mRNA_H-paniculata_contig17875.4284.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17875.4284.1
Unique NamemRNA_H-paniculata_contig17875.4284.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17875.4284.1 vs. uniprot
Match: D7FIQ7_ECTSI (GRAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIQ7_ECTSI)

HSP 1 Score: 230 bits (586), Expect = 6.090e-67
Identity = 132/199 (66.33%), Postives = 152/199 (76.38%), Query Frame = 1 
Query:   28 GLVPPRPTRSKPLSAYSLTTRRPPVASCGVEEARKIVERARKHVAVAALENYSAERKGEGLEDD-----------------DKGEGRREGEVMATAAAAEGIRALIRATWEDVKEWCDEEAEARVRRKDSQVRDRLLAVERHREALIAALRDGAGGSAASTTPGRLEFAARFRPMAAEAVLAECKAVHTKRVGTLYLTC 573
            GL PPRPTRSKPLSAY LTTRRPPV++CGVEEAR+++ERAR+HV      +    +KG  ++D+                 D+G G +   V + ++ AEGIR+LIRATWEDVKEWCDEEAEARVRRKD+QVRDRLLAVE HREALIAALRDGAGGSAAS+TP   EFAARFRPMA EAVL +CKAVH KRVG LYLTC
Sbjct:  539 GLAPPRPTRSKPLSAYPLTTRRPPVSACGVEEAREVMERAREHVRGGG--DSFPPQKGVDVDDENVFASGGXXXXXXXXXXDEGRGAK---VGSGSSVAEGIRSLIRATWEDVKEWCDEEAEARVRRKDAQVRDRLLAVEGHREALIAALRDGAGGSAASSTPAGREFAARFRPMAKEAVLCQCKAVHAKRVGQLYLTC 732
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17875.4284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIQ7_ECTSI6.090e-6766.33GRAM domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17875contigH-paniculata_contig17875:1868..4502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size579
Cds size579
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929395.1305614-CDS-H-paniculata_contig17875:1867..22361622929395.1305614-CDS-H-paniculata_contig17875:1867..2236Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17875 1868..2236 +
1691480843.3316832-CDS-H-paniculata_contig17875:1867..22361691480843.3316832-CDS-H-paniculata_contig17875:1867..2236Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17875 1868..2236 +
1622929395.1441607-CDS-H-paniculata_contig17875:4292..45021622929395.1441607-CDS-H-paniculata_contig17875:4292..4502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17875 4293..4502 +
1691480843.3506293-CDS-H-paniculata_contig17875:4292..45021691480843.3506293-CDS-H-paniculata_contig17875:4292..4502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17875 4293..4502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17875.4284.1prot_H-paniculata_contig17875.4284.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17875 1868..4502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17875.4284.1

>prot_H-paniculata_contig17875.4284.1 ID=prot_H-paniculata_contig17875.4284.1|Name=mRNA_H-paniculata_contig17875.4284.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=193bp
