mRNA_H-paniculata_contig17891.4296.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17891.4296.1
Unique NamemRNA_H-paniculata_contig17891.4296.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17891.4296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17891contigH-paniculata_contig17891:475..2768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size343
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929398.6441984-CDS-H-paniculata_contig17891:474..5151622929398.6441984-CDS-H-paniculata_contig17891:474..515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17891 475..515 +
1691480843.955981-CDS-H-paniculata_contig17891:474..5151691480843.955981-CDS-H-paniculata_contig17891:474..515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17891 475..515 +
1622929398.6597855-CDS-H-paniculata_contig17891:2468..27661622929398.6597855-CDS-H-paniculata_contig17891:2468..2766Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17891 2469..2766 +
1691480843.964726-CDS-H-paniculata_contig17891:2468..27661691480843.964726-CDS-H-paniculata_contig17891:2468..2766Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17891 2469..2766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17891.4296.1prot_H-paniculata_contig17891.4296.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17891 475..2766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17891.4296.1

>prot_H-paniculata_contig17891.4296.1 ID=prot_H-paniculata_contig17891.4296.1|Name=mRNA_H-paniculata_contig17891.4296.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
QEKQPDSLQVVSWRYLKLRHLLYASKMKMEKPELVSCLPKRCHYLISGIY
RFYLAHLSGTLVQGVFFLSCFCINAVRSVYSPHLHALLIVVTVAGVFFSV
FGANCFVLYIMFP
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mRNA from alignment at H-paniculata_contig17891:475..2768+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17891.4296.1 ID=mRNA_H-paniculata_contig17891.4296.1|Name=mRNA_H-paniculata_contig17891.4296.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2294bp|location=Sequence derived from alignment at H-paniculata_contig17891:475..2768+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAGAAACAACCTGACTCTCTGCAAGTTGTCTCATGGAGGTCTGTCTG
AGTTCTAGTTCGTTTTTGATTGACGTTGTGTTTTCTCGTGTGCAATTATT
ATCATCGCTATGTTTCAGTAGAGCAACATTTGCACATGCGGTCCGCGAAT
TTTCGGTCGTACTCCATTGACGCAACGCAATGGCTCGCTTGAGCATGTTG
TCCCTTAAGAATCGTTTGTAGAAATAAAATGGAGTTTAGAGCGGAAATGG
TGCTTCCGAATGACAGGGACATTGTTGGATTAACAAGGGTCGAGGTCATT
TCTGTGTGGGCCAGTTTCGTGTCTTGCAACGGGGTTTTGAATCTTTTCTG
GCCAATCAAAACGTGAAGAAGCTATTTTAGCATTATACCTCCAATGTAAG
CCACAAGAGATGACCGACCAATGAACGACCTCCTTAAAGCAAGCCACCTA
CATGAATCAACCACCATCGTGTACAACGCAAGCCATCGGCACAACTCTGG
AGAGCGAAAGATCTGTCACAACAGTAACCACGTAGCTGTATCTTGCGTAT
CTCCACAGGTGGGTACAGCGTGCGGGAGCAATGCGATTGATAGAGCAAGG
