mRNA_H-paniculata_contig1789.4290.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1789.4290.1
Unique NamemRNA_H-paniculata_contig1789.4290.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1789.4290.1 vs. uniprot
Match: D8LRT2_ECTSI (ATPgrasp_ST domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LRT2_ECTSI)

HSP 1 Score: 263 bits (671), Expect = 1.880e-84
Identity = 121/154 (78.57%), Postives = 135/154 (87.66%), Query Frame = 1
Query:    1 VEVLSCVFRAGRQGADTDHSSILFDVDTKTGTILKGTTNAHWYQLGPEKILSTPWVSTHDTTHHPDNNKLVSGATIPDLDSKLALVADAHFKLMPDVPLVGWDVALTTKGVYLLEVNLSCNFFRGSFDVPHYVQFVNDYFIALEDERATRVKIE 462
            V+ LSCVFRAGRQ ADTDHSSILFDVD  TGT+LKGTTNAHWY+LGP K+ +TPWVSTHD THHPDNNKL++G  IPD+  KL LVADAHFKL+PDVPLVGWDVALTTKGVYLLEVNLSCNFFRGSF +  YV+FV+DYF+ALE+ER    KIE
Sbjct:  268 VDSLSCVFRAGRQDADTDHSSILFDVDASTGTLLKGTTNAHWYELGPTKMFNTPWVSTHDVTHHPDNNKLITGEVIPDIQGKLDLVADAHFKLLPDVPLVGWDVALTTKGVYLLEVNLSCNFFRGSFSLGLYVKFVHDYFVALEEERGAHGKIE 421          
BLAST of mRNA_H-paniculata_contig1789.4290.1 vs. uniprot
Match: A0A835YXM0_9STRA (Sugar-transfer associated ATP-grasp-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXM0_9STRA)

HSP 1 Score: 221 bits (563), Expect = 2.480e-68
Identity = 100/150 (66.67%), Postives = 123/150 (82.00%), Query Frame = 1
Query:    1 VEVLSCVFRAGRQGADTDHSSILFDVDTKTGTILKGTTNAHWYQLGPEKILSTPWVSTHDTTHHPDNNKLVSGATIPDLDSKLALVADAHFKLMPDVPLVGWDVALTTKGVYLLEVNLSCNFFRGSFDVPHYVQFVNDYFIALEDERATR 450
            ++ LS VFRAG  GA TDHSSILFDVD+KTGTI KGTTN HWY+LGP+ +++ PW+STHDTTHHPDN++ V+GA IPD+ S LA+V D+H KL+PDVP+VGWDVA+T KGV LLEVNLSCNFFRGSFDV  Y+  V++Y+  LE  R  +
Sbjct:  254 IKALSSVFRAGMAGASTDHSSILFDVDSKTGTIGKGTTNNHWYKLGPQSVMTCPWLSTHDTTHHPDNHQQVTGAVIPDMKSVLAMVVDSHNKLLPDVPMVGWDVAMTNKGVVLLEVNLSCNFFRGSFDVASYISMVDEYWTQLEKLRILK 403          
BLAST of mRNA_H-paniculata_contig1789.4290.1 vs. uniprot
Match: A0A6B2L540_9EUKA (ATPgrasp_ST domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L540_9EUKA)

HSP 1 Score: 209 bits (531), Expect = 1.700e-63
Identity = 99/144 (68.75%), Postives = 112/144 (77.78%), Query Frame = 1
Query:    1 VEVLSCVFRAGRQGADTDHSSILFDVDTKTGTILKGTTNAHWYQLGPEKILSTPWVSTHDTTHHPDNNKLVSGATIPDLDSKLALVADAHFKLMPDVPLVGWDVALTTKGVYLLEVNLSCNFFRGSFDVPHYVQFVNDYFIALE 432
            V  LSCVFRAGR GA TDHSSILFDVD +TGT+LKGTTNAHWYQLGP K  STPW S+H  THHPD    ++G TIPD+     LV +AH +L+PDVPL GWDVALTTKG  LLEVNLSCNFFRG+FDVP YV  ++ YF  L+
Sbjct:  254 VRSLSCVFRAGRAGAATDHSSILFDVDLQTGTLLKGTTNAHWYQLGPTKAFSTPWTSSHTLTHHPDCGVKITGETIPDIIKIRQLVEEAHKELIPDVPLAGWDVALTTKGTLLLEVNLSCNFFRGTFDVPGYVVMLDAYFSKLD 397          
BLAST of mRNA_H-paniculata_contig1789.4290.1 vs. uniprot
Match: A0A5A8EKU8_CAFRO (ATPgrasp_ST domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EKU8_CAFRO)

