258-

>mRNA_H-paniculata_contig17902.4299.1 ID=mRNA_H-paniculata_contig17902.4299.1|Name=mRNA_H-paniculata_contig17902.4299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig17902:2115..3258- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCTTCAAAGCAATCAAGGAGCTCAAGGAGCGCAACGGCTCCAGCCT
CCCAGCCATCAAAAAGTACATCGTTACCACCTTCCCTGAGGTCGCCACCA
AGTTCGCCCCCCACCAGCTTCGCGCTGCTCTCAAAAAAGGTGTCGAGGTC
GGGAAGTTTATCAAGATGGTCTTCAAAGCAATCAAGGAGCTCAAGGAGCG
CAACGGCTCCAGCCTCCCAGCCATCAAAAAGTACATCGTTACCACCTTCC
CTGAGGTCGCCACCAAGTTCGCCCCCCACCAGCTTCGCGCTGCTCTCAAA
AAAGGTGTCGAGGTCGGGAAGTTTATCAAGGTGAAGAGCTCGTACAAGCT
CTCCTCCGAGGCTAAGAAGCCGCCGCCGAAGAAGGTAGTGAAGACGGTGG
TGAAGAAGACGGTCATCAAAAAGACCGTCACCAAGAAGCCCGCTGCCAAG
AAGACTACCCCCAAGGTCAAGAATCCCGATGATAAGAGCGCTACTCCCAA
GAAGGTGAAGAGCTCGTACAAGCTCTCCTCCGAGGCTAAGAAGCCGCCGC
CGAAGAAGGTAGTGAAGACGGTGGTGAAGAAGACGGTCATCAAAAAGACC
GTCACCAAGAAGCCCGCTGCCAAGAAGACTACCCCCAAGGTCAAGAATCC
CGATGATAAGAGCGCTACTCCCAAGAAGATTGTCCCCAAGAAGAAGGTAA
TCAAAAAGCCCGCCGACAAAAAGATTACCCCCAAGAAGAAAATTGTCCCC
AAGAAGAAGGTAATCAAAAAGCCCGCCGACAAAAAGATTACCCCCAAGAA
GAAA
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