prot_H-paniculata_contig17898.4297.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig17898.4297.1
Unique Nameprot_H-paniculata_contig17898.4297.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length221
Homology
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: A0A2P6UYX8_9CHLO (Retrotransposon Ty1-copia subclass n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYX8_9CHLO)

HSP 1 Score: 135 bits (340), Expect = 5.800e-34
Identity = 80/220 (36.36%), Postives = 115/220 (52.27%), Query Frame = 0
Query:    1 MEEELRALVKNGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLNAPVEEELFVKLLPEFSSFSRGIPCGRSGNSSEYRGMVGSLMYASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWAEDAEDTYSS 220
            M++E+ +L+ N TW    L   P        KW++K K    G++ RY+ARLV QGF   EG D+ E  APV++ ST+RTV S A   D ++   DI   +LN  ++EE++                        Y  +VGSLMY S  TR DI  AV   AR M +P  + ++  K++ RY++  P++GITFG  S G  L+ F DAD A D +   S+
Sbjct:   73 MDDEMASLIANDTWT---LCEPPHGTKPIPAKWVYKIKRDSNGNIERYKARLVVQGFRQREGIDYDEVFAPVSKYSTLRTVLSTAGRQDLDLHQLDIKTAFLNGTIDEEVYTH---------------------SYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPG--LQVFCDADHAGDIDTRRST 266          
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: A0A2P6V0L8_9CHLO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0L8_9CHLO)

HSP 1 Score: 135 bits (340), Expect = 6.880e-33
Identity = 80/220 (36.36%), Postives = 116/220 (52.73%), Query Frame = 0
Query:    1 MEEELRALVKNGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLNAPVEEELFVKLLPEFSSFSRGIPCGRSGNSSEYRGMVGSLMYASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWAEDAEDTYSS 220
            M++E+ +L+ N TW    L   P        KW++K K    G++ RY+ARLV QGF   EG D+ E  APV++ ST+RTV S AA  D ++   DI   +LN  ++EE++                        Y  +VGSLMY S  TR DI  AV   AR M +P  + ++  K++ RY++  P++GITFG  +   GL+ F DAD A D +   S+
Sbjct: 1759 MDDEMASLIANDTWT---LCEPPHGTKPIPAKWVYKIKRDSNGNIERYKARLVVQGFRQREGIDYDEVFAPVSKYSTLRTVLSTAAAQDLDLHQLDIKTAFLNGTIDEEVYTH---------------------SYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFG--AGPPGLQVFCDADHAGDIDTRRST 1952          
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: A0A699IK98_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699IK98_TANCI)

HSP 1 Score: 128 bits (322), Expect = 1.060e-32
Identity = 78/209 (37.32%), Postives = 113/209 (54.07%), Query Frame = 0
Query:   11 NGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLNAPVEEELFVKLLPEFSSFSRGIPCGRSGNSSEYRGMVGSLMYASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWAEDAEDTYS 219
            N TWE  DL   P    A   KWI KRK+K  GS+ +Y+ARLV QGF   E  DFF+T A VAR+ST+R + +LAA HD  I   D+   +LN  ++E++++K    F      +  G   +  EY   VG LMYA   TR +I +AV + +R   +P    +     +F+Y+    + G+T+ G  +   +EG+ DA W  + ED  S
Sbjct:    3 NDTWELTDL---PRGCKALGCKWILKRKMKVDGSIDKYKARLVIQGFRQKEEIDFFDTYALVARISTIRLLLALAAIHDLVIHQMDVKTAFLNGDLDEKIYMKQPEGF------VMLGHE-SKLEYSRAVGCLMYAMINTRPNITFAVRKLSRYNSNPSALHWQALGRVFQYLKGTVDYGLTYSGYPSV--IEGYSDASWINNMEDHSS 199          
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: A0A6L2NYR2_TANCI (Retrotransposon protein, putative, Ty1-copia subclass (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2NYR2_TANCI)

HSP 1 Score: 130 bits (327), Expect = 3.480e-31
Identity = 75/233 (32.19%), Postives = 125/233 (53.65%), Query Frame = 0
Query:    1 MEEELRALVKNGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLNAPVEEELFVK-----LLPE--------FSSFSRGIPCGRSGNSSEYRGMVGSLMYASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWAEDAEDTYSS 220
            +++E+ ++++N TW    L  LP+       KWIFK+K+K  G++ +++ARLV QGF   EG D+F+T APV+RM+T+R + +L A H+  I   D+   +LN  ++EE+++K     ++P           S       G+  +  EY   +G LMYA   T  DI YAV + +R   +P R+ +     +F+YI      G+++        L+G+ DA W    ED+ S+
Sbjct:  796 IDDEIGSIMENNTWV---LSNLPLGCKPLGCKWIFKKKMKVDGTINKFKARLVIQGFRQKEGIDYFDTYAPVSRMTTIRLLLALVATHNLVIHQMDVKIAFLNGDLDEEVYMKQPKRCVMPGDNHKVCKLVKSLKARPNTGKPVDQLEYSRTIGCLMYAMTNTGPDIAYAVGRLSRFTSNPSRQHWQAITRVFKYIKGTMSYGLSY--VEYPSVLKGYSDASWINHVEDSSST 1023          
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: UPI001246877E (uncharacterized protein LOC115967312 n=1 Tax=Quercus lobata TaxID=97700 RepID=UPI001246877E)

