mRNA_H-paniculata_contig1785.4273.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1785.4273.1
Unique NamemRNA_H-paniculata_contig1785.4273.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1785.4273.1 vs. uniprot
Match: A0A8K1CHE0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHE0_PYTOL)

HSP 1 Score: 66.6 bits (161), Expect = 1.270e-7
Identity = 37/106 (34.91%), Postives = 59/106 (55.66%), Query Frame = 2
Query:  857 GFLFSGVLQGREYSYPVDMYGVGLVMFMLLHGTSPFWP-----GGKADFNDAAWNRDERENAAQGRFAIRARSGVMRSGCFGLILQMLETDPSRRMTAAEALWHPW 1159
            G++   +LQ + Y  PVDM+ VG+V++ +L G  PF+P       KADFND  W+            ++ A++  +  G       +LE+DP++R+TAA+AL H W
Sbjct:  592 GYIAPELLQQQPYGKPVDMWSVGIVIYEMLTGYQPFYPPHACIDEKADFNDRVWS------------SVSAQAKDLVQG-------LLESDPTKRLTAADALSHGW 678          
BLAST of mRNA_H-paniculata_contig1785.4273.1 vs. uniprot
Match: E4Z6G1_OIKDI (Protein kinase domain-containing protein n=2 Tax=Oikopleura dioica TaxID=34765 RepID=E4Z6G1_OIKDI)

HSP 1 Score: 64.7 bits (156), Expect = 1.300e-7
Identity = 37/115 (32.17%), Postives = 55/115 (47.83%), Query Frame = 2
Query:  857 GFLFSGVLQGREYSYPVDMYGVGLVMFMLLHGTSPFWPG-----------GKADFNDAAWNRDERENAAQGRFAIRARSGVMRSGCFGLILQMLETDPSRRMTAAEALWHPWVMN 1168
            G+L   V++  +Y+ PVD++ VG+++++LL G  PFW             GK  +    W+   RE                      LI  ML+ DPS+R+TA EAL HPW+ N
Sbjct:  171 GYLSPEVIKKEKYNKPVDLWAVGVILYILLVGYPPFWEEDAKAMYEIIKEGKYSYPSPEWDTVSREVKQ-------------------LIDSMLQVDPSKRITAVEALRHPWICN 266          
BLAST of mRNA_H-paniculata_contig1785.4273.1 vs. uniprot
Match: A0A077WNX1_9FUNG (Protein kinase domain-containing protein n=1 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077WNX1_9FUNG)

HSP 1 Score: 63.5 bits (153), Expect = 2.120e-7
Identity = 36/103 (34.95%), Postives = 55/103 (53.40%), Query Frame = 2
Query:  857 GFLFSGVLQGREYSYPVDMYGVGLVMFMLLHGTSPFW-PGGKADFNDAAWNRDERENAAQGRFAIRARSGVMRSGCFGLILQMLETDPSRRMTAAEALWHPWV 1162
            G++   VL    +   VD++ VG++M+ +L G SPFW P   A F+       + +    G  +  A+          LI Q+L+ DPS+R+TAAEAL HPW+
Sbjct:  122 GYVAPEVLLRAGHGTAVDLWSVGVIMYTMLSGYSPFWQPDETALFDSIIKGNYQFDEEYWGHISDAAKD---------LIQQLLQVDPSKRITAAEALCHPWI 215          
BLAST of mRNA_H-paniculata_contig1785.4273.1 vs. uniprot
Match: E4XU79_OIKDI (Calcium/calmodulin-dependent protein kinase n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4XU79_OIKDI)

HSP 1 Score: 64.7 bits (156), Expect = 3.620e-7
Identity = 37/115 (32.17%), Postives = 55/115 (47.83%), Query Frame = 2
