mRNA_H-paniculata_contig17850.4274.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17850.4274.1
Unique NamemRNA_H-paniculata_contig17850.4274.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17850.4274.1 vs. uniprot
Match: D7FHP2_ECTSI (40S ribosomal protein SA n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHP2_ECTSI)

HSP 1 Score: 373 bits (957), Expect = 1.440e-121
Identity = 207/247 (83.81%), Postives = 214/247 (86.64%), Query Frame = 1 
Query:    1 QDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRAVPWDVPVDLFFYREPEELEKAEEAQAPFQEPAAVAAPGWGAEPMVG-AAPTPMEGFQPAAPVDPTA---VPMDSYQAPPAADALGGGWDAAPGG---QEVVVDQAPQEAQLVEQVMPVDAGVPAAA 720
            QDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDR V WDVPVDLFFYREPEELEKAEEAQAPFQEPAA AA GWGA+PM G AAPTPMEGF   A VDP A   VP++ YQAPP A A+GGGWDAAP     Q + V+Q     Q V + MPVDAGVP AA
Sbjct:   74 QDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRTVAWDVPVDLFFYREPEELEKAEEAQAPFQEPAAAAASGWGADPMAGGAAPTPMEGF---AAVDPAAAAPVPVE-YQAPPQAAAMGGGWDAAPATGAEQGMPVEQV----QPVAEAMPVDAGVPPAA 312
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BLAST of mRNA_H-paniculata_contig17850.4274.1 vs. uniprot
Match: A0A7S4DAK2_HETAK (40S ribosomal protein SA n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAK2_HETAK)

HSP 1 Score: 276 bits (707), Expect = 1.990e-84
Identity = 148/196 (75.51%), Postives = 156/196 (79.59%), Query Frame = 1 
Query:    1 QDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRAVPWDVPVDLFFYREPEELEKAEEAQAPFQEPAAVAAPGWGAEPMVGAAPTPMEGFQPAAPVDPTAVPMDSYQAPP 588
            +DVVAISARPYGQRAVLKFAQYTG  SIAGRFTPGTFTNQITKQFREPRLL+ITDPR D+QAVKEASYVNVPVIAFCDSDSPL NVDVAIP+NNKGKLSIGLLYWLLAREVLRMRGTI R  PWDVPVDLFFYR+PEELEKA+EAQA   E    A  GWGA P   A    M      AP          ++APP
Sbjct:   98 EDVVAISARPYGQRAVLKFAQYTGANSIAGRFTPGTFTNQITKQFREPRLLVITDPRTDSQAVKEASYVNVPVIAFCDSDSPLPNVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTISRDAPWDVPVDLFFYRDPEELEKADEAQAAAYEEQVPA--GWGAAPEAAAPAAEMAPMDYVAPDAXXXXAAAGFEAPP 291
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BLAST of mRNA_H-paniculata_contig17850.4274.1 vs. uniprot
Match: F0Y9V2_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9V2_AURAN)

HSP 1 Score: 267 bits (682), Expect = 2.380e-82
Identity = 128/147 (87.07%), Postives = 140/147 (95.24%), Query Frame = 1 
Query:    1 QDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRAVPWDVPVDLFFYREPEELEKAEEAQA 441
            QD++AISARPYGQRAVLKFAQYTG  SIAGRFTPGTFTNQITKQF+EPR+L+ITDPR D+QAVKEASYVN+PVIAFCDSDSP Q+VDVAIPSNNKGKLSIGLLYWLLARE+LRMRGT+ R  PWDVPVDLFFYR+PEELEKA+EAQA