HSP 1 Score: 191 bits (484), Expect = 3.740e-55
Identity = 94/155 (60.65%), Postives = 111/155 (71.61%), Query Frame = 1
Query:    1 VEVLSCVFRAGRQGADTDHSSILFDVDTKTGTILKGTTNAHWYQLGPEKILSTPWVSTHDTTHHPDNNKLVSGATIPDLDSKLALVADAHFKLMPDVPLVGWDVALTTK-GVYLLEVNLSCNFFRGSFDVPHYVQFVNDYFIALEDERATRVKIE 462
            ++ LSC FRAGR GA TDHSSI FDV+ +TG + +GTT+AHWYQLG  K LSTPW S HD THHPD  K ++G TIPD+     LV DAH +L+P VPLVGWDVALT + GV LLEVNLSCNFFR  FD   Y + V  YF+ LE     RV++E
Sbjct:  373 IQALSCAFRAGRAGAVTDHSSIQFDVNVETGEVRRGTTSAHWYQLGLAKALSTPWTSEHDVTHHPDCGKPIAGVTIPDMAGIRKLVCDAHRRLLPRVPLVGWDVALTARHGVVLLEVNLSCNFFRARFDKTRYFRLVEQYFLDLE-----RVQLE 522          
BLAST of mRNA_H-paniculata_contig1789.4290.1 vs. uniprot
Match: A0A7S2JUM4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JUM4_9STRA)

HSP 1 Score: 182 bits (463), Expect = 4.890e-55
Identity = 92/155 (59.35%), Postives = 108/155 (69.68%), Query Frame = 1
Query:    1 VEVLSCVFRAGRQGADTDHSSILFDVDTKTGTILKGTTNAHWYQLGPEKILS--TPWVSTHDTTHHPDNNKLVSGATIPDLDSKLALVADAHFKLMPDVPLVGWDVALTTKG---VYLLEVNLSCNFFRGSFDVPHYVQFVNDYFIALEDERATR 450
            ++ LSCVFRAGR GA TDH SILFD+D KTG +LKGTTNAHWY+LG  + L    PW STH  THHPD + LV G  +PD  + L LV  +H KL PDVPLVGWDV L+      V LLEVNLSCNFFRGSFD   Y+ F++D F AL  +  +R
Sbjct:  100 IDALSCVFRAGRAGAATDHDSILFDIDPKTGILLKGTTNAHWYRLGLHEALPGMCPWRSTHHATHHPDGDILVEGNQVPDFKNILTLVETSHMKLCPDVPLVGWDVVLSADKSLPVCLLEVNLSCNFFRGSFDKGLYLDFMDDSFRALHRKMISR 254          
BLAST of mRNA_H-paniculata_contig1789.4290.1 vs. uniprot
Match: A0A7S0GAG1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GAG1_9STRA)

HSP 1 Score: 177 bits (448), Expect = 3.320e-53
Identity = 90/153 (58.82%), Postives = 103/153 (67.32%), Query Frame = 1
Query:    1 VEVLSCVFRAGRQGADTDHSSILFDVDTKTGTILKGTTNAHWYQLGPEKIL--STPWVSTHDTTHHPDNNKLVSGATIPDLDSKLALVADAHFKLMPDVPLVGWDVALTTKG---VYLLEVNLSCNFFRGSFDVPHYVQFVNDYFIALEDERA 444
            ++ LSCVFRAGR+GA TDH SILFD+D  TG I  GTTNAHWY+LGP +IL    PW STH TTHHPD N  V+G T+P++   L LV   H  L PDVPLVGWDV L+      + LLEVNLSCNFFRGSFD   Y+ FV   F  L   R 
Sbjct:   66 IKALSCVFRAGREGAATDHDSILFDIDPATGVIGGGTTNAHWYRLGPHEILPGKCPWRSTHGTTHHPDGNIPVTGNTLPNIKGILELVEKGHLDLCPDVPLVGWDVVLSADSEVPICLLEVNLSCNFFRGSFDWGVYLDFVEKSFEKLHPLRV 218          
BLAST of mRNA_H-paniculata_contig1789.4290.1 vs. uniprot
Match: A0A7S4MEK1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MEK1_9STRA)