AAACAGAGCTCGATGTAGAGCCCAATTCAAGGGGCGCTGTCATACGGACA
ATTGTGCGGGCACCATCAGCGCCTAGGAGATTCCGCATCTCGTTCAGTTT
CGATTGAAAAGCAGCCAAACGTCCGCCCGATACACAAGTTAATTAGCAGG
AATTCATGCAAATAGCTGTGTCTGTATAACCGGCGTTTTGCGGGGATCGG
AAATCGGGACTTAGTACTTGGTACCTAGTCGTGGGCTTAAGCTCCTCCCC
TCACAGCGCTTCCGAGTTGTGTTAACAGTGGTTGCACACTCTGGGGTGGA
AAGGAAAATAGCTGTGTCGACACTACAGCCCAGCGGCCGGCCTTGATGAG
TGGCCTACAACGTAGTCAACCCTAACGTTCCGACATTCCGTTGCAAGCTA
GTGATCTGAAGCTCCGCTATAATCGGTCGTATCATGACAATGAAACGGGA
TTGTCCACTCTGTTTGATTCATTTTACCGCATTAGACTTGACTGGATTGC
TGCGGCGTGATGAGAGAAACACATAGTATTGCTCTGTGTGCAGCAGCAGC
ACGAGGTGCATAACGTGGGCCTAATCGGAAGATTTCTACCTGGCTTTACT
CAGTCCTGTGTCGCGCTCAGTTTTGTACCATGGTGGTGGATGTTTTGAGT
GAGATCCTGTTTAGCTTGTTTATCTCTACGAGACGCCAAATCCAAATACA
CCAGCACCTGGCATGGAGAAACACGTTCGGTCTCCTTTTTCATTGCCTTA
GTGGGTTCTCACAACAAGTCGAGCTTGGGGCAAATGCCGTGAGAAAACGC
TTTCGATCTTGGCCACAAACGTAGACAGAGGGAGTCTCTAGTGCGAATAC
TGTTTTTTGAAATGAGGGTGTTGACCGGGTTCGTGTGTCCACCCACGCGC
TAAATGTCATCCAATGGCGAGCCACGAAAATGCACGTACAAGCTGTCGGG
TTCTCTATGAAGTGGACTCGTCACGAATGATTAGGCTGGGGCTCTAAAGT
GTGGGAGAACGCGCTTCGGTCATGCCCATGGACATGGTTGTTGGTGGCAT
ATAGCTGGATAAAGCGCTCTTTAAATTTCGGACTTCGACCTCTCTAGTTT
GTCTCAGCAGAATCGCCTGCGGCGTGCGGGTCGGAGAAGGGGGGGGGGTA
ATGAAATGAATTAAAAAACTTGGCCCACTACTTCCAAAATTTGCCAAGAG
AGTTTGTTTGTTAGTTGTTTATCGGTTTCTGGTTCACATAAGTATTCTTG
ACTATTTTCATGTGTCTTTTTCGTCGTTTGTTTGGTTTTACCGTTTGTAT
GGCGAGCCGTTTGCGCCGTGAATTTGTCTCGGGTGGTTTCGTGTCTTGTT
TTTTTACTCGTTTTTTTACTCGTTTTTTTACTCGTTTTTTGTAGATATTT
GAAGTTACGCCACCTGCTTTACGCCTCAAAAATGAAGATGGAAAAACCGG
AACTTGTAAGTTGCCTTCCGAAGCGCTGTCATTATCTAATTAGTGGTATT
TACCGTTTTTATCTAGCTCACTTATCAGGGACTCTCGTTCAAGGTGTTTT
TTTTTTATCGTGTTTTTGTATAAATGCAGTGCGTAGTGTATATTCCCCGC
ATCTGCATGCTCTCTTGATTGTTGTCACAGTTGCGGGTGTCTTTTTTTCT
GTATTTGGCGCAAATTGTTTTGTTCTATATATTATGTTCCCTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig17891:475..2768+

>mRNA_H-paniculata_contig17891.4296.1 ID=mRNA_H-paniculata_contig17891.4296.1|Name=mRNA_H-paniculata_contig17891.4296.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig17891:475..2768+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAGAAACAACCTGACTCTCTGCAAGTTGTCTCATGGAGCAGGAGAAA
CAACCTGACTCTCTGCAAGTTGTCTCATGGAGATATTTGAAGTTACGCCA
CCTGCTTTACGCCTCAAAAATGAAGATGGAAAAACCGGAACTTGTAAGTT
GCCTTCCGAAGCGCTGTCATTATCTAATTAGTGGTATTTACCGTTTTTAT
CTAGCTCACTTATCAGGGACTCTCGTTCAAGGTGTTTTTTTTTTATCGTG
TTTTTGTATAAATGCAGTGCGTAGTGTATATTCCCCGCATCTGCATGCTC
TCTTGATTGTTGTCACAGTTGCGGGTGTCTTTTTTTCTGTATTTGGCGCA
AATTGTTTTGTTCTATATATTATGTTCCCTATATTTGAAGTTACGCCACC
TGCTTTACGCCTCAAAAATGAAGATGGAAAAACCGGAACTTGTAAGTTGC
CTTCCGAAGCGCTGTCATTATCTAATTAGTGGTATTTACCGTTTTTATCT
AGCTCACTTATCAGGGACTCTCGTTCAAGGTGTTTTTTTTTTATCGTGTT
TTTGTATAAATGCAGTGCGTAGTGTATATTCCCCGCATCTGCATGCTCTC
TTGATTGTTGTCACAGTTGCGGGTGTCTTTTTTTCTGTATTTGGCGCAAA
TTGTTTTGTTCTATATATTATGTTCCCT
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