Sbjct:   66 QDIIAISARPYGQRAVLKFAQYTGAASIAGRFTPGTFTNQITKQFKEPRILVITDPRTDSQAVKEASYVNLPVIAFCDSDSPCQHVDVAIPSNNKGKLSIGLLYWLLAREMLRMRGTVARHAPWDVPVDLFFYRDPEELEKADEAQA 212
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BLAST of mRNA_H-paniculata_contig17850.4274.1 vs. uniprot
Match: A0A8J2SYU6_9STRA (40S ribosomal protein SA n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SYU6_9STRA)

HSP 1 Score: 271 bits (694), Expect = 3.670e-82
Identity = 132/147 (89.80%), Postives = 140/147 (95.24%), Query Frame = 1 
Query:    1 QDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRAVPWDVPVDLFFYREPEELEKAEEAQA 441
            QDV+AISARPYGQRAVLKFAQYTG  SIAGRFTPGTFTNQITKQFREPR+L+ITDPR D+QAV EASYVN+PVIAFCDSDSPLQ+VDVAIPSNNKGKLSIGLLYWLLAREVLRMRGT+ R  PWDVPVDLFFYR+PEELEKAEEAQA
Sbjct:  143 QDVIAISARPYGQRAVLKFAQYTGAASIAGRFTPGTFTNQITKQFREPRILVITDPRTDSQAVAEASYVNLPVIAFCDSDSPLQHVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTVSRLAPWDVPVDLFFYRDPEELEKAEEAQA 289
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BLAST of mRNA_H-paniculata_contig17850.4274.1 vs. uniprot
Match: A0A836CJ71_9STRA (40S ribosomal protein SA n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ71_9STRA)

HSP 1 Score: 270 bits (690), Expect = 3.740e-82
Identity = 140/169 (82.84%), Postives = 149/169 (88.17%), Query Frame = 1 
Query:    1 QDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRAVPWDVPVDLFFYREPEELEKAEEAQAPFQEPAAVAAPGWGAEPMVGAA 507
            QDV+AISARPYGQRAVLKFAQYTG  SIAGRFTPGTFTNQITKQFREPRLLIITDPR DAQAVKE+SYVNVPVIAFCDSDSPL  VDVAIP+NNKGKLSIGLLYW+LAREVLR+RGT+ R  PWDVPVDLFF+REPEELEK E  Q  F+EPAA  A GW A   +GAA
Sbjct:   74 QDVIAISARPYGQRAVLKFAQYTGAASIAGRFTPGTFTNQITKQFREPRLLIITDPRTDAQAVKESSYVNVPVIAFCDSDSPLNYVDVAIPANNKGKLSIGLLYWMLAREVLRLRGTVPRDAPWDVPVDLFFHREPEELEKTEAEQ--FEEPAAPTA-GWDATAGMGAA 239
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BLAST of mRNA_H-paniculata_contig17850.4274.1 vs. uniprot
Match: A0A1V9ZU98_9STRA (40S ribosomal protein SA n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZU98_9STRA)

HSP 1 Score: 264 bits (674), Expect = 2.680e-80
Identity = 128/145 (88.28%), Postives = 139/145 (95.86%), Query Frame = 1 
Query:    4 DVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRAVPWDVPVDLFFYREPEELEKAEEAQ 438
            DV+AISARPYGQRAVLKFAQYTGC +IAGRFTPGTFTNQITKQFREPRLLIITDPR DAQ V+E++YVNVPVIAFCDSDSPL+ VDVAIP+NNKGKLSIGLLYWLL+REVLR+RGTI RA+PWDV VDLFFYR+PEELEKAEEAQ
Sbjct:   67 DVIAISARPYGQRAVLKFAQYTGCQAIAGRFTPGTFTNQITKQFREPRLLIITDPRTDAQPVRESAYVNVPVIAFCDSDSPLRYVDVAIPANNKGKLSIGLLYWLLSREVLRLRGTISRALPWDVAVDLFFYRDPEELEKAEEAQ 211
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BLAST of mRNA_H-paniculata_contig17850.4274.1 vs. uniprot