Query:  857 GFLFSGVLQGREYSYPVDMYGVGLVMFMLLHGTSPFWPG-----------GKADFNDAAWNRDERENAAQGRFAIRARSGVMRSGCFGLILQMLETDPSRRMTAAEALWHPWVMN 1168
            G+L   V++  +Y+ PVD++ VG+++++LL G  PFW             GK  +    W+   RE                      LI  ML+ DPS+R+TA EAL HPW+ N
Sbjct:  171 GYLSPEVIKKEKYNKPVDLWAVGVILYILLVGYPPFWEEDAKAMYEIIKEGKYSYPSPEWDTVSREVKQ-------------------LIDSMLQVDPSKRITAVEALRHPWICN 266          
BLAST of mRNA_H-paniculata_contig1785.4273.1 vs. uniprot
Match: A0A3F2S2D0_9STRA (Protein kinase domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S2D0_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 5.040e-7
Identity = 36/106 (33.96%), Postives = 55/106 (51.89%), Query Frame = 2
Query:  857 GFLFSGVLQGREYSYPVDMYGVGLVMFMLLHGTSPFWPGG-----KADFNDAAWNRDERENAAQGRFAIRARSGVMRSGCFGLILQMLETDPSRRMTAAEALWHPW 1159
            G++   +L  + Y  PVDM+ VG+++F +L G  PF+P        ADF+D  W             +  A+S         L+  +L+ DP++R+TAAEAL HPW
Sbjct:  598 GYIAPELLMKQSYGKPVDMWSVGIIIFEMLTGYQPFYPPHMCIEENADFSDRVWKT----------ISANAKS---------LVEGLLQRDPTKRLTAAEALAHPW 684          
BLAST of mRNA_H-paniculata_contig1785.4273.1 vs. uniprot
Match: H3GCF9_PHYRM (Protein kinase domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=H3GCF9_PHYRM)

HSP 1 Score: 64.7 bits (156), Expect = 5.050e-7
Identity = 35/106 (33.02%), Postives = 54/106 (50.94%), Query Frame = 2
Query:  857 GFLFSGVLQGREYSYPVDMYGVGLVMFMLLHGTSPFWPGGK-----ADFNDAAWNRDERENAAQGRFAIRARSGVMRSGCFGLILQMLETDPSRRMTAAEALWHPW 1159
            G++   +LQ + Y  PVDM+ VG+++F +L G  PF+P        ADF+D  W                     + +    L+ ++LE DP++R+TAAEAL H W
Sbjct:  601 GYIAPELLQQQSYGKPVDMWSVGIIIFEMLTGYQPFYPPHACIEEDADFSDRVWK-------------------TISADAKDLVQRLLERDPAKRLTAAEALAHTW 687          
BLAST of mRNA_H-paniculata_contig1785.4273.1 vs. uniprot
Match: A0A3M6VTN0_9STRA (Protein kinase domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VTN0_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 5.050e-7
Identity = 35/106 (33.02%), Postives = 54/106 (50.94%), Query Frame = 2
Query:  857 GFLFSGVLQGREYSYPVDMYGVGLVMFMLLHGTSPFWPGGK-----ADFNDAAWNRDERENAAQGRFAIRARSGVMRSGCFGLILQMLETDPSRRMTAAEALWHPW 1159
            G++   +LQ + Y  PVDM+ VG+++F +L G  PF+P        ADF+D  W                     + +    L+ ++LE DP++R+TAAEAL H W
Sbjct:  601 GYIAPELLQQQSYGKPVDMWSVGIIIFEMLTGYQPFYPPHACIEEDADFSDRVWK-------------------TISADAKDLVQRLLERDPTKRLTAAEALAHTW 687          
BLAST of mRNA_H-paniculata_contig1785.4273.1 vs. uniprot
Match: A0A1Y1VEN7_9FUNG (Pkinase-domain-containing protein n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1VEN7_9FUNG)