HSP 1 Score: 180 bits (456), Expect = 6.190e-52
Identity = 89/154 (57.79%), Postives = 108/154 (70.13%), Query Frame = 1
Query:    1 VEVLSCVFRAGRQGADTDHSSILFDVDTKTGTILKGTTNAHWYQLGPEKILS--TPWVSTHDTTHHPDNNKLVSGATIPDLDSKLALVADAHFKLMPDVPLVGWDVALTTKG---VYLLEVNLSCNFFRGSFDVPHYVQFVNDYFIALEDERAT 447
            +  LSCVFRAGR+GA TDH SILFDVD KTG IL GTTNAHWY+LG  + L    PW S H  THHPD +  V+G ++PD+   L LV ++H KL PDVP VGWDV L+      V LLEVNLSCNFFRGSFD   Y++F++D  + L+ +R T
Sbjct:  283 ITALSCVFRAGRKGASTDHDSILFDVDVKTGKILGGTTNAHWYRLGLHESLPGRCPWRSKHGYTHHPDGDIEVTGKSVPDIRGMLDLVEESHLKLCPDVPFVGWDVVLSADEKLPVCLLEVNLSCNFFRGSFDKKVYLEFIDDALVKLQAQRLT 436          
BLAST of mRNA_H-paniculata_contig1789.4290.1 vs. uniprot
Match: W7TJS0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJS0_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.910e-51
Identity = 87/145 (60.00%), Postives = 104/145 (71.72%), Query Frame = 1
Query:    1 VEVLSCVFRAGRQGADTDHSSILFDVDTKTGTILKGTTNAHWYQLGPEKILSTPWVSTHDTTHHPDNN-KLVSGATIPDLDSKLALVADAHFKLMPDVPLVGWDVALTTKGVYLLEVNLSCNFFRGSFDVPHYVQFVNDYFIALE 432
            ++ LSCVFRAGR GA TDH+SILFDVD +TG + +G+TNAHWYQLG   I  TPW S + T  HPD   + ++G  IPD+     LV  AHF ++PDVPLVGWDVALTTKG+ LLEVNLSCNFFRG+F    Y QF  DY   L+
Sbjct:  276 IQALSCVFRAGRAGAATDHASILFDVDAETGRVREGSTNAHWYQLGLRSIPRTPWRSRYRTAAHPDAPARPLTGLQIPDMGGIRRLVRRAHFLMLPDVPLVGWDVALTTKGLVLLEVNLSCNFFRGTFQKGPYFQFCRDYLDVLQ 420          
BLAST of mRNA_H-paniculata_contig1789.4290.1 vs. uniprot
Match: A0A2D4C686_PYTIN (ATPgrasp_ST domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C686_PYTIN)

HSP 1 Score: 176 bits (446), Expect = 2.260e-51
Identity = 85/152 (55.92%), Postives = 104/152 (68.42%), Query Frame = 1
Query:    1 VEVLSCVFRAGRQGADTDHSSILFDVDTKTGTILKGTTNAHWYQLGPEKILSTPWVSTHDTTHHPDNNKLVSGATIPDLDSKLALVADAHFKLMPDVPLVGWDVALTTKGVYLLEVNLSCNFFRGSFDVPHYVQFVNDYFIALEDERATRVK 456
            V+ LSCVFRAG  GA TDH SI+FDVD +TG ILKG+T  HWY++GP  +L       HD T+HPD    ++G  I ++     LV +AHFKLM DVPL GWDVALT KGV LLEVN+SCNFFRG+ D P Y +F+++YF  LE   A   K
Sbjct:  200 VKSLSCVFRAGLAGAATDHKSIMFDVDMETGKILKGSTTTHWYRIGPHHVLRGKMSVGHDITNHPDTGVPITGNVIKEIKQMKKLVEEAHFKLMKDVPLCGWDVALTNKGVLLLEVNISCNFFRGTXDQPWYFRFLDEYFRHLEKVPAPNKK 351          
BLAST of mRNA_H-paniculata_contig1789.4290.1 vs. uniprot
Match: A0A6U3XN04_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3XN04_9STRA)