Match: K3WLH6_GLOUD (40S ribosomal protein SA n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLH6_GLOUD)

HSP 1 Score: 265 bits (676), Expect = 3.330e-80
Identity = 136/169 (80.47%), Postives = 149/169 (88.17%), Query Frame = 1 
Query:    4 DVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRAVPWDVPVDLFFYREPEELEKAEEAQAPFQEPAAVAAPGWGAEPMVGAAP 510
            DV+AISARPYGQRAVLKFAQYTG  +IAGRFTPGTFTNQITKQFREPRLLIITDPR D+QAV+E+++VNVPVIAFCDSDSPLQ VDVAIPSNNKGKLSIGLLYWLLAREVLR+RGTI RA+PWDV VDLF YR+PEEL+KAEEAQ+   + A VA  GWG    V A P
Sbjct:   94 DVIAISARPYGQRAVLKFAQYTGAAAIAGRFTPGTFTNQITKQFREPRLLIITDPRTDSQAVRESAFVNVPVIAFCDSDSPLQYVDVAIPSNNKGKLSIGLLYWLLAREVLRLRGTISRALPWDVAVDLFLYRDPEELKKAEEAQSGAADEA-VARAGWGETAEVAAEP 261
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BLAST of mRNA_H-paniculata_contig17850.4274.1 vs. uniprot
Match: A0A5D6XMB2_9STRA (40S ribosomal protein SA n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XMB2_9STRA)

HSP 1 Score: 263 bits (671), Expect = 7.220e-80
Identity = 133/160 (83.12%), Postives = 145/160 (90.62%), Query Frame = 1 
Query:    4 DVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRAVPWDVPVDLFFYREPEELEKAEEAQAPFQEPAAVAAPGWG 483
            DV+AISARPYGQRAVLKFAQYTG  SIAGRFTPGTFTNQITKQFREPRLLIITDPR D+Q+V+E+S+VNVPVIAFCDSDSPLQ VDVAIP+NNKGKLSIGLLYWLLAREVLR+RGTI RA+PWDV VDLF YR+PEEL+KAEEAQ+   E A   A GWG
Sbjct:   67 DVIAISARPYGQRAVLKFAQYTGSSSIAGRFTPGTFTNQITKQFREPRLLIITDPRTDSQSVRESSFVNVPVIAFCDSDSPLQYVDVAIPANNKGKLSIGLLYWLLAREVLRLRGTISRALPWDVAVDLFLYRDPEELKKAEEAQSGAAEEAQARA-GWG 225
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BLAST of mRNA_H-paniculata_contig17850.4274.1 vs. uniprot
Match: D0MUE8_PHYIT (40S ribosomal protein SA n=15 Tax=Peronosporaceae TaxID=4777 RepID=D0MUE8_PHYIT)

HSP 1 Score: 262 bits (669), Expect = 1.680e-79
Identity = 131/161 (81.37%), Postives = 145/161 (90.06%), Query Frame = 1 
Query:    1 QDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRAVPWDVPVDLFFYREPEELEKAEEAQAPFQEPAAVAAPGWG 483
            +DV+AISARPYGQRAVLKFAQ+TGC +IA RFTPGTFTNQITKQFREPRLL+ITDPR D+QAV+E+S+VNVPVIAFCDSDSPLQ VDVAIP+NNKGKLSIGLLYWLLAREVLR+RGTI R +PWDV VDLF YR+PEEL+KAEEAQA   E A   A GWG
Sbjct:   66 EDVIAISARPYGQRAVLKFAQHTGCQAIASRFTPGTFTNQITKQFREPRLLLITDPRTDSQAVRESSFVNVPVIAFCDSDSPLQFVDVAIPANNKGKLSIGLLYWLLAREVLRLRGTISRTLPWDVAVDLFLYRDPEELKKAEEAQATAAEEAQTRA-GWG 225
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BLAST of mRNA_H-paniculata_contig17850.4274.1 vs. uniprot
Match: A0A0P1B4R0_PLAHL (40S ribosomal protein SA n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B4R0_PLAHL)

HSP 1 Score: 261 bits (668), Expect = 2.440e-79
Identity = 135/174 (77.59%), Postives = 152/174 (87.36%), Query Frame = 1 
