mRNA_H-paniculata_contig1786.4277.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1786.4277.1
Unique NamemRNA_H-paniculata_contig1786.4277.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1786.4277.1 vs. uniprot
Match: A0A6H5JR35_9PHAE (Riboflavin kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JR35_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.200e-25
Identity = 63/94 (67.02%), Postives = 69/94 (73.40%), Query Frame = 1 
Query:    4 RETHNRRQAAVFDAKAGFFASDQATPAKVMPSLRRIAEACRLDGSEDDGTVTAAAAGRVVDVGCGTGALVNFLKEAGVAERSVVGVDVSPKVIT 285
            RE HNRRQAAVFD+K  FF+S QATP +  PSLRRIAEACR      DG      A RVVD GCGTGALV+FLKEAGV ER V GVDVSP++ T
Sbjct:   61 REAHNRRQAAVFDSKVAFFSSPQATPKEQFPSLRRIAEACRPSA---DG------APRVVDAGCGTGALVSFLKEAGVKERDVTGVDVSPEMGT 145
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BLAST of mRNA_H-paniculata_contig1786.4277.1 vs. uniprot
Match: A0A7S1U2N2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2N2_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 7.440e-16
Identity = 50/85 (58.82%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:    4 RETHNRRQAAVFDAKAGFFASDQATPAKVMPSLRRIAEACRLDGSEDDGTVTAAAAGRVVDVGCGTGALVNFLKEAGVAERSVVG 258
            R  HN  QAA FD  A FFASD+ATPA V P LRRIA AC L  + D      A AG VVDVGCGTGALV +L  AG+A  S +G
Sbjct:   28 RAAHNADQAAAFDEAAAFFASDEATPAFVEPVLRRIA-ACALAPALD-AAADGATAGVVVDVGCGTGALVPYLFAAGLAPESYLG 110
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BLAST of mRNA_H-paniculata_contig1786.4277.1 vs. uniprot
Match: A0A7R9Y8N6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y8N6_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.960e-15
Identity = 50/98 (51.02%), Postives = 63/98 (64.29%), Query Frame = 1 
Query:    4 RETHNRRQAAVFDAKAGFFASDQATPAKVMPSLRRIAEACRLDGSEDDGTVTAAAAGRVVDVGCGTGALVNFLKEAGVAERSVVGVDVSPKVITESSA 297
            R  HNR QAA FD  A FFA ++ATP  V+P LRRIA A  L  +     V   A+G VVDVGCG+GALV +L EAG++    VGVD+S K++   +A
Sbjct:   90 RGQHNRDQAAAFDQAAAFFAGEEATPDFVVPVLRRIA-AMTLASALSGIQVDTPASGVVVDVGCGSGALVPYLFEAGLSPGRYVGVDLSEKMLEACAA 186
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BLAST of mRNA_H-paniculata_contig1786.4277.1 vs. uniprot
Match: A0A7S2WP52_9STRA (Riboflavin kinase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WP52_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 8.170e-13
Identity = 46/98 (46.94%), Postives = 59/98 (60.20%), Query Frame = 1 
Query:    4 RETHNRRQAAVFDAKAGFFASDQATPAKVMPSLRRIAEACRLDGSEDDGTVTAAAAGRVVDVGCGTGALVNFLKEAGVAERSVVGVDVSPKVITESSA 297
            RE     Q   FD+   FFAS+ ATP +V+P L RIAEA   DGS             VVDVGCGTG LV F  +AGVA  SVVGVD++P ++ ++++
Sbjct:   87 REGFTSLQRRTFDSFVDFFASEDATPPEVVPRLERIAEAV-ADGSPS----------LVVDVGCGTGCLVPFYYDAGVAPESVVGVDLAPAMVDKAAS 173
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BLAST of mRNA_H-paniculata_contig1786.4277.1 vs. uniprot
Match: A0A8J6C5Q3_DIALT (Riboflavin kinase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C5Q3_DIALT)

HSP 1 Score: 70.1 bits (170), Expect = 7.320e-12
Identity = 50/100 (50.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:    1 ARETHNRRQAAVFDAKAGFFASDQATPAKVMPSLRRIAEACR-LDGSEDDGTVTAAAAGRVVDVGCGTGALVNFLKEAGVAERSVVGVDVSPKVITESSA 297
            AR  HN RQAAVFDA   +FAS  ATP  V P LRRIA A    DG+       AA   RV+DVGCG GALV FL+E   A   ++G+D+S K+    +A
Sbjct:   82 ARAAHNARQAAVFDAAVDWFASAAATPPDVEPRLRRIAAAALPADGAR------AAPPPRVLDVGCGAGALVPFLRERAPA-LDLLGLDLSAKMAAACAA 174