HSP 1 Score: 178 bits (451), Expect = 3.270e-51
Identity = 90/154 (58.44%), Postives = 103/154 (66.88%), Query Frame = 1
Query:    1 VEVLSCVFRAGRQGADTDHSSILFDVDTKTGTILKGTTNAHWYQLGPEKILS--TPWVSTHDTTHHPDNNKLVSGATIPDLDSKLALVADAHFKLMPDVPLVGWDVALTTKG---VYLLEVNLSCNFFRGSFDVPHYVQFVNDYFIALEDERAT 447
            V  LSCVFRAGR+GA TDH SILFDVD  TG I  GTTNAHWY+LG  + L    PW STH  THHPD N  V G  +PD+   L LV  +H KL PDVP VGWDV LT      + LLEVNLSCNFFRGSFD   Y+ F++D  + L+ +R T
Sbjct:  283 VTALSCVFRAGREGASTDHDSILFDVDVNTGVIQGGTTNAHWYRLGLFETLPGRCPWRSTHGYTHHPDGNIPVKGQQLPDIRGMLELVEKSHLKLCPDVPFVGWDVVLTNDPKIPICLLEVNLSCNFFRGSFDKKVYLDFLDDMLVRLQAQRLT 436          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1789.4290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRT2_ECTSI1.880e-8478.57ATPgrasp_ST domain-containing protein n=3 Tax=Ecto... [more]
A0A835YXM0_9STRA2.480e-6866.67Sugar-transfer associated ATP-grasp-domain-contain... [more]
A0A6B2L540_9EUKA1.700e-6368.75ATPgrasp_ST domain-containing protein n=1 Tax=Arce... [more]
A0A5A8EKU8_CAFRO3.740e-5560.65ATPgrasp_ST domain-containing protein n=3 Tax=Cafe... [more]
A0A7S2JUM4_9STRA4.890e-5559.35Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S0GAG1_9STRA3.320e-5358.82Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S4MEK1_9STRA6.190e-5257.79Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
W7TJS0_9STRA1.910e-5160.00Uncharacterized protein (Fragment) n=2 Tax=Monodop... [more]
A0A2D4C686_PYTIN2.260e-5155.92ATPgrasp_ST domain-containing protein n=1 Tax=Pyth... [more]
A0A6U3XN04_9STRA3.270e-5158.44Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1789contigH-paniculata_contig1789:2345..2947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score265.4
Seed ortholog evalue1.7e-68
Seed eggNOG ortholog2880.D8LRT2
Hectar predicted targeting categoryother localisation
EggNOG OGs293NF@1,2RAJ8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size465
Cds size465
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929395.766958-CDS-H-paniculata_contig1789:2344..25501622929395.766958-CDS-H-paniculata_contig1789:2344..2550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1789 2345..2550 +
1691480843.5177689-CDS-H-paniculata_contig1789:2344..25501691480843.5177689-CDS-H-paniculata_contig1789:2344..2550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1789 2345..2550 +
1622929395.7794003-CDS-H-paniculata_contig1789:2688..29471622929395.7794003-CDS-H-paniculata_contig1789:2688..2947Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1789 2689..2947 +
1691480843.5264926-CDS-H-paniculata_contig1789:2688..29471691480843.5264926-CDS-H-paniculata_contig1789:2688..2947Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1789 2689..2947 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1789.4290.1prot_H-paniculata_contig1789.4290.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1789 2345..2947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1789.4290.1

