mRNA_H-paniculata_contig17858.4275.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17858.4275.1
Unique NamemRNA_H-paniculata_contig17858.4275.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17858.4275.1 vs. uniprot
Match: D8LSR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSR7_ECTSI)

HSP 1 Score: 246 bits (629), Expect = 8.260e-78
Identity = 120/162 (74.07%), Postives = 135/162 (83.33%), Query Frame = 1 
Query:    1 YVIHTDIKSDPSLIEQISAHIRPLPNVYEEDYPSTSQEEMRRWLKQKPDGTNFIKCWPIEKHDFFGQTEGHANRVKDVHVDDFAGTVREFVTTSGRRGSQERGASGYQFYKSLQQTMLSRDLSEFATRSSEARRLLLYMATSKAPDELYFPTLTMLDERYAS 486
            YVIH DIKSD +L++ IS HI+ LPNVYEEDYPS SQ EMRRWLK + DGTNFIKCWPIE HDFFGQ E H  RV+DV+VDDF G V+E+ T SG  GSQER  + Y+F+KSLQQTMLSR L+E+A  SSEARRLLLYMATSKAPDELYFPTLT LDERY+S
Sbjct:  101 YVIHVDIKSDKALLDAISHHIKDLPNVYEEDYPSASQAEMRRWLKDQKDGTNFIKCWPIEGHDFFGQMERHEQRVQDVNVDDFMGGVKEYRTMSGNTGSQERPKTDYKFFKSLQQTMLSRQLTEYAIHSSEARRLLLYMATSKAPDELYFPTLTQLDERYSS 262
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BLAST of mRNA_H-paniculata_contig17858.4275.1 vs. uniprot
Match: A0A6H5JPB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB4_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 5.030e-64
Identity = 100/134 (74.63%), Postives = 113/134 (84.33%), Query Frame = 1 
Query:   85 EEDYPSTSQEEMRRWLKQKPDGTNFIKCWPIEKHDFFGQTEGHANRVKDVHVDDFAGTVREFVTTSGRRGSQERGASGYQFYKSLQQTMLSRDLSEFATRSSEARRLLLYMATSKAPDELYFPTLTMLDERYAS 486
            +EDYPS SQ EMRRWLK + DGTNFIKCWPIE HDFFGQ E H  RV+DV+VDDF G V+E+ T SG+ GSQER  + Y+F+KSLQQTMLSR L+E+A  SSEARRLLLYMATSKAPDELYFPTLT LDERY+S
Sbjct:   14 QEDYPSASQAEMRRWLKDQKDGTNFIKCWPIEGHDFFGQMERHEQRVQDVNVDDFMGGVKEYRTVSGKTGSQERPKTDYKFFKSLQQTMLSRQLTEYAIHSSEARRLLLYMATSKAPDELYFPTLTQLDERYSS 147
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BLAST of mRNA_H-paniculata_contig17858.4275.1 vs. uniprot
Match: A0A7S2UWP2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWP2_9STRA)

HSP 1 Score: 125 bits (315), Expect = 3.580e-31
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = 1 
Query:   76 NVYEEDYPSTSQEEMRRWLKQKPDGTNFIKCWPIEKHDFFGQTEGHANRVKDVHVDDFAGTVREFVTTSGRRGSQERGASGYQFYKSLQQTMLSRDLSEFATRSSEARRLLLYMATSKAPDELYFPTLTMLDERYASK 489
            N+  EDYP  +Q +M R L +   GTNFIKCWP+E H+FFGQ E H  RV+++  D F G   +      RR  +     G +FYKSLQQT+LSR+  E++  + EARR+LLY+A SKAPDEL+FPT    +   A+K
Sbjct:  171 NLGHEDYPLATQNDMSRLLGEYAPGTNFIKCWPVEGHNFFGQWEHHEKRVEELTFDTFTGEAHDVHI---RR--EHMPTLGMKFYKSLQQTVLSREFCEYSCYALEARRILLYLANSKAPDELFFPTALQTNADMAAK 303