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BLAST of mRNA_H-paniculata_contig1786.4277.1 vs. uniprot
Match: A0A7S2XYQ3_9STRA (Riboflavin kinase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYQ3_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 6.590e-6
Identity = 35/92 (38.04%), Postives = 51/92 (55.43%), Query Frame = 1 
Query:   13 HNRRQAAVFDAKAGFFASDQATPAKVMPSLRRIAEACRLDGSEDDGTVTAAAAGRVVDVGCGTGALVNFL-KEAGV-AERSVVGVDVSPKVI 282
            HN+ Q   FD    FF+S QA P  V+P L +I+ +  ++  +            V+DVGCGTGAL+ FL K  GV  E  +VG+D+S  ++
Sbjct:  158 HNQMQREAFDNAVNFFSSKQAVPRAVVPRLEKISSSVTVEKGQ-----------YVLDVGCGTGALLPFLAKNTGVYGEDKLVGLDLSSGMV 238
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1786.4277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JR35_9PHAE2.200e-2567.02Riboflavin kinase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A7S1U2N2_9STRA7.440e-1658.82Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7R9Y8N6_9STRA1.960e-1551.02Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S2WP52_9STRA8.170e-1346.94Riboflavin kinase n=1 Tax=Rhizochromulina marina T... [more]
A0A8J6C5Q3_DIALT7.320e-1250.00Riboflavin kinase n=1 Tax=Diacronema lutheri TaxID... [more]
A0A7S2XYQ3_9STRA6.590e-638.04Riboflavin kinase n=1 Tax=Fibrocapsa japonica TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1786contigH-paniculata_contig1786:22851..24078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue2.1e-22
Seed eggNOG ortholog2880.D8LGN9
Preferred nameRFK
KEGG rclassRC00002,RC00017
KEGG koko:K00861
KEGG ReactionR00549
KEGG Pathwayko00740,ko01100,ko01110,map00740,map01100,map01110
KEGG ModuleM00125
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005829,GO:0006139,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006771,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0008150,GO:0008152,GO:0008219,GO:0008270,GO:0008531,GO:0009058,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009124,GO:0009156,GO:0009161,GO:0009165,GO:0009231,GO:0009259,GO:0009260,GO:0009398,GO:0009893,GO:0009987,GO:0012501,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017144,GO:0018130,GO:0019222,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0033860,GO:0033864,GO:0034641,GO:0034654,GO:0042364,GO:0042726,GO:0042727,GO:0043085,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046390,GO:0046444,GO:0046483,GO:0046872,GO:0046914,GO:0048518,GO:0050789,GO:0050790,GO:0051186,GO:0051188,GO:0051341,GO:0051353,GO:0055086,GO:0065007,GO:0065009,GO:0071704,GO:0072593,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.riboflavin kinase activity
EggNOG OGsCOG0196@1,KOG3110@2759
Ec32 ortholog descriptionRiboflavin kinase domain, bacterial/eukaryotic
Ec32 orthologEc-10_002950.1
EC2.7.1.26
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929394.116064-CDS-H-paniculata_contig1786:22850..229371622929394.116064-CDS-H-paniculata_contig1786:22850..22937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1786 22851..22937 +
1691480843.0039573-CDS-H-paniculata_contig1786:22850..229371691480843.0039573-CDS-H-paniculata_contig1786:22850..22937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1786 22851..22937 +
1622929394.1314788-CDS-H-paniculata_contig1786:23856..240781622929394.1314788-CDS-H-paniculata_contig1786:23856..24078Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1786 23857..24078 +
