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Homology
BLAST of mRNA_H-paniculata_contig17873.4282.1 vs. uniprot
Match: D7G1L0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L0_ECTSI) HSP 1 Score: 81.3 bits (199), Expect = 6.200e-12 Identity = 45/95 (47.37%), Postives = 54/95 (56.84%), Query Frame = 0
Query: 119 SRRFVKMIDGMPTGAWRAVLRELDEVE------GAAALAATPNTGRAVSTHMYCSCIRHMAKGKRWREAVAILHRMRAAGVPPNDFCTTAAIRAC 207
SR FV I GM WR V+REL+E E G A T + VS+H Y SC+ H+AK RWREA+A+ RM A GV PN FC A + AC
Sbjct: 111 SRDFVVKIRGMSRWNWRGVMRELEEAETAEAKFGEAEKGTTGGSDGRVSSHAYNSCLMHLAKCSRWREALAVFERMWARGVTPNSFCLNATLEAC 205
BLAST of mRNA_H-paniculata_contig17873.4282.1 vs. uniprot
Match: A0A6H5K890_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K890_9PHAE) HSP 1 Score: 61.6 bits (148), Expect = 6.900e-6 Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 0
Query: 160 VSTHMYCSCIRHMAKGKRWREAVAILHRMRAAGVPPNDFCTTAAIRAC 207
VS+H Y SC+ H+AK RWREA+A+ RM A GV PN FC A + AC
Sbjct: 137 VSSHAYNSCLMHLAKCSRWREALAVFERMWARGVTPNSFCLNATLEAC 184
BLAST of mRNA_H-paniculata_contig17873.4282.1 vs. uniprot
Match: D8LSE7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSE7_ECTSI) HSP 1 Score: 58.2 bits (139), Expect = 6.810e-5 Identity = 41/102 (40.20%), Postives = 55/102 (53.92%), Query Frame = 0
Query: 115 GTSYSRRFVKMIDGMPTGAWRA-----VLRELDEVEGAAALAATPNTGRA--------VSTHMYCSCIRHMAKGKRWREAVAILHRMRAAGVPPNDFCTTAA 203
G S S FVK I +P W VL+E + AAA AA + G A +++ MY +CI HM+ RW++A+ IL MRAA PP++FC TAA
Sbjct: 106 GKSRSFLFVKEIKAIPK--WNGERVMNVLKEAQRLSEAAAAAAPGDGGGAADARRGLEMTSFMYNACISHMSSCGRWQQALEILELMRAADFPPDEFCVTAA 205
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR033443 | Pentacotripeptide-repeat region of PRORP | PFAM | PF17177 | PPR_long | coord: 342..506
e-value: 2.7E-16
score: 59.6 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF12854 | PPR_1 | coord: 614..646
e-value: 1.4E-7
score: 31.0 |
| IPR002885 | Pentatricopeptide repeat | TIGRFAM | TIGR00756 | TIGR00756 | coord: 375..401
e-value: 1.4E-5
score: 22.9
coord: 691..717
e-value: 5.3E-6
score: 24.3
coord: 585..618
e-value: 5.0E-7
score: 27.5
coord: 445..477
e-value: 1.0E-4
score: 20.2
coord: 339..370
e-value: 2.9E-5
score: 22.0
coord: 515..548
e-value: 1.8E-5
score: 22.6
coord: 234..267
e-value: 1.9E-5
score: 22.5
coord: 409..443
e-value: 4.6E-8
score: 30.8
coord: 164..196
e-value: 4.5E-6
score: 24.5
coord: 304..337
e-value: 1.9E-5
score: 22.5
coord: 480..512
e-value: 5.5E-5
score: 21.1
coord: 549..583
e-value: 0.0014
score: 16.6
coord: 763..797
e-value: 1.0E-9
score: 36.0
coord: 269..302
e-value: 1.3E-6
score: 26.2
coord: 728..758
e-value: 2.9E-8
score: 31.4
coord: 834..868
e-value: 1.4E-7
score: 29.2
coord: 620..653
e-value: 2.8E-6
score: 25.1 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13041 | PPR_2 | coord: 546..596
e-value: 3.7E-12
score: 46.2
coord: 832..878
e-value: 4.3E-12
score: 46.0
coord: 232..278
e-value: 4.6E-11
score: 42.7
coord: 762..807
e-value: 4.2E-13
score: 49.3 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF01535 | PPR | coord: 304..334
e-value: 6.7E-4
score: 19.7
coord: 691..717
e-value: 4.1E-6
score: 26.7
coord: 728..757
e-value: 3.5E-7
score: 30.0
coord: 164..193
e-value: 0.14
score: 12.5
coord: 515..543
e-value: 0.03
score: 14.6
coord: 201..221
e-value: 0.13
score: 12.6 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 867..887
score: 5.097 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 372..406