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BLAST of mRNA_H-paniculata_contig17858.4275.1 vs. uniprot
Match: A0A835YXC2_9STRA (Core-2/I-branching enzyme-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXC2_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.220e-30
Identity = 64/137 (46.72%), Postives = 85/137 (62.04%), Query Frame = 1 
Query:   76 NVYEEDYPSTSQEEMRRWLKQKPDGTNFIKCWPIEKHDFFGQTEGHANRVKDVHVDDFAGTVREFVTTSGRRGSQERGASGYQFYKSLQQTMLSRDLSEFATRSSEARRLLLYMATSKAPDELYFPTLTMLDERYAS 486
            N+  EDYP+ S  E+R+ L   P G N++KCW + +HDFFGQ E H  + + V VDDFAG V     T   + +    A G+QFYKSLQQ ++SRD    A  S++ARRLLL  A+  APDE++FPTL    + Y S
Sbjct:  137 NIGHEDYPNASPREIRKALTAMPAGRNYMKCWHLAEHDFFGQIERHGPKARKVVVDDFAGMVHP---TGFSKPADSMRALGFQFYKSLQQMVISRDFCRHAVYSADARRLLLVTASLLAPDEVFFPTLLQQSDSYRS 270
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BLAST of mRNA_H-paniculata_contig17858.4275.1 vs. uniprot
Match: A0A4D9D7W1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7W1_9STRA)

HSP 1 Score: 117 bits (293), Expect = 8.790e-28
Identity = 67/137 (48.91%), Postives = 80/137 (58.39%), Query Frame = 1 
Query:   76 NVYEEDYPSTSQEEMRRWLKQK-PDGTNFIKCWPIEKHDFFGQTEGHANRVKDVHVDDFAGTVREFVTTSGRRGSQERGASGYQFYKSLQQTMLSRDLSEFATRSSEARRLLLYMATSKAPDELYFPTLTMLDERYA 483
            N+ +EDYP  S   ++ +L    P  TNFI CW +  HDFFGQ E H  RV  V VD F G  RE       RG        Y FYKSLQQT+LSR   E A  + E+RRLLLY+ATS+APDE++FPTL  L    A
Sbjct:  174 NIGQEDYPLQSPAAIQEYLAHAVPPATNFIYCWDLRGHDFFGQWEHHEGRVSKVFVDMFDGRSREV------RGFPRSPPKEYTFYKSLQQTVLSRVFVESAVHAPESRRLLLYLATSEAPDEIFFPTLLHLPSNRA 304
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BLAST of mRNA_H-paniculata_contig17858.4275.1 vs. uniprot
Match: A0A6T5PXW9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5PXW9_HETAK)

HSP 1 Score: 114 bits (284), Expect = 9.650e-27
Identity = 62/132 (46.97%), Postives = 80/132 (60.61%), Query Frame = 1 
Query:   76 NVYEEDYPSTSQEEMRRWLKQKPDGT----NFIKCWPIEKHDFFGQTEGHANRVKDVHVDDFAGTVREFVTTSGRRGSQERGASGYQFYKSLQQTMLSRDLSEFATRSSEARRLLLYMATSKAPDELYFPTL 459
            N+  EDYP+  Q +M  WL +    T    NFIKCW I  HDFFGQ E H  RV+ V +D+F G   +   T  R   +     G +FYKSLQQT L RD  ++A    E+RR+LL+MA SKAPDE++FPT+
Sbjct:  150 NIGHEDYPAMGQGQMSAWLGRHEVETGGPVNFIKCWDILGHDFFGQWEHHERRVEVVTIDNFVGGTEDTSYTRPRDDLR-----GIKFYKSLQQTTLHRDFVDYAVYGIESRRILLFMANSKAPDEIFFPTV 276
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BLAST of mRNA_H-paniculata_contig17858.4275.1 vs. uniprot
Match: A0A7S1U3N2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3N2_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 3.070e-21
Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:   76 NVYEEDYPSTSQEEMRRWLKQKPDGTNFIKCWPIEKHDFFGQTEGHANRVKDVHVDDFAGTVREFVTTSGRRGSQERGASGYQFYKSLQQ 345
            N+  EDYP    EEM+ WL   P  TNFIKCWPI +H+FFGQ E H +RV+ +HVDDFAG V + +T   R   +E     ++FYK+LQQ
Sbjct:   97 NLGHEDYPVVGMEEMQAWLGAHPRETNFIKCWPIGRHNFFGQVESHGHRVRQIHVDDFAGDVHD-ITDVERPKFKE-----FKFYKALQQ 180
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BLAST of mRNA_H-paniculata_contig17858.4275.1 vs. uniprot
Match: W7UCA6_9STRA (Core-2 i-branching enzyme n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UCA6_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.970e-8
Identity = 31/65 (47.69%), Postives = 37/65 (56.92%), Query Frame = 1 
Query:   76 NVYEEDYPSTSQEEMRRWLKQK-PDGTNFIKCWPIEKHDFFGQTEGHANRVKDVHVDDFAGTVRE 267
            N+ +EDYP  S   ++ +L    P  TNFI CW +  HDFFGQ E H  RV  V VD F G  RE
Sbjct:  174 NIGQEDYPLQSPAAIQEYLAHAVPPATNFIYCWDLRGHDFFGQWEHHEGRVSKVFVDMFDGRSRE 238
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17858.4275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LSR7_ECTSI8.260e-7874.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPB4_9PHAE5.030e-6474.63Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S2UWP2_9STRA3.580e-3147.83Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YXC2_9STRA1.220e-3046.72Core-2/I-branching enzyme-domain-containing protei... [more]
A0A4D9D7W1_9STRA8.790e-2848.91Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A6T5PXW9_HETAK9.650e-2746.97Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1U3N2_9STRA3.070e-2151.11Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
W7UCA6_9STRA2.970e-847.69Core-2 i-branching enzyme n=1 Tax=Nannochloropsis ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17858contigH-paniculata_contig17858:265..2629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size492
Cds size492
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929393.9146652-CDS-H-paniculata_contig17858:264..6691622929393.9146652-CDS-H-paniculata_contig17858:264..669Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17858 265..669 -
1691480842.9167004-CDS-H-paniculata_contig17858:264..6691691480842.9167004-CDS-H-paniculata_contig17858:264..669Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17858 265..669 -
1622929393.932874-CDS-H-paniculata_contig17858:2542..26291622929393.932874-CDS-H-paniculata_contig17858:2542..2629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17858 2543..2629 -