HSP 1 Score: 64.7 bits (156), Expect = 5.320e-7
Identity = 37/111 (33.33%), Postives = 57/111 (51.35%), Query Frame = 2
Query:  857 GFLFSGVLQGREYSYPVDMYGVGLVMFMLLHGTSPFWPGGKADFNDAAWNRDERE---NAAQGRFAIRARSGVMRSGCF-GLILQMLETDPSRRMTAAEALWHPWVMNNCP 1177
            G+    +L+G+ YS  VD++ VG++ ++LL G SPF+           + +D  +       GR+    R     S C    I  +L+ DP +R+TA EAL HPW+ N CP
Sbjct:  187 GYTAPEILKGKSYSKAVDLWSVGIITYILLSGYSPFY-----------YCKDTNQLYDAIMHGRYTFEDRYWHNISSCAKDFIKALLQVDPEKRITAEEALDHPWLNNLCP 286          
BLAST of mRNA_H-paniculata_contig1785.4273.1 vs. uniprot
Match: A0A7R9PPI7_TIMGE (Hypothetical protein n=3 Tax=Timema TaxID=61471 RepID=A0A7R9PPI7_TIMGE)

HSP 1 Score: 63.2 bits (152), Expect = 5.760e-7
Identity = 39/124 (31.45%), Postives = 59/124 (47.58%), Query Frame = 2
Query:  857 GFLFSGVLQGREYSYPVDMYGVGLVMFMLLHGTSPFWPGGKADFNDAAWNRDERENAAQGRFAIRARS-GVMRSGCFGLILQMLETDPSRRMTAAEALWHPWVMNNCPARQMQWAVSSALRVYD 1225
            G+    +L  +EY   VD++ VG+VM+++L G  PFW        D A      +   +G F   +     +      LI Q+L+ +PS R TA+EAL HPWV    P      +V   LR ++
Sbjct:  170 GYCAPEILLNKEYDLSVDLWSVGVVMYIMLCGYEPFW--------DDAGEIGMCKRVVEGEFEFSSPWWDDISDSAKDLISQLLQLEPSSRPTASEALEHPWVKGETPRCTNMASVVKRLREFN 285          
BLAST of mRNA_H-paniculata_contig1785.4273.1 vs. uniprot
Match: A0A8K0JTW3_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0JTW3_LADFU)

HSP 1 Score: 62.4 bits (150), Expect = 5.830e-7
Identity = 37/102 (36.27%), Postives = 57/102 (55.88%), Query Frame = 2
Query:  857 GFLFSGVLQGREYSYPVDMYGVGLVMFMLLHGTSPFWPGGKADFNDAAWNRDERENAAQGRFAIRARSGVMRSGCFGLILQMLETDPSRRMTAAEALWHPWV 1162
            G+    V+  ++Y  PVD++ +G++++++L G  PFW     D  DAA    E+   A   F      GV  S    LI ++L+ DP++R+TA EAL HPWV
Sbjct:   89 GYCAPEVILKKDYGPPVDIWNLGVIIYIILCGLEPFWD----DAGDAAVQ--EKVIKADYSFDTDGWDGVSDSAK-DLISKLLQIDPAKRLTAKEALNHPWV 183          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1785.4273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8K1CHE0_PYTOL1.270e-734.91Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
E4Z6G1_OIKDI1.300e-732.17Protein kinase domain-containing protein n=2 Tax=O... [more]
A0A077WNX1_9FUNG2.120e-734.95Protein kinase domain-containing protein n=1 Tax=L... [more]
E4XU79_OIKDI3.620e-732.17Calcium/calmodulin-dependent protein kinase n=1 Ta... [more]
A0A3F2S2D0_9STRA5.040e-733.96Protein kinase domain-containing protein n=3 Tax=P... [more]
H3GCF9_PHYRM5.050e-733.02Protein kinase domain-containing protein n=17 Tax=... [more]
A0A3M6VTN0_9STRA5.050e-733.02Protein kinase domain-containing protein n=1 Tax=P... [more]