Query:    1 QDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRAVPWDVPVDLFFYREPEELEKAEEAQAPFQEPAAVAAPGWGAEPMVGAAPTPME 522
            +DV+AISARPYGQRAVLKFAQ+TGC +IA RFTPGTFTNQITKQFREPRLLIITDPR D+QAV+E+S+VNVPVIA CDSDSPLQ VDVAIP+NNKGKLSIGLLYWLLAREVLR+RGTI RA+PWDV VDLF YR+PEEL+KAEEAQA      + A PGWG      A+P+P+E
Sbjct:   69 EDVIAISARPYGQRAVLKFAQHTGCNAIASRFTPGTFTNQITKQFREPRLLIITDPRTDSQAVRESSFVNVPVIALCDSDSPLQFVDVAIPANNKGKLSIGLLYWLLAREVLRLRGTISRALPWDVAVDLFLYRDPEELKKAEEAQA-IAGDESQARPGWG-----DASPSPVE 236
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17850.4274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHP2_ECTSI1.440e-12183.8140S ribosomal protein SA n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S4DAK2_HETAK1.990e-8475.5140S ribosomal protein SA n=2 Tax=Heterosigma akash... [more]
F0Y9V2_AURAN2.380e-8287.07Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A8J2SYU6_9STRA3.670e-8289.8040S ribosomal protein SA n=1 Tax=Pelagomonas calce... [more]
A0A836CJ71_9STRA3.740e-8282.8440S ribosomal protein SA n=1 Tax=Tribonema minus T... [more]
A0A1V9ZU98_9STRA2.680e-8088.2840S ribosomal protein SA n=3 Tax=Saprolegniaceae T... [more]
K3WLH6_GLOUD3.330e-8080.4740S ribosomal protein SA n=1 Tax=Globisporangium u... [more]
A0A5D6XMB2_9STRA7.220e-8083.1340S ribosomal protein SA n=1 Tax=Pythium brassicum... [more]
D0MUE8_PHYIT1.680e-7981.3740S ribosomal protein SA n=15 Tax=Peronosporaceae ... [more]
A0A0P1B4R0_PLAHL2.440e-7977.5940S ribosomal protein SA n=1 Tax=Plasmopara halste... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17850contigH-paniculata_contig17850:836..4321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.8
Seed ortholog evalue2.8e-34
Seed eggNOG ortholog2880.D7FHP2
Preferred nameRPS0
KEGG koko:K02998
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0000447,GO:0000460,GO:0000461,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006518,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0030684,GO:0030686,GO:0031123,GO:0031125,GO:0031503,GO:0032991,GO:0033036,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0035770,GO:0036464,GO:0042254,GO:0042255,GO:0042274,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043628,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051029,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0065003,GO:0070727,GO:0070925,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097064,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0052@1,KOG0830@2759
Ec32 ortholog descriptionRibosomal protein S2, flavodoxin-like domain
Ec32 orthologEc-07_006200.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons3
