mRNA_H-paniculata_contig17861.4278.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17861.4278.1
Unique NamemRNA_H-paniculata_contig17861.4278.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig17861.4278.1 vs. uniprot
Match: D7G6K1_ECTSI (CRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K1_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 2.210e-10
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:  460 VHQGNAIGAKA--EFGLSDGILEELWRRPRKHFFSIGKSGLKPSHLRSLRELVQAHTLVKVK 639
            ++ G  + A A  EF L++  +EELW R +K   S+GK G+KPSH+RSL  L+ AHTLVKVK
Sbjct:    1 MNAGGEVSAAAVPEFDLAEKTVEELWMRVKKQLISVGKGGIKPSHVRSLNSLIAAHTLVKVK 62
[Close]
BLAST of mRNA_H-paniculata_contig17861.4278.1 vs. uniprot
Match: A0A6H5JP08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP08_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.660e-9
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:  493 EFGLSDGILEELWRRPRKHFFSIGKSGLKPSHLRSLRELVQAHTLVKVK 639
            EF L++  +EELW R +K   S+GK G+KPSH+RSL  L+ AHTLVKVK
Sbjct:   91 EFDLAEKTVEELWMRVKKQLISVGKGGIKPSHVRSLNSLIAAHTLVKVK 139
[Close]
BLAST of mRNA_H-paniculata_contig17861.4278.1 vs. uniprot
Match: A0A835YHR7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHR7_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 3.780e-8
Identity = 26/47 (55.32%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:  499 GLSDGILEELWRRPRKHFFSIGKSGLKPSHLRSLRELVQAHTLVKVK 639
            GLS+  +EELWR+P+K    IG+ G+  SH+RSL +LVQ HT+V+VK
Sbjct:   59 GLSEATIEELWRKPKKELLKIGQGGVTASHVRSLTDLVQHHTIVRVK 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17861.4278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G6K1_ECTSI2.210e-1051.61CRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JP08_9PHAE2.660e-959.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YHR7_9STRA3.780e-855.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17861contigH-paniculata_contig17861:8..2623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionRNA-binding, CRM domain
Ec32 orthologEc-05_006480.1
Exons3
Model size891
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17861.4278.1prot_H-paniculata_contig17861.4278.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17861 203..2545 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929394.1753585-UTR-H-paniculata_contig17861:7..2021622929394.1753585-UTR-H-paniculata_contig17861:7..202Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17861 8..202 -
1691480843.0365021-UTR-H-paniculata_contig17861:7..2021691480843.0365021-UTR-H-paniculata_contig17861:7..202Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17861 8..202 -
1622929394.2518904-UTR-H-paniculata_contig17861:2545..26231622929394.2518904-UTR-H-paniculata_contig17861:2545..2623Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17861 2546..2623 -
1691480843.0854306-UTR-H-paniculata_contig17861:2545..26231691480843.0854306-UTR-H-paniculata_contig17861:2545..2623Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17861 2546..2623 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929394.1977863-CDS-H-paniculata_contig17861:202..2591622929394.1977863-CDS-H-paniculata_contig17861:202..259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17861 203..259 -