>prot_H-paniculata_contig1789.4290.1 ID=prot_H-paniculata_contig1789.4290.1|Name=mRNA_H-paniculata_contig1789.4290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp
VEVLSCVFRAGRQGADTDHSSILFDVDTKTGTILKGTTNAHWYQLGPEKI
LSTPWVSTHDTTHHPDNNKLVSGATIPDLDSKLALVADAHFKLMPDVPLV
GWDVALTTKGVYLLEVNLSCNFFRGSFDVPHYVQFVNDYFIALEDERATR
VKIE*
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mRNA from alignment at H-paniculata_contig1789:2345..2947+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1789.4290.1 ID=mRNA_H-paniculata_contig1789.4290.1|Name=mRNA_H-paniculata_contig1789.4290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=603bp|location=Sequence derived from alignment at H-paniculata_contig1789:2345..2947+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGAGGTGCTCTCATGCGTTTTTCGAGCGGGACGTCAAGGCGCCGACAC AGACCACTCATCCATCCTGTTCGACGTTGATACCAAGACCGGAACAATAT TGAAGGGTACCACCAACGCTCACTGGTATCAGCTCGGGCCGGAGAAGATT TTGAGCACCCCTTGGGTTTCAACTCACGATACTACACATCATCCAGACAA CAACAAGTGAGCAAAAAAAAAGGGTTGGAAGCGGGCCATTTTGACTTGAA GAGAAGTTGCGTGTGTGTATGTTCGTTCTAAACGACGTTATCATCGTTCT CGTGCTGTTTTGGCTGTAATACTGCGCTTTGCTGGGTTCGGCAGGTTGGT ATCTGGAGCGACGATTCCAGACTTGGACAGCAAACTGGCACTAGTTGCGG ACGCTCACTTTAAACTCATGCCAGACGTCCCGTTAGTCGGATGGGACGTA GCCCTCACCACAAAGGGTGTGTACCTGTTGGAGGTAAACTTGTCCTGCAA CTTCTTCCGCGGATCTTTCGACGTGCCACACTACGTACAATTCGTGAACG ACTACTTCATTGCCCTCGAGGACGAGCGGGCAACGCGTGTCAAGATAGAA TAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1789:2345..2947+

>mRNA_H-paniculata_contig1789.4290.1 ID=mRNA_H-paniculata_contig1789.4290.1|Name=mRNA_H-paniculata_contig1789.4290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at H-paniculata_contig1789:2345..2947+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGAGGTGCTCTCATGCGTTTTTCGAGCGGGACGTCAAGGCGCCGACAC
AGACCACTCATCCATCCTGTTCGACGTTGATACCAAGACCGGAACAATAT
TGAAGGGTACCACCAACGCTCACTGGTATCAGCTCGGGCCGGAGAAGATT
TTGAGCACCCCTTGGGTTTCAACTCACGATACTACACATCATCCAGACAA
CAACAAGTCGAGGTGCTCTCATGCGTTTTTCGAGCGGGACGTCAAGGCGC
CGACACAGACCACTCATCCATCCTGTTCGACGTTGATACCAAGACCGGAA
CAATATTGAAGGGTACCACCAACGCTCACTGGTATCAGCTCGGGCCGGAG
AAGATTTTGAGCACCCCTTGGGTTTCAACTCACGATACTACACATCATCC
AGACAACAACAAGTTGGTATCTGGAGCGACGATTCCAGACTTGGACAGCA
AACTGGCACTAGTTGCGGACGCTCACTTTAAACTCATGCCAGACGTCCCG
TTAGTCGGATGGGACGTAGCCCTCACCACAAAGGGTGTGTACCTGTTGGA
GGTAAACTTGTCCTGCAACTTCTTCCGCGGATCTTTCGACGTGCCACACT
ACGTACAATTCGTGAACGACTACTTCATTGCCCTCGAGGACGAGCGGGCA
ACGCGTGTCAAGATAGAATAGGTTGGTATCTGGAGCGACGATTCCAGACT
TGGACAGCAAACTGGCACTAGTTGCGGACGCTCACTTTAAACTCATGCCA
GACGTCCCGTTAGTCGGATGGGACGTAGCCCTCACCACAAAGGGTGTGTA
CCTGTTGGAGGTAAACTTGTCCTGCAACTTCTTCCGCGGATCTTTCGACG
TGCCACACTACGTACAATTCGTGAACGACTACTTCATTGCCCTCGAGGAC
GAGCGGGCAACGCGTGTCAAGATAGAATAG
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