Model size1856
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17850.4274.1prot_H-paniculata_contig17850.4274.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17850 1709..3281 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929393.802485-UTR-H-paniculata_contig17850:835..10181622929393.802485-UTR-H-paniculata_contig17850:835..1018Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17850 836..1018 +
1691480842.8595426-UTR-H-paniculata_contig17850:835..10181691480842.8595426-UTR-H-paniculata_contig17850:835..1018Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17850 836..1018 +
1622929393.8243997-UTR-H-paniculata_contig17850:1552..17081622929393.8243997-UTR-H-paniculata_contig17850:1552..1708Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17850 1553..1708 +
1691480842.8695512-UTR-H-paniculata_contig17850:1552..17081691480842.8695512-UTR-H-paniculata_contig17850:1552..1708Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17850 1553..1708 +
1622929393.8746352-UTR-H-paniculata_contig17850:3281..43211622929393.8746352-UTR-H-paniculata_contig17850:3281..4321Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17850 3282..4321 +
1691480842.9035723-UTR-H-paniculata_contig17850:3281..43211691480842.9035723-UTR-H-paniculata_contig17850:3281..4321Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17850 3282..4321 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929393.8406725-CDS-H-paniculata_contig17850:1708..17321622929393.8406725-CDS-H-paniculata_contig17850:1708..1732Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17850 1709..1732 +
1691480842.8771198-CDS-H-paniculata_contig17850:1708..17321691480842.8771198-CDS-H-paniculata_contig17850:1708..1732Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17850 1709..1732 +
1622929393.861094-CDS-H-paniculata_contig17850:2828..32811622929393.861094-CDS-H-paniculata_contig17850:2828..3281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17850 2829..3281 +
1691480842.8855503-CDS-H-paniculata_contig17850:2828..32811691480842.8855503-CDS-H-paniculata_contig17850:2828..3281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17850 2829..3281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17850.4274.1

>prot_H-paniculata_contig17850.4274.1 ID=prot_H-paniculata_contig17850.4274.1|Name=mRNA_H-paniculata_contig17850.4274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp
MRGTIDRAVPWDVPVDLFFYREPEELEKAEEAQAPFQEPAAVAAPGWGAE
PMVGAAPTPMEGFQPAAPVDPTAVPMDSYQAPPAADALGGGWDAAPGGQE
VVVDQAPQEAQLVEQVMPVDAGVPAAAGGGWDAAPQAAAPAAQSGGWGDA
PAQGNGGW*