1691480842.9257584-CDS-H-paniculata_contig17858:2542..26291691480842.9257584-CDS-H-paniculata_contig17858:2542..2629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17858 2543..2629 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17858.4275.1prot_H-paniculata_contig17858.4275.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17858 265..2629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17858.4275.1

>prot_H-paniculata_contig17858.4275.1 ID=prot_H-paniculata_contig17858.4275.1|Name=mRNA_H-paniculata_contig17858.4275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp
YVIHTDIKSDPSLIEQISAHIRPLPNVYEEDYPSTSQEEMRRWLKQKPDG
TNFIKCWPIEKHDFFGQTEGHANRVKDVHVDDFAGTVREFVTTSGRRGSQ
ERGASGYQFYKSLQQTMLSRDLSEFATRSSEARRLLLYMATSKAPDELYF
PTLTMLDERYASK*
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mRNA from alignment at H-paniculata_contig17858:265..2629-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17858.4275.1 ID=mRNA_H-paniculata_contig17858.4275.1|Name=mRNA_H-paniculata_contig17858.4275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2365bp|location=Sequence derived from alignment at H-paniculata_contig17858:265..2629- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGTGATCCACACAGACATCAAGTCAGATCCGTCCCTCATCGAGCAAAT
TTCGGCTCACATCAGGCCCTTACCCAATGTTTACGAGGTAAGGAGGTGGT
GATGGTGATTGTAAAAATAGTTGTAATTATATTTATATTTACATTTATAT
TTTATATAATGAGAATTAGAATTATAACACCGATTCCGATGCCACTGGAG
TTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTCGATATTGACTTGG
TTTTACCTAGGGGAATTAAAAAGCAGGTTCAAATAGTAACGACAATGAGA
AGGTTTTGAGCGGTACAGCCAATATTTTGATAATAGACCTTTTTGTGTGT
GTGTATGTTTTTGATGCTCTGTGTTTTCAGCAACCCTGTTATATTATACA
TTAGTAGCACTGAACTTGGTGAGAATTATTTCTGTTTCAAAGCGACGGGT
TTTACTCAAAAACACACGCATACGGTTCGTGTGCCGCGTTTAATTTATAT
CATCCTCCGTTCTGCCTGCCAGATTCCTTCCGTTAGCGTTAGCTGGGCTG
GAATCACCGTGGTGGAGCGCACTCTGGCGCTGATGGATAAAGCCTTGGAG
GTAAATGCTTCCTGGCGGTACTTCGTTAACATCGGACATGTGAGTGGCGG
GGTAATGTACCTAGTTGACCTGTAGTCATACCGTAGTTGACCCGCAGCTG
TATCGTAGTTGTACCGCAATTGACAAGGTATTTTATCACTTGGTCGGGAT
CATTTTTTGCCTCTTGAATAAATACAAGGATATTGAAAGCTTGTTGGACG
AAAAATGATTTTAAGATGTGTATTTCCTAGAGGTTGAGGCATCAATAAGC
ACGTCTATAATATTGTCCCCTGGACCATCTAATCTACTACATCCAACTGT
TCCAAATAGCAGCCGTAAAAAAAATTAATAGGGAAGCCAGGCCACACTTT
ATTTTTTATTCTTTGTGGTCGCCAATTCTGTAAGTCAGGCAAAAAAAAAA
AAAAAAAGTGACGTCGCGAAGGCTCCAAATAGTTGTATTTTTCCGGGCGG
TGCCACTGTTTCTACCTCGTTTCCTCCCAAATTTCCGGGCTTATCACACC
GAAAGTCGAAAATTGAGTCGTGGATGAGATTTCGTTCGCAAATGTCATTA
GAGCTCGAGATCGACAGGATGTTGGATGTCTGCGCATTTTGGCTCTTGAC
AAAATGGGCGTTGAAAGTGCTGCATCCCGCGGATAAACACGAATGCTTGG