1691480843.0484972-CDS-H-paniculata_contig17861:202..2591691480843.0484972-CDS-H-paniculata_contig17861:202..259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17861 203..259 -
1622929394.215726-CDS-H-paniculata_contig17861:1309..14261622929394.215726-CDS-H-paniculata_contig17861:1309..1426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17861 1310..1426 -
1691480843.0593731-CDS-H-paniculata_contig17861:1309..14261691480843.0593731-CDS-H-paniculata_contig17861:1309..1426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17861 1310..1426 -
1622929394.2315876-CDS-H-paniculata_contig17861:2101..25451622929394.2315876-CDS-H-paniculata_contig17861:2101..2545Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17861 2102..2545 -
1691480843.0748985-CDS-H-paniculata_contig17861:2101..25451691480843.0748985-CDS-H-paniculata_contig17861:2101..2545Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17861 2102..2545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17861.4278.1

>prot_H-paniculata_contig17861.4278.1 ID=prot_H-paniculata_contig17861.4278.1|Name=mRNA_H-paniculata_contig17861.4278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=206bp
MRCMPLTLAFFATASAVPDTCPSFILTPSHRTTPSLCFLSWCTTTSSMLR
RVSDPYAPTTLPRSNNLPDRAWSPWLRKTSAIQREYSQGLRAQRTLCLQQ
RRELFASYRRYRSVGVSCIAQDIERENVHQGNAIGAKAEFGLSDGILEEL
WRRPRKHFFSIGKSGLKPSHLRSLRELVQAHTLVKVKYLEARFEVRRDGL
WMSSL*
back to top

mRNA from alignment at H-paniculata_contig17861:8..2623-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17861.4278.1 ID=mRNA_H-paniculata_contig17861.4278.1|Name=mRNA_H-paniculata_contig17861.4278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2616bp|location=Sequence derived from alignment at H-paniculata_contig17861:8..2623- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTGCTCGACCTTCTCTGAGAGCGTGCCTTTGCAGAGGTGACCAACAGC
AGACAGACCCGTCGAACCCAATATCGATATGCGTTGCATGCCACTGACAT
TGGCCTTTTTCGCAACTGCATCAGCTGTGCCTGATACCTGCCCCAGCTTC
ATCCTAACTCCTTCTCATCGGACAACGCCATCATTATGTTTTTTGTCGTG
GTGCACTACGACATCATCAATGTTGAGGAGGGTTTCTGACCCATATGCAC
CAACAACTCTTCCGCGCAGCAACAACCTGCCGGATCGTGCATGGTCGCCG
TGGTTGCGAAAGACCTCTGCCATACAGCGAGAATATTCACAGGGTCTTCG
AGCACAGCGGACCCTCTGCTTGCAGCAACGACGCGAGTTGTTTGCAAGCT
ACAGGAGATACCGTAGTGTAGGTGTTTCATGCATCGCACAGGACATCGAG
AGAGAAAACGTCCACCAAGGCAACGCCATTGGAGCGAAAGCTGAGTTCGG
GTTGAGCGACGGTATACTTGAGGTATGGATATGACATAGTAGGTAGGAGT
CGCTTTACCACGAGTATGTGTTGGCATAGTAGCGGTCGTGCTAGTGCCCG
TATAAAAGGGTGACGTTCTATACTAGATATGTACTACTACAGACTATTGA
GAACAGTATTTAGTGAGAACGAGCTTTCGCTATTCGGCAAACCTTGTACA
GTATGCGATGTTCATTGAAGATCATTGGACAACAAAGCTTCCCTACTTCA
TGTACGCAGCGTTGGGGCTCCGCGAACGAACCGTTGGTTGCTTTGAGAAC
TACATATCTAGCTCACGGTTCATGACCCCCCGTCAGCGCTACTAAATACT
TTAGTCCTTGGTTTATCGTTTTTTACAGCGCCTGTCCTTCTTGAACATTG
AGTGATCAATTGGATGTCGTCAACCGCACAAGTGGGGAGACCGAGAAATT
TTGGTAGTATTTCTGGCATTTCCACCGGTCTTCTTTTGGATCATCTCCCC
GCAGTAGTGGAGTTTCATCATCACTTTTTTTTAACTACGGTTGACGAAAA
TTACCAAGCACATGCTACGAGAATCCAGAAATAAACCAGAACGTTCTCAC
GAATAGCCGTCCTAAGTAGTTCTCACGAATGTATGCATAGTGGGCAGGCC
GCGTTTCTGCTCACTGGGCTCACTCATGGTGTGTTTTGTTTCCCCAGGAA
