mRNA_H-paniculata_contig17882.4287.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17882.4287.1
Unique NamemRNA_H-paniculata_contig17882.4287.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig17882.4287.1 vs. uniprot
Match: D7FWF2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWF2_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 9.110e-27
Identity = 58/130 (44.62%), Postives = 79/130 (60.77%), Query Frame = 1 
Query:   10 LCRIVFCIVGKQQPEEAYQRALELELRCCDVRVEKEVAQPVMYRRVEISSRRIDL---------------PVTSLTKGINCKSKTSTNCVRHLQYNMDVLSMEYGFLINFPHKAGFPSPPSGAAFVQQPL 354
            +CR VF  +G+QQ E AYQ AL++EL    V V++EV   + YR ++ISSRR+DL                V++LTKG      T+ N V  LQY +DV  + +GFL+NFPH AGFP PP+G  F Q+P+
Sbjct:  112 MCRTVFAALGRQQTESAYQMALKIELEDRGVAVQQEVKISITYRDIDISSRRVDLLLTLRDGSTAIVEMKAVSTLTKG------TNLNAVHQLQYYLDVFDINHGFLLNFPHDAGFPPPPNGGIFRQEPI 235
[Close]
BLAST of mRNA_H-paniculata_contig17882.4287.1 vs. uniprot
Match: H3H031_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H031_PHYRM)

HSP 1 Score: 68.6 bits (166), Expect = 1.820e-11
Identity = 44/121 (36.36%), Postives = 64/121 (52.89%), Query Frame = 1 
Query:   10 LCRIVFCIVGKQQPEEAYQRALELELRCCDVRVEKEVAQPVMYRRVEISSRRIDL------PVTSLTKGINCKSKTSTNCVRHLQYNMDVLSMEYGFLINFPHKAGFPSPPSGAAFVQQPL 354
            +C  V+ ++G    E  YQRAL LELR   V V  EV  P+ Y+  +I++RR+DL      PV    K +    K     ++ L++ M    +  G+LINFPH AGFP+  S   + +Q L
Sbjct:   88 ICNEVYRVLGAYNLEATYQRALALELRDRGVTVSSEVEIPIFYKGQKIATRRVDLYLKLDKPVILELKAVATGLKPEH--MKQLKFYMTQFKVREGYLINFPHIAGFPNE-SSVQYTEQVL 205
[Close]
BLAST of mRNA_H-paniculata_contig17882.4287.1 vs. uniprot
Match: A0A1M6NQT0_9BACT (GxxExxY protein n=1 Tax=Tangfeifania diversioriginum TaxID=1168035 RepID=A0A1M6NQT0_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 1.980e-5
Identity = 35/105 (33.33%), Postives = 55/105 (52.38%), Query Frame = 1 
Query:    4 QILCRIVFCIV------GKQQPEEAYQRALELELRCCDVRVEKEVAQPVMYRRVEISSRRIDLPVT-SLTKGINCKSKTS-TNCVRHLQYNMDVLSMEYGFLINF 294
            +I  +I+ C +      G    E  YQRALE+E     +  ++E   P+MYR V+I +RR+D  V  +++  I   S    TN  + L Y ++  ++E G LINF
Sbjct:   10 EITSKIIGCAMTVHNTLGSGFQEVIYQRALEIEFSFAGLYFKREFEMPIMYRDVQIGTRRVDFLVEDNISVEIKAISHLDDTNLAQGLNY-LEAYNLEVGLLINF 113
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17882.4287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FWF2_ECTSI9.110e-2744.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
H3H031_PHYRM1.820e-1136.36Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A1M6NQT0_9BACT1.980e-533.33GxxExxY protein n=1 Tax=Tangfeifania diversiorigin... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17882contigH-paniculata_contig17882:4645..5043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue9e-22
Seed eggNOG ortholog2880.D7FWF2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PD-(D/E)XK nuclease superfamily
EggNOG OGs2ET7H@1,2SVKZ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size354
Cds size354
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929395.327811-CDS-H-paniculata_contig17882:4644..48191622929395.327811-CDS-H-paniculata_contig17882:4644..4819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17882 4645..4819 +
1691480843.444614-CDS-H-paniculata_contig17882:4644..48191691480843.444614-CDS-H-paniculata_contig17882:4644..4819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17882 4645..4819 +
1622929395.3382864-CDS-H-paniculata_contig17882:4864..50431622929395.3382864-CDS-H-paniculata_contig17882:4864..5043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17882 4865..5043 +
1691480843.4535573-CDS-H-paniculata_contig17882:4864..50431691480843.4535573-CDS-H-paniculata_contig17882:4864..5043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17882 4865..5043 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17882.4287.1prot_H-paniculata_contig17882.4287.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17882 4645..5043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17882.4287.1