CGTATTTACCAAGAAAATTAAAAAATATTCGCCTGGGTTTCATAATGAGC
TGGTGTATTCTATGTGCCCCGGACCATTTGCGACTGCTAATAATACTCGT
ACATGGAATGGACAGGGGTGGGTACTTTATTTCATGTATATATTCATTGT
GAACTTCGGGCGAACACTCCCTCATTTTCGTGGCGAATACGGTAATTAGT
CGTGTTTATCCTGGGGATGAAGTGTTGAAATGTTTTCGCAGGGAGGGGTG
GGGGAGATATACAGGATAAACTCCCGTATACTCGAAAACAAGTTGGATGT
TCGGTAGTATTAATGTTTTACTAGGATAATTGAGCATCATCTTGTACAAT
ATTCGATGTTTTGACAACATTTTGGGACATTAGTTCTCAGCCATATCGAT
GTTGGAGTAACACTGTTTCGTCGTGATGGTCTTGCTTTGAGTAGACACAA
CTTGCTCTGGCCAACGCGTTAAATACGTCAATCTCCAGAGCAGAGGTTGC
AATTGATGGTGATGATCTTTCAATCGCAGTTTTATGTTGTTACTATCTGT
TTTATTATTAACATACAAAAAAGACGAGAGAATCGTTAAAAATGCCGAAA
GAAATGATACGGTGGCCCCCCGCGGTTTTTCATCGCACCTACAAAATACA
ATGTACAACACAAAACAGCGTACAATCGCCCCCATTATTACTCGACCTAC
ACTGCCGCAGGAGGATTACCCGTCGACATCCCAAGAGGAGATGCGACGGT
GGCTCAAGCAAAAGCCGGACGGTACTAACTTCATCAAGTGCTGGCCCATC
GAGAAACACGACTTCTTCGGTCAGACAGAGGGCCATGCCAACAGGGTAAA
GGACGTGCACGTGGACGATTTCGCGGGAACGGTACGCGAGTTCGTGACCA
CCTCCGGAAGGCGGGGGTCGCAGGAGCGAGGAGCGTCAGGGTACCAATTC
TATAAATCGCTGCAGCAGACGATGCTGTCCAGAGATCTATCGGAATTCGC
GACTCGGTCGTCGGAGGCCCGGCGGCTGCTGCTGTACATGGCCACCTCGA
AGGCCCCTGACGAGCTGTACTTTCCCACCCTCACGATGCTCGACGAGCGC
TACGCCTCCAAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig17858:265..2629-

>mRNA_H-paniculata_contig17858.4275.1 ID=mRNA_H-paniculata_contig17858.4275.1|Name=mRNA_H-paniculata_contig17858.4275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at H-paniculata_contig17858:265..2629- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGTGATCCACACAGACATCAAGTCAGATCCGTCCCTCATCGAGCAAAT
TTCGGCTCACATCAGGCCCTTACCCAATGTTTACGAGTATGTGATCCACA
CAGACATCAAGTCAGATCCGTCCCTCATCGAGCAAATTTCGGCTCACATC
AGGCCCTTACCCAATGTTTACGAGGAGGATTACCCGTCGACATCCCAAGA
GGAGATGCGACGGTGGCTCAAGCAAAAGCCGGACGGTACTAACTTCATCA
AGTGCTGGCCCATCGAGAAACACGACTTCTTCGGTCAGACAGAGGGCCAT
GCCAACAGGGTAAAGGACGTGCACGTGGACGATTTCGCGGGAACGGTACG
CGAGTTCGTGACCACCTCCGGAAGGCGGGGGTCGCAGGAGCGAGGAGCGT
CAGGGTACCAATTCTATAAATCGCTGCAGCAGACGATGCTGTCCAGAGAT
CTATCGGAATTCGCGACTCGGTCGTCGGAGGCCCGGCGGCTGCTGCTGTA
CATGGCCACCTCGAAGGCCCCTGACGAGCTGTACTTTCCCACCCTCACGA
TGCTCGACGAGCGCTACGCCTCCAAGTAAGAGGATTACCCGTCGACATCC
CAAGAGGAGATGCGACGGTGGCTCAAGCAAAAGCCGGACGGTACTAACTT
CATCAAGTGCTGGCCCATCGAGAAACACGACTTCTTCGGTCAGACAGAGG
GCCATGCCAACAGGGTAAAGGACGTGCACGTGGACGATTTCGCGGGAACG
GTACGCGAGTTCGTGACCACCTCCGGAAGGCGGGGGTCGCAGGAGCGAGG
AGCGTCAGGGTACCAATTCTATAAATCGCTGCAGCAGACGATGCTGTCCA
GAGATCTATCGGAATTCGCGACTCGGTCGTCGGAGGCCCGGCGGCTGCTG
CTGTACATGGCCACCTCGAAGGCCCCTGACGAGCTGTACTTTCCCACCCT
CACGATGCTCGACGAGCGCTACGCCTCCAAGTAA
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