HSP 1 Score: 115 bits (289), Expect = 3.680e-28
Identity = 73/211 (34.60%), Postives = 112/211 (53.08%), Query Frame = 0
Query:   31 TKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLNAPVEEELFVK-----LLPEF----------------SSFSRGIPCGRSGNSSEYRGMVGSLMYASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWAEDAEDTYSS 220
            TKWIF+ K  E G+V   +ARLVAQG+S +EG D+ ET A VARM ++R + +LA +  F+    D+   +LN  ++E+++V+     + P F                 S  R    GR+ + S YR M+GSL+Y +A +R DI Y++   AR   +P     +  K I +Y+    E G+ +  K     L  + DADWA +A+D  S+
Sbjct:   28 TKWIFRNKTDEEGNVIWNKARLVAQGYSQMEGVDYDETFALVARMESIRILLALACQLKFKFYQMDVKTAFLNGFLKEDIYVEQPKGFIDPHFPDHVPQESTLWVKASPQSLIRQKDSGRNVDPSLYRSMIGSLLYLTA-SRPDISYSIGVCARYQANPKESHMTALKRIIKYVKTTAEFGVWYS-KDTSDVLARYSDADWAGNADDRKST 236          
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: Q10P45_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q10P45_ORYSJ)

HSP 1 Score: 119 bits (298), Expect = 2.640e-27
Identity = 74/232 (31.90%), Postives = 124/232 (53.45%), Query Frame = 0
Query:    4 ELRALVKNGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLNAPVEEELFV------KLLPEFSSF-SRGIPCGRSG------NSSEYRGMVGSL------MYASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWAEDAED 216
            E+ +++ NGTWE  +    P        KW+FK+KL+  G++ +Y+ARLVA+G++  EGEDFF+T +PVAR+ T+R + +LAA HD  +   D+   +LN  +EEE+++       ++ E   + S+       G      N    RG  G +      M+ SA TR DI +AV + +R + +P  + +   + + RY+       I + G      LEG+ D++W  DA++
Sbjct:  736 EMDSMMSNGTWEVVER---PYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLITIRVLLALAASHDLLVHQMDVKTAFLNGELEEEIYMDQPDSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGYEGGIHLCNPTMWTSA-TRPDISFAVSKMSRFVSNPGDDHWQALERVMRYLKGTMSYRIHYTGYPKV--LEGYSDSNWISDADE 961          
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: A0A2N9HB99_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HB99_FAGSY)

HSP 1 Score: 118 bits (296), Expect = 4.780e-27
Identity = 79/223 (35.43%), Postives = 124/223 (55.61%), Query Frame = 0
Query:    1 MEEELRALVKNGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLNAPVEEELFVKLLPE---FSSFSRGIPCGRSGNSSEYRGMVGSLMYASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWAEDAEDTYSS 220
            M+EEL AL+K GTW+  DL   P  ++A   KW++K K + GG+V RY+ARLVA+GF+   G D+ ET APVAR+S+VRT+ +++    + +   D+   + N  + EE++++L P     S   + +   +  +S     +V SL+Y +  TR DI YAVH   + M  P    ++    I  Y+      G+ F  +S+   L+ + DADWA D  D  S+
Sbjct:  648 MKEELDALLKTGTWDLVDL---PAGKSALGCKWVYKIKTRSGGTVDRYKARLVAKGFTQEYGIDYEETFAPVARISSVRTLIAVSVSRHWPLFQMDVKNAFFNGELIEEVYMQLPPASPFLSMVFQLVHMIQLCSSDAQIMLVESLVYLTV-TRPDISYAVHIVIQFMVAPRSLHYAVVLRILWYLKGTLFHGLHFSSQSS-LTLQAYSDADWAGDPTDRRST 865          
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: Q84T72_ORYSJ (Retrotransposon protein, putative, Ty1-copia sub-class n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q84T72_ORYSJ)