1691480843.0241134-CDS-H-paniculata_contig1786:23856..240781691480843.0241134-CDS-H-paniculata_contig1786:23856..24078Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1786 23857..24078 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1786.4277.1prot_H-paniculata_contig1786.4277.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1786 22851..24078 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1786.4277.1

>prot_H-paniculata_contig1786.4277.1 ID=prot_H-paniculata_contig1786.4277.1|Name=mRNA_H-paniculata_contig1786.4277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
ARETHNRRQAAVFDAKAGFFASDQATPAKVMPSLRRIAEACRLDGSEDDG
TVTAAAAGRVVDVGCGTGALVNFLKEAGVAERSVVGVDVSPKVITESSAW
RS*
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mRNA from alignment at H-paniculata_contig1786:22851..24078+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1786.4277.1 ID=mRNA_H-paniculata_contig1786.4277.1|Name=mRNA_H-paniculata_contig1786.4277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1228bp|location=Sequence derived from alignment at H-paniculata_contig1786:22851..24078+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCAGAGAGACGCACAACCGACGACAAGCAGCGGTGTTCGATGCTAAGGC
TGGATTCTTCGCCTCCGACCAAGCAACGCCTGCCAAGGTATGTACAGCGA
TCACTTCGTTTTTTGTTTTTTGTTCATCCCTACGAGACCAAAGAGAGAAA
ACCGTTGCTAGTTCTTATACCTGACTGCCTCACCTCGGCTATTTCGTAGT
TGAATCACTTCGTATCCCGTAGTTGACGATGGCGGTGAACAAACACCCCA
AATCGGCGGTAAAAAAAAAAAAGGCACACTATAATATACCCCAATCCAAT
CTGTTAGAAGTGAGAGCCTAATTAATCATCACTGAACCGAAAGAGCCCCG
TCTCTAAACAAAAATGTATCTGGATTTGCACAAATTCCGTCTAATGGTAA
CACTGTTGGGGGATGACTATAGCGCCGTAGTTTTCGAGAAAAGTCAGCTT
CGTGGAACTTTTTTCTTGGGGGAGGGGGGGGGCTAGCGGGACACCCCCCC
CCCCCTCGCGATGCAAAACGTCGCAGCATCCAAACGCCATCTCCTCTACA
CTCTCTCGCGTCTGCTTCACCGTGGACCTATACAATCAGGTCTTCGCTCG
CAATTTCGTATTTTAGAGTACATTCGGTAACTTCCAATGCAGACAGCCAT
GACCTTGTACACGTATTATAGTACATGCTCTTCGGATCGCACGAGTTTTT
CCTAAGGTGAACATCGTGTGGAGAAGATCTCACCCGTCTTAATTGCTCTC
ATCTGCCCCCCCCCCCTCCCCCCCCCTCCTTGGCTAATGGTTGGTAGTGC
CTCAGGGGGAAGGAAAACATTGGTACATAGCTTTCTAACGCCTTACGCTC
CGGGGATCGATGGTCTGTTCGTAAGGCGCGCACACCCTTTTGCTTCTTTG
GTCAAGTGGTTTATTAGTAGCCGAAGTACGCAAAACATGCGTCCTACAGT
ATACTTTGCCTGTGTCCGTTCATGCCACAATTGATCCTGCGGCGCCGGAC
GACCAGGTTATGCCCTCCTTGAGGCGCATCGCTGAGGCTTGTCGCCTTGA
CGGGAGTGAGGATGATGGCACCGTCACCGCCGCCGCGGCAGGGCGTGTCG
TCGATGTGGGCTGCGGCACTGGCGCTCTCGTGAATTTCTTGAAGGAGGCG
GGAGTGGCAGAGAGGAGCGTTGTGGGAGTAGATGTGTCTCCCAAGGTAAT
TACTGAATCGAGTGCGTGGCGTTCCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1786:22851..24078+

>mRNA_H-paniculata_contig1786.4277.1 ID=mRNA_H-paniculata_contig1786.4277.1|Name=mRNA_H-paniculata_contig1786.4277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig1786:22851..24078+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCAGAGAGACGCACAACCGACGACAAGCAGCGGTGTTCGATGCTAAGGC
TGGATTCTTCGCCTCCGACCAAGCAACGCCTGCCAAGGCCAGAGAGACGC
ACAACCGACGACAAGCAGCGGTGTTCGATGCTAAGGCTGGATTCTTCGCC
TCCGACCAAGCAACGCCTGCCAAGGTTATGCCCTCCTTGAGGCGCATCGC
TGAGGCTTGTCGCCTTGACGGGAGTGAGGATGATGGCACCGTCACCGCCG
CCGCGGCAGGGCGTGTCGTCGATGTGGGCTGCGGCACTGGCGCTCTCGTG
AATTTCTTGAAGGAGGCGGGAGTGGCAGAGAGGAGCGTTGTGGGAGTAGA
TGTGTCTCCCAAGGTAATTACTGAATCGAGTGCGTGGCGTTCCTAAGTTA
TGCCCTCCTTGAGGCGCATCGCTGAGGCTTGTCGCCTTGACGGGAGTGAG
GATGATGGCACCGTCACCGCCGCCGCGGCAGGGCGTGTCGTCGATGTGGG
CTGCGGCACTGGCGCTCTCGTGAATTTCTTGAAGGAGGCGGGAGTGGCAG
AGAGGAGCGTTGTGGGAGTAGATGTGTCTCCCAAGGTAATTACTGAATCG
AGTGCGTGGCGTTCCTAA
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