A0A1Y1VEN7_9FUNG5.320e-733.33Pkinase-domain-containing protein n=1 Tax=Piromyce... [more]
A0A7R9PPI7_TIMGE5.760e-731.45Hypothetical protein n=3 Tax=Timema TaxID=61471 Re... [more]
A0A8K0JTW3_LADFU5.830e-736.27Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1785contigH-paniculata_contig1785:19843..24457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size2215
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1785.4273.1prot_H-paniculata_contig1785.4273.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1785 20782..23547 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929393.7011359-UTR-H-paniculata_contig1785:19842..207811622929393.7011359-UTR-H-paniculata_contig1785:19842..20781Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1785 19843..20781 -
1691480842.8103092-UTR-H-paniculata_contig1785:19842..207811691480842.8103092-UTR-H-paniculata_contig1785:19842..20781Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1785 19843..20781 -
1622929393.7625575-UTR-H-paniculata_contig1785:23547..244571622929393.7625575-UTR-H-paniculata_contig1785:23547..24457Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1785 23548..24457 -
1691480842.8472245-UTR-H-paniculata_contig1785:23547..244571691480842.8472245-UTR-H-paniculata_contig1785:23547..24457Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1785 23548..24457 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929393.7161233-CDS-H-paniculata_contig1785:20781..209581622929393.7161233-CDS-H-paniculata_contig1785:20781..20958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1785 20782..20958 -
1691480842.819595-CDS-H-paniculata_contig1785:20781..209581691480842.819595-CDS-H-paniculata_contig1785:20781..20958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1785 20782..20958 -
1622929393.7315376-CDS-H-paniculata_contig1785:22960..230931622929393.7315376-CDS-H-paniculata_contig1785:22960..23093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1785 22961..23093 -
1691480842.827884-CDS-H-paniculata_contig1785:22960..230931691480842.827884-CDS-H-paniculata_contig1785:22960..23093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1785 22961..23093 -
1622929393.7463856-CDS-H-paniculata_contig1785:23491..235471622929393.7463856-CDS-H-paniculata_contig1785:23491..23547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1785 23492..23547 -
1691480842.8371282-CDS-H-paniculata_contig1785:23491..235471691480842.8371282-CDS-H-paniculata_contig1785:23491..23547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1785 23492..23547 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1785.4273.1