TLPPPPEKSGLVPPRPTRSKPLSAYSLTTRRPPVASCGVEEARKIVERAR
KHVAVAALENYSAERKGEGLEDDDKGEGRREGEVMATAAAAEGIRALIRA
TWEDVKEWCDEEAEARVRRKDSQVRDRLLAVERHREALIAALRDGAGGSA
ASTTPGRLEFAARFRPMAAEAVLAECKAVHTKRVGTLYLTCK*
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mRNA from alignment at H-paniculata_contig17875:1868..4502+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17875.4284.1 ID=mRNA_H-paniculata_contig17875.4284.1|Name=mRNA_H-paniculata_contig17875.4284.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2635bp|location=Sequence derived from alignment at H-paniculata_contig17875:1868..4502+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCCTTCCCCCCCCCCCTGAAAAATCAGGTCTTGTGCCCCCGCGGCCCAC
CCGATCCAAGCCTCTGTCGGCATACTCGCTCACGACACGCCGTCCACCGG
TGGCCTCCTGCGGGGTAGAAGAGGCTAGGAAGATCGTCGAGCGAGCACGA
AAGCACGTTGCTGTCGCCGCTTTGGAAAATTACAGTGCGGAGCGAAAAGG
AGAGGGGCTAGAGGATGACGATAAGGGGGAAGGAAGGAGGGAGGGAGAGG
TGATGGCAACGGCAGCGGCGGCGGAAGGAATTCGGGCACTGATCCGGGCG
ACTTGGGAGGACGTGAAAGAGTGGTGTGATGAGGAAGCAGAGGCTAGGGT
TCGAAGGAAGGATTCGCAGGTGATTTCATTAATTAGTACGAGACATTATT
TTTTTTCAAATGGATGGATGGATGGATGAATGAATCGAGGGAGAGAGGGA
GAGAGGGAGAGAGGTTTTTGGGGGTAGGGGAGGTTGTTGAAGGGTGTGTG
AGTGATTGATGTGGTTTTGCTTCAGAGGTTGCGATATGTACCGTGTATGT
GTGTGACTATGTACTGTGTCTATGTGACTTGTCTCTAGCGCGATCTTCTT
TTTTTATAAGTTTGTTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCA
AAGTTGATTTAGTTACGTACGTATTTTGTGTAGTTGTCTTCTTCGTCAGG
TTCTGCGAATGAAAAAGGCAAACTATTAGGTTGTGCCGCGCTGCCCACAA
AGATCTTACTACATACGTGATCAAGTTACAGTAGATACAGTTAATACAAC
GGCTAGTGTGGACATATTGGTTGTCTAACTTGTGCTCCTTGGCGGTATGT
TTTAGGTTTTCATGAATTGCATTGGATTCACTGCAATCTCGGCGCCAAAA
GACCCCAAACCATCCCCCCCCCCGAATTGATAACATAATATAGCTTAATG
GCCCGTACACGAAGCTTGCCCGCGCAATCCCTCGGTTGAGGACCTTTTAT
AGCCTGCCGAGCATGTCTAGCGCTGAATGCGTTGCCCAAGACAGCAGTGC
GAAATAGTCATATCGCAAAGGAGCAAAGGGCAGGGATTGCTGAGCTCCTC
AAAAGGCAGCAACAACGGCAAACAGCATCTACGCGAGCGATCTCAGCTCA
AGTTCTTCACCCAGGGGGATCATGCGAGTGGGGTCCGAAACTCCGGAGAT
AATATTTAGTTGTCCCCGGTCAACTCCGGGGATTGTTTCATGCTTTCCCC
CCGTTGTTAGCTGGCACCCTTTGCGTTCTACTGTAACACCCTTTGATATC
TATCGTACCCCCCTGGTACTGTTTTATGAATCCGGTGTCCTCGAGAAGCA
GGAGCTTGCACTGCCGACACAGCAAATCTATCGATACACCTCAACAAGAG
TTTTTTTTTTGAACCCCCGGAAGGCTGAGGCAAAAAACTTTACCGATGCT
TCCATACTTAGGTATTTCATCAAAGTATTTTTGCATTTCCTTTAACAGAA
CAGAGTTATTTATTCCTCTGCGGGGTAGGCGCCACCCCGGTTCGGCCGAA
CTAAGTAGGCGGTGAGGGGGATGCACCCACTAAGACCTCTGACTAGACTT
CCAGTCGTGCTCAGTTCACAAGCTACCCTACCCGTTCGGGCGTAGGTCCG
TAGCTCAACGAGATCTTTCCGACGATACCGTTGTCGGTATCATGAGCACC
GTCGTTGTTGAGAAAACCGTGTTTGAAAAACAATGTGAGGGGGTTTGATA