>prot_H-paniculata_contig17882.4287.1 ID=prot_H-paniculata_contig17882.4287.1|Name=mRNA_H-paniculata_contig17882.4287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MQILCRIVFCIVGKQQPEEAYQRALELELRCCDVRVEKEVAQPVMYRRVE
ISSRRIDLPVTSLTKGINCKSKTSTNCVRHLQYNMDVLSMEYGFLINFPH
KAGFPSPPSGAAFVQQPL
back to top

mRNA from alignment at H-paniculata_contig17882:4645..5043+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17882.4287.1 ID=mRNA_H-paniculata_contig17882.4287.1|Name=mRNA_H-paniculata_contig17882.4287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=399bp|location=Sequence derived from alignment at H-paniculata_contig17882:4645..5043+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGATCCTCTGCAGAATAGTGTTCTGCATAGTGGGCAAGCAGCAGCC
TGAAGAGGCTTACCAACGAGCCCTGGAACTCGAGCTCAGGTGCTGCGACG
TTCGAGTCGAAAAGGAAGTCGCTCAACCCGTCATGTACCGAAGAGTGGAA
ATCAGTTCCAGACGGATCGACCTCCGTTTGTAGCTACCCGATGGATCCGA
TGAGATGGTAAATATGAAAGCTGTCACGTCGCTGACCAAGGGGATCAACT
GCAAGTCCAAAACAAGTACAAATTGTGTGCGGCATCTCCAATACAACATG
GACGTGCTTAGCATGGAATACGGATTTCTCATCAACTTCCCGCACAAGGC
GGGCTTCCCCTCGCCTCCTAGCGGCGCCGCGTTTGTCCAGCAGCCGCTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig17882:4645..5043+

>mRNA_H-paniculata_contig17882.4287.1 ID=mRNA_H-paniculata_contig17882.4287.1|Name=mRNA_H-paniculata_contig17882.4287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig17882:4645..5043+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGATCCTCTGCAGAATAGTGTTCTGCATAGTGGGCAAGCAGCAGCC
TGAAGAGGCTTACCAACGAGCCCTGGAACTCGAGCTCAGGTGCTGCGACG
TTCGAGTCGAAAAGGAAGTCGCTCAACCCGTCATGTACCGAAGAGTGGAA
ATCAGTTCCAGACGGATCGACCTCCATGCAGATCCTCTGCAGAATAGTGT
TCTGCATAGTGGGCAAGCAGCAGCCTGAAGAGGCTTACCAACGAGCCCTG
GAACTCGAGCTCAGGTGCTGCGACGTTCGAGTCGAAAAGGAAGTCGCTCA
ACCCGTCATGTACCGAAGAGTGGAAATCAGTTCCAGACGGATCGACCTCC
CTGTCACGTCGCTGACCAAGGGGATCAACTGCAAGTCCAAAACAAGTACA
AATTGTGTGCGGCATCTCCAATACAACATGGACGTGCTTAGCATGGAATA
CGGATTTCTCATCAACTTCCCGCACAAGGCGGGCTTCCCCTCGCCTCCTA
GCGGCGCCGCGTTTGTCCAGCAGCCGCTCCTGTCACGTCGCTGACCAAGG
GGATCAACTGCAAGTCCAAAACAAGTACAAATTGTGTGCGGCATCTCCAA
TACAACATGGACGTGCTTAGCATGGAATACGGATTTCTCATCAACTTCCC
GCACAAGGCGGGCTTCCCCTCGCCTCCTAGCGGCGCCGCGTTTGTCCAGC
AGCCGCTC
back to top