>prot_H-paniculata_contig1785.4273.1 ID=prot_H-paniculata_contig1785.4273.1|Name=mRNA_H-paniculata_contig1785.4273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
MYGVGLVMFMLLHGTSPFWPGGKADFNDAAWNRDERENAAQGRFAIRARS
GVMRSGCFGLILQMLETDPSRRMTAAEALWHPWVMNNCPARQMQWAVSSA
LRVYDMDCKEEIVQRFLSLME*
back to top

mRNA from alignment at H-paniculata_contig1785:19843..24457-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1785.4273.1 ID=mRNA_H-paniculata_contig1785.4273.1|Name=mRNA_H-paniculata_contig1785.4273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4615bp|location=Sequence derived from alignment at H-paniculata_contig1785:19843..24457- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTGTGGGAGTTACACCCACTAAAGACCCTTGACTAGTCTTCCAGTCAT GCTCAGTACACGAGCTACCCTACCCATTCGGGCGTAGGTCCGTGGTCCAA TCGTTACTCGTGTACGACCCGTTTCCATGGCCCGACATTGAATGCAGGCT GAATAAAACGTGAAAACAAGTACCTGGTACTACATAAGTTAGCGTCCAAC TCTTGAGTGCAGCATATCAATTTACTCGATGATATTGTTGTCAAGCGGTT AATGTGGGTTTTGAGCTTCATCTGTACACATTGGGTCAATAGCTTAAAAA CAAAAAAAGCGGTAACGCGTTTTACGCTTTTTAGTTTACCTTGCCAAACT GCTCACGTTTTTAATTTTCTGCTCACATTTTTTTACATGCAGTCAGCGCA TTACATTGTAGTACTTGGGAGCTTGGTTGATTGTAGTTTCACACCCACAC CATTTTTATCTCTCTGTTATGGTACTAGTCGTCGATGCGTTCTTTGCTCT TGTCATGTTGCCCGACTGTCACCTACACGAACCAATCTGCATGATCGCCT CTAGTTTCGTTTTCCAGCACATAACCCAATATATGCATTGCAAAAAGACA GACCTCAAAATCAGATTCCAGAGGTCTGATTGAATGCGAGTGCGACCCTT GTGCCGTTATTTTGCAACTCGGGACGGTCATTATCTACTCGTATGCCTGC ATGAAAAACGTACTAGTAGTCCGCACAAGCCGGACTCTTGAGATACAAGT AGCTCTGGGGATGCGATCTTAGTGCGCTGTATTCGTCCCGTGTGATGACT CGTTGTAACACGGTGCCTTGTGTAGACCCGCCGCTGTACCGTGTTTCCAA TTGTGGGGATTCCTATTTTCGGGGGTTCTCCAAGGGCGTGAGTACAGCTA CCCCGTCGACATGTACGGAGTCGGGCTGGTGATGTTCATGCTGCTTCACG GCACCTCACCCTTTTGGTGAGTCTCTTCTACTAGAGCTCATGAAGCGTGT GCACTGTGCATGAAAAGCAAACATGTTCTTGACGTAGCGGCGGTGGTTCA CTAGTAATACTTTTTGTCTGTCAGAAGACGAGAGATGAAACTGAGTTGAG CAGCATAATTTTAGCGAGGAATTAATGGCTCCGGTCTTCTGTCGCCCCAG TATCTCTCGTCCGTGTCGATCGATGATGGCACATGGGAGTAAATCAAATA CACCGGAGGCGTGTACATATGTTGTGTATACATGTATATTTTTTCGCGTA TCGTATGATAGGTGTCCGTGTGGAGCGGAGCGGACATGTACTGACGGGAG GGTAATTGTATCTGCACAGACAGTAGGTGAAATGGCGTGCTCATATCTCT TTTTCTGAATATAGGCCCGGGGGAAAGGCTGACTTTAACGATGCGGCCTG GAACCGCGACGAACGAGAGAACGCCGCCCAGGGAAGATTCGCGATAAGGG CACGGAGTGGTGTGATGCGGTCGGGGTGCTTCGGTCTCATCCTGCAGGTG TGATATGGGGTATTGCTAGCATGGTTTCACTGGTGAAAAAGTACCCATTC ATATCTCCCAACGTTCAGTACTGATCTAATACCACCCTGAAATACCGTGG TTATCATAGTGTGTGTTGAATTTGCTTATGCTCTTGGTCCTGTTTTGATG ACGATCGGTGGAATCAGTCGGTTTTCATGGTGGTGGTGGCTGCTGGAAGT GCATGCTTGTTGGTCTCGGCATGTACGCACGGGGTTGAAGTTCATTTCGT