HSP 1 Score: 116 bits (291), Expect = 1.450e-26
Identity = 66/201 (32.84%), Postives = 113/201 (56.22%), Query Frame = 0
Query:   32 KWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDA-------TYLNAPVEEEL-----FVKLLPEFSSFSRGIPCGRSG----NSSEYRGMVGSLMYASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWAEDAED 216
            KW+FK+KL+  G++ +Y+ARLVA+G++  EGEDFF+T +PVAR++T+R + SLAA H   +   DI         T L +   E++     ++   P  + +   +   ++     N  EY  ++GSLMY ++ TR DI +AV + +R   +P  + +   + + RY+    ELG+ + G      LEG+ D++W  D ++
Sbjct:  296 KWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVYQMDIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIIRNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWHALERVMRYLKCTMELGLHYSGYPAV--LEGYSDSNWISDVDE 494          
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: UPI00098DC2EA (uncharacterized protein LOC109792370 n=1 Tax=Cajanus cajan TaxID=3821 RepID=UPI00098DC2EA)

HSP 1 Score: 110 bits (275), Expect = 7.560e-26
Identity = 72/225 (32.00%), Postives = 120/225 (53.33%), Query Frame = 0
Query:    1 MEEELRALVKNGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLNAPVEEELFVKLLPEFSSFSR---GIPCG-------RSG----NSSEYRGMVGSLMYASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWA 211
            M EE+ AL +N TW    L  LP  +TA   +W++K K +  GS+ RY+ARLVA+G++ +EG DF +T +PVA+++TVR + +LA  +++ ++  D++ T+L+  + EE  + +L + S         P         +SG    N + Y  ++G L+Y +  TR DI Y V   ++ ++ P          I RY+      G+ F   S+   ++ F D DWA
Sbjct:    1 MHEEIFALEENDTWV---LTALPHHKTAIGCRWVYKIKHRADGSIERYKARLVAKGYTQMEGLDFIDTYSPVAKLTTVRLILALATMNNWHLKQLDVNNTFLHGILHEEYALDILTDTSLLGAKPVSTPIDYCTKLHKKSGTILPNPTPYHRLIGRLIYLT-NTRPDISYCVQHLSQFVDSPTSAHQQEAFHIVRYLKNALGCGLFFSNNSHPQ-IKAFSDFDWA 220          
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: A0A699H8F3_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699H8F3_TANCI)

HSP 1 Score: 114 bits (286), Expect = 1.020e-25
Identity = 73/222 (32.88%), Postives = 117/222 (52.70%), Query Frame = 0
Query:    3 EELRALVKNGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLN--APVEEEL--FVKLLPEFSSFSRGIPCGRSGNSSEYRGMVGSLMYASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWAEDAEDTYSS 220
            +E+ ++++N TW   DL  LP        KWIFKRK+K  G++ +++ RLV QGF   +G D+F+T APVAR++ +R + +LAA H+  I   ++  T LN  +P+   +    KL P           G+     EY  ++G LMY    TR DI Y V + +R   +P R+       +F+Y+    + G++  G  +   LEG+ +A W    ED+ S+
Sbjct:  570 DEISSIMENNTW---DLSDLPPGCKPLGCKWIFKRKMKVDGTIDKFKVRLVIQGFRQNKGIDYFDTYAPVARITIIRLLLALAAIHNLVIYQMNVKTTLLNDCSPMSTPMDPIEKLKPN---------TGKHVEQLEYS-IIGCLMYVMTSTRPDIAYVVGRLSRFTSNPSRQHCKAITRVFKYLRGTKDYGLSHVGYPSV--LEGYSNASWINHVEDSTST 776          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P6UYX8_9CHLO5.800e-3436.36Retrotransposon Ty1-copia subclass n=1 Tax=Micract... [more]
A0A2P6V0L8_9CHLO6.880e-3336.36Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A699IK98_TANCI1.060e-3237.32Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerarii... [more]
A0A6L2NYR2_TANCI3.480e-3132.19Retrotransposon protein, putative, Ty1-copia subcl... [more]
UPI001246877E3.680e-2834.60uncharacterized protein LOC115967312 n=1 Tax=Querc... [more]
Q10P45_ORYSJ2.640e-2731.90Retrotransposon protein, putative, Ty1-copia subcl... [more]
A0A2N9HB99_FAGSY4.780e-2735.43Integrase catalytic domain-containing protein n=1 ... [more]
Q84T72_ORYSJ1.450e-2632.84Retrotransposon protein, putative, Ty1-copia sub-c... [more]
UPI00098DC2EA7.560e-2632.00uncharacterized protein LOC109792370 n=1 Tax=Cajan... [more]
A0A699H8F3_TANCI1.020e-2532.88Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerarii... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 20..118
e-value: 9.2E-22
score: 77.9
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 1..121
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..121

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17898contigH-paniculata_contig17898:3009..4180 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17898.4297.1mRNA_H-paniculata_contig17898.4297.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig17898 2994..4180 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig17898.4297.1 ID=prot_H-paniculata_contig17898.4297.1|Name=mRNA_H-paniculata_contig17898.4297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=221bp
MEEELRALVKNGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEA
RLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDAT
YLNAPVEEELFVKLLPEFSSFSRGIPCGRSGNSSEYRGMVGSLMYASAGT
RSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGH
GLEGFVDADWAEDAEDTYSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like