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mRNA from alignment at H-paniculata_contig17850:836..4321+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17850.4274.1 ID=mRNA_H-paniculata_contig17850.4274.1|Name=mRNA_H-paniculata_contig17850.4274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3486bp|location=Sequence derived from alignment at H-paniculata_contig17850:836..4321+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACGTTGTGGCCATCTCCGCTCGCCCTTACGGCCAACGTGCGGTGCT
CAAGTTCGCTCAGTACACCGGCTGCCTGTCCATCGCGGGGCGTTTCACCC
CAGGAACGTTCACCAACCAGATCACCAAGCAGTTCCGCGAGCCGCGCCTT
CTTATCATTACTGACCCGCGCCCTGACGCCCAGGTGAGGGTCCCAAGATG
CCGCTACTCCGCGGAGGTTCATATATAATGAACGTGTGTTAGAGGTACCT
CATCATAACCAGTAACGTGAACTTTTGAACTCGGGTTTATTGGAAAGCGA
GGGAGGCCTCGTCCGAGATGAATGTTGTCGAGCGAGGCATGTGGATGGGA
CATTTGGACGAGTTCGGGTGTCATGGGAACTTGATATCCACCTAGTCTTT
AGTCATCTCCCTTACCACCTGTCAATTTCGCGCTTAATCAGATTTTATTT
GGAACCGAAATTCCTCAAAAACGATTTTTCCTATGAAGACGTATGTTTTC
GTACCGTAGGCCCTCGCTTTCGAGTAAATTAATTCTGAAAAAAATAGCAG
CGGCGATGACCAACTTTCACGGATTGTATCGAGTTTTTCATGTGTACTTC
ATGATGATTCATTGGGGTTGGGCGTCAAACGTCTCCTGTCCGCATCTAAC
TTCGTATTTTTGATCCGTGCTGTGTTTTGCCCTTCACTTCATACCTCGTG
ACTCATGGTCCAAATAGGCGGTGAAGGAGGCGTCGTACGTGAACGTACCA
GTGATCGCCTTCTGTGACAGCGACTCTCCGCTTCAGAACGTGGATGTGGC
TATTCCTTCCAACAACAAAGGAAAGCTATCAATTGGTCTCCTGTACTGGC
TGCTCGCCCGGGAGGTGCTGCGTATGCGCGGCACCATCGACCGTGCGGTG
AGGTTTGCTTGTAATATATGCTGTTTCAACACCGGTAGACTGTATCGCCG
CAGAACAGAAATGACCGAGAGGTGCAAATTTGGTTAGTGTGTACGAATAC
TTAATGGTCGTCGTTCGGGCTACAGTGAACTAATACCCATGACTCTGAGC
TTCGGACAATTCAACTTGGTGTGGTGGGAGGTCTTGAACCAAATTTATAA
TATCACCGTAACACGACGCGACTTGCGATACCCAAGGTCAAACCTGAATC
AGTCAATATTTTACTGAACCAAAGATGAAGCTCCTGGCCGTAGCACTTTC
ATGATAACGTTTCGAATAGTTCCCATAAGCTCAGAAGTATAGCTACCAAT
TATTTCGAACAAAATAAAAAGCAATACAACGAGGAGAATCGGGAGTTGAA
CTTGGACAAAAATCGTATTTCTGTACGATTCATCCTTGCGACCGAGATGA
ACAACCGTTGGTCTCGAAAAAAAGATGTTCATTAGCGGGTTGTGGCCGTT
GAGCATTGTAAAAGCCGCACGGGGAAAATAGCTGGGAATGACGTCCACGA
AAAAATATTGGAAGATGACCCAGTCATCTTTGTATACTACTTTTTTTTGT
AGCGGTCAACGTTGTATATTTTTGGGCAGTTCGAGTGTCGAGAGGATTGA
AATTTTTCCCAATATATGTGAAGATGTACATGCGAGTACTTTGTCTCATA
CTCCATCCTTTCATGTCTGATGAGTTTGATGTATGTCCGACTTGTTCGGC
ACTGCTCATTAATGATGTTCGTCGTGTTTCGCGCCCAGCGCAATGGCGGC
CCGAATCACGGTGGATAGGCCTGTTCGGGTATGTAGTCGAGTAGTCACTG
CGTTGACCCACTCAGCAAGTACGTCGAACCGTTTTACAGGCGACTTTTGC
GATCTTGAACGGTTAGTGCAATTGTCATTTGCGGCGTCGGCGGACGTCAA
CTGCGTTGCTTACGTCTCTTGGGTTGGTCTGGATCACGCTCTTGCCTCTC
AGCATTGTAGTCATTTCGTACTGGATTGTGCGAAAATCGACCTCTAGAGC
GTTTTATAGTGTCAACACTTTTTTGCGTCCAATAACACAACAGGTCCCGT
GGGATGTGCCCGTGGATCTATTCTTCTACCGCGAGCCTGAAGAGCTTGAG
AAGGCTGAAGAGGCGCAGGCACCCTTCCAGGAGCCCGCTGCCGTTGCCGC
ACCCGGATGGGGCGCAGAACCCATGGTCGGCGCGGCCCCCACACCTATGG
AGGGCTTCCAGCCCGCCGCCCCTGTTGATCCTACGGCGGTCCCCATGGAC