score: 9.898 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 161..195
score: 9.909 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 832..866
score: 12.375 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 442..476
score: 11.52 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 688..722
score: 10.402 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 512..546
score: 10.216 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 196..230
score: 9.153 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 267..301
score: 11.488 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 618..652
score: 10.687 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 761..795
score: 12.189 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 547..577
score: 8.955 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 407..441
score: 11.948 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 796..830
score: 9.076 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 653..687
score: 9.153 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 583..617
score: 11.268 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 302..336
score: 11.531 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 337..371
score: 10.413 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 726..760
score: 12.211 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 477..511
score: 10.731 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 232..266
score: 11.981 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 486..660
e-value: 2.5E-51
score: 176.8
coord: 759..886
e-value: 3.6E-34
score: 120.5 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 119..225
e-value: 4.7E-11
score: 44.5
coord: 679..758
e-value: 3.0E-15
score: 58.2 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 226..311
e-value: 8.5E-26
score: 92.4
coord: 404..485
e-value: 1.8E-25
score: 91.3
coord: 312..403
e-value: 4.1E-24
score: 86.9 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | SUPERFAMILY | 48452 | TPR-like | coord: 631..787 |
| None | No IPR available | PANTHER | PTHR46128 | FAMILY NOT NAMED | coord: 560..756
coord: 164..312
coord: 287..452
coord: 438..583
coord: 651..822
coord: 762..881 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_H-paniculata_contig17873.4282.1 ID=prot_H-paniculata_contig17873.4282.1|Name=mRNA_H-paniculata_contig17873.4282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=888bp
MHSLGNAAVSRAVSGSAWLLTSPQQLHSRSQFSVSSRRYSSSSSSCCSST
ITNNSTTFTRRVSEPQLCLSTHLPAPIQAKNEPSSRSRKGPQQLSTGRRG
EREVRGIADRIRYSGTSYSRRFVKMIDGMPTGAWRAVLRELDEVEGAAAL
AATPNTGRAVSTHMYCSCIRHMAKGKRWREAVAILHRMRAAGVPPNDFCT
TAAIRACGEAGQWEKALELLEAVGAEGMAPLSVVTFNTVIKACDKGGKWE
MAVRLLAEMPAAGVTPSVISYNSVITACGNGGQWAKAMELLHNMPSVGLT
PDNITYNAAITACDRGGEWEKALALLGEMRRAGVPLDKFTYCSAIKACGN
GQQVEKAMEFLAEMKAEGIPLCEIAYNSAIYACAQGGKWEAALELLREMQ
AAVVWPNVISYNSAIYACGNGGEWQRALELVQEMRTAGIVPNARTYGTAI
TACDRAGQWERALQILGEMRTAGLAPDPIAYTAAISACGSRGKWEKSVEL
LAEMRATGLPVTVFAYSAAMTACRNGGYWEKALAMLDDMRAEGTKPNVVV
YNSAISACDSGGQWTKALDLLAEMKDTPGVTPNIVTYNAVISACCSAGCW
KEGLLLIDGIEAAGLVPNHITYSTAITGCGNAGRWNEALAVLERMRQSET
RLDVTAYSAVIKACDKCCKWEEGLAIFDEARGSEIELDTILFNAAITAYG
AWGKWEKALELFDEMKTNAYPNVEIDTITYNAVMDACGSSRQWETALKLF
EEMVDAGMAIGVITYNAAMKACGHAGQVEKALQLLKDMQATGLEPDAFSY
STVIAACGSIGLWENALALLEQNRKSGATEVSVVTYNAAINACAGAGQRQ
RAVKLLEEMREAGVQPDTLTYNSVVRAFETENKGQGG* back to top
Annotated Terms
The following terms have been associated with this polypeptide:
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