TCAGACAGTGTTACAGGTACTTCAGCTGTAGCTATATCTAGTATGGTCTG
TGTATGGGAGGGCGCAATTTGTAGGTTCTCGTGTAGTCGGTAACTCCTTC
AGCCATGGAAAACCGGGGATGGTATCTAGCCATCCCCTTCTCACCTCGGA
AATAATTTGCATTCCCCCCCCTCCCCCCCCCCCCCTTTACCTAAGACGCC
ACGTTGAAACGTTCTTGGGGGGGCTTTCCATCTAGACCCTGCCAAGGCGC
TGCGTAGTGGTGTAGTTAATACGTGCAGCCGACGCGTTTTGTTTGGAATT
AGAGTGAGATGTGATTATTGATACGTACATGCGCTGATGCAATATTTGAA
GAAAAAAGACGTGACCAAGTCTTTCTTTCCCTTTGTTTTTTTTATTTCAA
AACGTCATTTTTCTCTTAAGAAGCAAAAGTGACGGCGAAATAACCTTCAA
GCACTATTTCGGTAATATTTTTTGCTTTTTTGTTCTTTTTGTCTTCTCTG
CTCTCCCCTCTCCTATCCCCCCCCCATGTTAATTTGTGAAACCAGTCGTC
GCCTAGCGATTTAAATTGCCTGAGGGTACCTCCAGCTTTGATTGGTTAAT
GTTTATGGTTATGTTTTCTATGTATTCTTAACGTGTTCCAAACCGTATTC
ACATGCCCCCCCCCCCCTTATGCAGGTACGAGACCGTCTCCTAGCCGTTG
AACGCCACCGCGAGGCCCTGATCGCCGCACTGCGGGACGGAGCAGGCGGC
TCAGCAGCCTCCACCACCCCCGGCCGGTTAGAGTTTGCCGCTCGATTTCG
TCCGATGGCAGCCGAGGCGGTGCTCGCCGAGTGCAAGGCTGTCCACACCA
AACGTGTGGGAACACTCTACCTTACGTGCAAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig17875:1868..4502+

>mRNA_H-paniculata_contig17875.4284.1 ID=mRNA_H-paniculata_contig17875.4284.1|Name=mRNA_H-paniculata_contig17875.4284.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1158bp|location=Sequence derived from alignment at H-paniculata_contig17875:1868..4502+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCCTTCCCCCCCCCCCTGAAAAATCAGGTCTTGTGCCCCCGCGGCCCAC
CCGATCCAAGCCTCTGTCGGCATACTCGCTCACGACACGCCGTCCACCGG
TGGCCTCCTGCGGGGTAGAAGAGGCTAGGAAGATCGTCGAGCGAGCACGA
AAGCACGTTGCTGTCGCCGCTTTGGAAAATTACAGTGCGGAGCGAAAAGG
AGAGGGGCTAGAGGATGACGATAAGGGGGAAGGAAGGAGGGAGGGAGAGG
TGATGGCAACGGCAGCGGCGGCGGAAGGAATTCGGGCACTGATCCGGGCG
ACTTGGGAGGACGTGAAAGAGTGGTGTGATGAGGAAGCAGAGGCTAGGGT
TCGAAGGAAGGATTCGCAGACCCTTCCCCCCCCCCCTGAAAAATCAGGTC
TTGTGCCCCCGCGGCCCACCCGATCCAAGCCTCTGTCGGCATACTCGCTC
ACGACACGCCGTCCACCGGTGGCCTCCTGCGGGGTAGAAGAGGCTAGGAA
GATCGTCGAGCGAGCACGAAAGCACGTTGCTGTCGCCGCTTTGGAAAATT
ACAGTGCGGAGCGAAAAGGAGAGGGGCTAGAGGATGACGATAAGGGGGAA
GGAAGGAGGGAGGGAGAGGTGATGGCAACGGCAGCGGCGGCGGAAGGAAT
TCGGGCACTGATCCGGGCGACTTGGGAGGACGTGAAAGAGTGGTGTGATG
AGGAAGCAGAGGCTAGGGTTCGAAGGAAGGATTCGCAGGTACGAGACCGT
CTCCTAGCCGTTGAACGCCACCGCGAGGCCCTGATCGCCGCACTGCGGGA
CGGAGCAGGCGGCTCAGCAGCCTCCACCACCCCCGGCCGGTTAGAGTTTG
CCGCTCGATTTCGTCCGATGGCAGCCGAGGCGGTGCTCGCCGAGTGCAAG
GCTGTCCACACCAAACGTGTGGGAACACTCTACCTTACGTGCAAGTGAGT
ACGAGACCGTCTCCTAGCCGTTGAACGCCACCGCGAGGCCCTGATCGCCG
CACTGCGGGACGGAGCAGGCGGCTCAGCAGCCTCCACCACCCCCGGCCGG
TTAGAGTTTGCCGCTCGATTTCGTCCGATGGCAGCCGAGGCGGTGCTCGC
CGAGTGCAAGGCTGTCCACACCAAACGTGTGGGAACACTCTACCTTACGT
GCAAGTGA
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