TCGTACCAGGCGCCGCCTGCCGCGGATGCCCTCGGCGGTGGGTGGGATGC
TGCGCCTGGTGGACAAGAGGTGGTCGTTGACCAGGCACCTCAGGAGGCGC
AGCTCGTCGAGCAGGTGATGCCCGTGGATGCCGGGGTGCCTGCGGCGGCT
GGTGGTGGATGGGACGCCGCACCGCAGGCCGCTGCGCCGGCCGCGCAGAG
TGGTGGATGGGGTGATGCCCCCGCACAGGGCAACGGAGGGTGGTAAAAGA
GCGTTCGTCAGTTTCCTCGAATGAACGTTCGCGTAGATGCCCTGTAAGCG
CCGTGTTACACCGCATTATTGTGGGGGGTAATGAGAGAGGGTTGAACTGG
GAGTGGAAGAGGTGGGGAGGATGGACTGGGTAGAGGGCTGGCTGTTTCTG
ACACTTCTCTGTCGAAATCATCGTTCCCTTGAAGTCATCACCCCTTTTTT
CCTGCTTTTTTATTCCCGGGAACCCTGTTGTGGCGATCATTTCTCGTGTG
GACTTTTCTGGAGCCGATATATGAAAGCGAGAGGTCGAGCTTGTGGGGGC
TGGTCGGATGGTACTCGCTTTGGTGCGTCTGTTAATGTCGAGGTTTGGTC
ACCAAGACCAGGACACATCAATTCACCTGGCAAAGTATCGCTTGCTAATA
AAAATGATAAGACATCAAGTTTTTCATGAATAGTGCATTTGGCAAGGGAA
ACATGGCAACATTATAGGCAATTTCACTGTGATTGTGCTAATTTTTGTCA
TAATCCACTCGCCAATCCGTCCGTTGAAAGCAGTTTCTGAATTTCGACTT
TTCGATGAACGACTTACGCTTTTTGTCAGATATTGCATCGTTGGAAGGAT
TGTTGAATCCGTAAGTAACCCACAGGCTCATTATATATTCCGGTATAATC
GACGTGTGACCCAAAGAGCAGGGCGAGACACAAATCCCCCCCCCCCCAGG
CTCCTTTCACCCCTTCCTGTATTAGTGTACATGAGTTTTAATGGTGTGTG
TGGAGTAGGTGTTCATCCCTCCAATCGCCGTGCACGAGATGCCAACAATG
TTGCTGCATCTTGCTTGGATTCTGCCCAATAGCTGTTTAGTCCGAATATT
AATCCTTTGACTATGCAGATCCCTAAATCGGAGAATGAATTGTGCGATTC
AATGGTCTCGATCAGGGTGCAGGGATCCGTATGTTGTGGATATTCCGGAT
AAGAAAATGACCGAACGGAAGGGAAAATCTTCAAAACGATACTTTCTGCT
CACAATTAACAATCATTCGTACACCAATGAATCTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig17850:836..4321+

>mRNA_H-paniculata_contig17850.4274.1 ID=mRNA_H-paniculata_contig17850.4274.1|Name=mRNA_H-paniculata_contig17850.4274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at H-paniculata_contig17850:836..4321+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCGGCACCATCGACCGTGCGATGCGCGGCACCATCGACCGTGCGGT
CCCGTGGGATGTGCCCGTGGATCTATTCTTCTACCGCGAGCCTGAAGAGC
TTGAGAAGGCTGAAGAGGCGCAGGCACCCTTCCAGGAGCCCGCTGCCGTT
GCCGCACCCGGATGGGGCGCAGAACCCATGGTCGGCGCGGCCCCCACACC
TATGGAGGGCTTCCAGCCCGCCGCCCCTGTTGATCCTACGGCGGTCCCCA
TGGACTCGTACCAGGCGCCGCCTGCCGCGGATGCCCTCGGCGGTGGGTGG
GATGCTGCGCCTGGTGGACAAGAGGTGGTCGTTGACCAGGCACCTCAGGA
GGCGCAGCTCGTCGAGCAGGTGATGCCCGTGGATGCCGGGGTGCCTGCGG
CGGCTGGTGGTGGATGGGACGCCGCACCGCAGGCCGCTGCGCCGGCCGCG
CAGAGTGGTGGATGGGGTGATGCCCCCGCACAGGGCAACGGAGGGTGGTA
AGTCCCGTGGGATGTGCCCGTGGATCTATTCTTCTACCGCGAGCCTGAAG
AGCTTGAGAAGGCTGAAGAGGCGCAGGCACCCTTCCAGGAGCCCGCTGCC
GTTGCCGCACCCGGATGGGGCGCAGAACCCATGGTCGGCGCGGCCCCCAC
ACCTATGGAGGGCTTCCAGCCCGCCGCCCCTGTTGATCCTACGGCGGTCC
CCATGGACTCGTACCAGGCGCCGCCTGCCGCGGATGCCCTCGGCGGTGGG
TGGGATGCTGCGCCTGGTGGACAAGAGGTGGTCGTTGACCAGGCACCTCA
GGAGGCGCAGCTCGTCGAGCAGGTGATGCCCGTGGATGCCGGGGTGCCTG
CGGCGGCTGGTGGTGGATGGGACGCCGCACCGCAGGCCGCTGCGCCGGCC
GCGCAGAGTGGTGGATGGGGTGATGCCCCCGCACAGGGCAACGGAGGGTG
GTAA
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