CTGTGGAGAAGACCGCGGAAACATTTCTTCAGCATCGGTAAATCAGGGCT
CAAGCCTAGCCACCTTCGCTCGCTCAGGGAATTGGTCCAAGCGCACACGC
TGGTGAAAGTGAAGGTGCGTGTACACATTCGTCGGTTCTTCATGTCCCGT
TTCCATTGTCGTAACTGTATCTTATAGTATCCGAAAAGGACTACTCAAAG
TATACCCTTAAGTGGCACCCGCCCCCTTTGTAGTGCTTGACGCTGCGTCT
GATTTGCTGAAATGTAGCAGAGTCATAAGTATATGTAGAGAAACGCCTAT
ATTCTGAAGGGAAGTAAGGTTGGTTTAGCACGGAACTTAGAATACAGAAT
AATGGTAATTTTGCGGGACTAAATTGAAGTTACGTAGTTCATTGCACGTC
TCATGTTGGAATCGCAACAGCTGATGCCTTTCATGACCTAAATACATGCT
TCGCAGAAGAAACAAGACAACCCGAAAAAGCTTTGATTTCGACCTGGCCC
TGGTCCGCTTAGTTTGTTCAGTTTGTGGATAATAACCAAGTAATCCAACA
GCTTGAACAGCTGAGCATACCTCCATTTTATTTTTCGGTTATCATCGTGT
TTTCTAAGTCCTCGTGCGCCCCCCGAAGCGCATTAAGACAAGATTCATGA
TACCAAGACGAACACAATATATCCACATTCTACTGTAAACCGCACCCTTC
CTGCCTCCGTTGGTAGTTTCGTGCAATTTGTCACTCCATGGAATTGTTTT
TTTTATCAAACTCGATTCTTTCGCGAAGCCAAGACCCTGTACTTTCCCAA
AAACACAGTACGCCGTTCGTCGAGATATCGATGAAACTATTTCGATGGTA
CAACTTGAGGTATTGCAAGCACTGTAGTTTCGGTAACATAATTTCGTGAA
ACCTTCTAGTATAGGCCTAGCCCCATCCCCCCTCTTTGTTTTGGCATTTT
TGCTGGTTTTCTTCATATATTTTACATTTTACGCATGTGCCATCTTTTTT
TAGGCATACATAAGTCGCATTGGTCATTTGCCCGAAAAACGCAAGCTACC
AGGGTCTTGTCTGCAGAGGTGCAACAGCGAAATAAAATACTCTGAATTCT
GCGTCACACAGTCGAGTTTGATGCATCTTTTATCGGGGGGTGATGTATGG
TCTCTATCCTACAGTACCTCGAAGCACGCTTCGAGGTCAGGCGGGATGGA
TTATGGATGTCATCATTGTAGCCATCGTTGTCCATAACAACCGCGGCAGC
ATGGGACACCCTTGCAGCAGCAGCTAAAGGTCGCCATCGCTGCCCAGCGA
TGGAAACTCTCGGTGCTTCCACGGACATACGCCCGAACGGGTAGGGTAGC
TGGTGAACTGAGCATGAGTGGAAGTCTAGTCAGAGGTCTTTTAGTGGGTG
CGACCCCCACACTGCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig17861:8..2623-

>mRNA_H-paniculata_contig17861.4278.1 ID=mRNA_H-paniculata_contig17861.4278.1|Name=mRNA_H-paniculata_contig17861.4278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1236bp|location=Sequence derived from alignment at H-paniculata_contig17861:8..2623- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTTGCATGCCACTGACATTGGCCTTTTTCGCAACTGCATCAGCTGT
GCCTGATACCTGCCCCAGCTTCATCCTAACTCCTTCTCATCGGACAACGC
CATCATTATGTTTTTTGTCGTGGTGCACTACGACATCATCAATGTTGAGG
AGGGTTTCTGACCCATATGCACCAACAACTCTTCCGCGCAGCAACAACCT
GCCGGATCGTGCATGGTCGCCGTGGTTGCGAAAGACCTCTGCCATACAGC
GAGAATATTCACAGGGTCTTCGAGCACAGCGGACCCTCTGCTTGCAGCAA
CGACGCGAGTTGTTTGCAAGCTACAGGAGATACCGTAGTGTAGGTGTTTC
ATGCATCGCACAGGACATCGAGAGAGAAAACGTCCACCAAGGCAACGCCA
TTGGAGCGAAAGCTGAGTTCGGGTTGAGCGACGGTATACTTGAGATGCGT
TGCATGCCACTGACATTGGCCTTTTTCGCAACTGCATCAGCTGTGCCTGA
TACCTGCCCCAGCTTCATCCTAACTCCTTCTCATCGGACAACGCCATCAT
TATGTTTTTTGTCGTGGTGCACTACGACATCATCAATGTTGAGGAGGGTT
TCTGACCCATATGCACCAACAACTCTTCCGCGCAGCAACAACCTGCCGGA
TCGTGCATGGTCGCCGTGGTTGCGAAAGACCTCTGCCATACAGCGAGAAT
ATTCACAGGGTCTTCGAGCACAGCGGACCCTCTGCTTGCAGCAACGACGC
GAGTTGTTTGCAAGCTACAGGAGATACCGTAGTGTAGGTGTTTCATGCAT
CGCACAGGACATCGAGAGAGAAAACGTCCACCAAGGCAACGCCATTGGAG
CGAAAGCTGAGTTCGGGTTGAGCGACGGTATACTTGAGGAACTGTGGAGA
AGACCGCGGAAACATTTCTTCAGCATCGGTAAATCAGGGCTCAAGCCTAG
CCACCTTCGCTCGCTCAGGGAATTGGTCCAAGCGCACACGCTGGTGAAAG
TGAAGGAACTGTGGAGAAGACCGCGGAAACATTTCTTCAGCATCGGTAAA
TCAGGGCTCAAGCCTAGCCACCTTCGCTCGCTCAGGGAATTGGTCCAAGC
GCACACGCTGGTGAAAGTGAAGTACCTCGAAGCACGCTTCGAGGTCAGGC
GGGATGGATTATGGATGTCATCATTGTAGTACCTCGAAGCACGCTTCGAG
GTCAGGCGGGATGGATTATGGATGTCATCATTGTAG
back to top