TGTCGTTGTCGTGCCGCCTTGTCGTGGTGGCTGGGTTTCGACGAGACACC GGCGATGCATGGCTTGAGTTATCGAGTACCGTAGAAACAGTTGCGCTGTA AGAGTTTTTCGTGCGTTTGAAACGCCGGGAGGACATGAAATGAGAGCGAA GACCTCTTGAGTATGTATGTCCCGAGGGGGAGTCGTATGGAAATGACGAA ACGGGAAAAGCAAAGAAACAGCCTCCGAAGTTGTTGGATACGATACGGGG GCGGGGGGTGGTGGGCGGTGGGCGGGGAGAAAAAATTGAGCCGAAATACC TCGAACGCTCCGGGCGATTGTCTTTTCCGCAAACACGGACAGTGAGCGAC GATACTGTAATATTGTATGCATGTAAATACCAGCAGTGGCGTGCGTCCTA ATGGTCATGTCGACAGTAATGCCAGTTTCCCACTGTAGTTGGTGTGTAAG AGAAGAAGGGTATTTTCCCGTTGTTGTCTCTCTTTTTTGTGTTAGTTGCA CGGGACGACAACGCCCCCCGCTCTGGGGTATTTATATGGGCTTTTACGGT ACTTGACACATATTGAAAGACTAAAAGCTGTTTCACAAACCACGTACAAT TATGTATAGCGCGGTAGGCCTATTAACTTGCAAGGCGAAAGCACCATGAA GGCTGTTGATGCAAATTTTTCGTCCGTTCTCGTAGGGCTATGTATCGGTA GTGATATTATCCGATACGATATTTTTCGGGACCGTCATATCGCTGCTTGC GTTATCGCCTGTTTAGCCCTGCACGTTTGGTAACAGCACATGGGACATGG ATTACACAGCTGTACACAGGCAGCGTAATGAACTCAGCGAGCCTATCAGA CACAGCCGCACAGTTCCATGGTATACATTCGAGCGTTAGGACTATCCACC CTTGTACTGTATTATCATTTATTTACGTGTGATATGTTCTTGTGAACTAA CATCAAAATGTCATGAACAGGTGAAAGTTCTGTTGACTAAAAGTACTGAC CGAATGCCTGCTTGTTGTGCCTGGAAATTCATGTTGCATCTTGCTTCAAT CTGAAAGGGTAAAAAAGGCAGACGTTCAGATGTAACTTCGCCCTTGAGAT TGTTTGTTGACCTCCATGAGAGTGATGTATAATGTTTGAAGATATTTCAT AATTGATGTTTGAATTTTTAGTCCAGGTCCTCGTTAGTTGCTTTTGATGA AAAAAACCTGACTCACGAAAGGGCACAAAATGGCACAAAAGCTACCGTAG GCACCATGCAGAAATGCCTGCTAACTTGCTATCATGCTAGCATAATTTCT CGCTTTTTCATGGCACGTTCGTGTGTTGACGCTCATGTGTTGGCGAAATT GTTGTTTCCGCTGCGCCATAATTTGACGTGATTTTGAAGGGAGATGAACC CAAAATGCATATTTTCCGTGCCTCCGGCGGCGCCTCCAGCGGGCCGGGCC CCCGTCACTAGCCAGGGGGCTCTGTTGCGGTTTTGCCTTCCTGGTGCTTC GCGCAGCCAATATTTCCACGATAGCCAGTATATACCGTATCGTTTTTCTC TACCGATACACAGCCCTACCAAATGGTTAGTCGGCGTCTCGTTCTGTGTA CTTCTGTATATATACACGGTTGAAGGGTCAACAAATTCGGGCAAGCACGT GCGCAGATTCTTCCCCTACACATGGTGGGCTGGCTATCTATCTATCTGAG CGCTATCGAGCATCTAACCCATGTGTACGCTCCACGTTTCTCGTGACAGA TGCTCGAGACCGACCCCAGCCGCCGAATGACTGCTGCGGAGGCCTTGTGG CACCCATGGGTGATGAACAATTGCCCAGCAAGGCAAATGCAATGGGCGGT ATCTAGTGCTCTTCGCGTATACGACATGGATTGCAAGGAAGAGATCGTAC AGCGCTTTCTGTCCCTCATGGAGTGAGTGGACGACAGAGACAGAGGCAGA TGCCTTGTGTGATGTGTTGCAAGTGCCCTGCTCGTCCGATAATTTCGGAC GGTGGGTATACTTTTTGTAATAGCCATGTAGGTGGGTGTGACATCTTAGA GCTGTGGTGCAGTCGGGGGTATCTCTTGTGGAGATGTGGAAGCTATTGAG TTGCGCGTGCTAGGATGGATAGCCCCATGTGAAGACGTGGAAGCCATGGG TCTCTACTCGAATGCACAATAACAACGGTTCAGTTGCGATTCCCGAGAAG GTGTGGGTATGTGTGTGTATGTGTTTGTGTGTATTTGACTATTATAGCTA ATATAATGCAACGGTCGGGGGGCAACAGGATGGAACTACAGTAACAAGAT TGAGAGAGACTGCTCCTGATGCATCCAAGAAAATATAGTAACCCTATAAA TACAAGCAGGAAAGCGGTATGCGCGATTATGGTTGAGAGAGGGAAAAAAA TGCATGTAAAGAAATGAGCATTTAAGAAGAGATGGATTACTTATTTACCA AAACGTCGGGTGAGATAGCATGAGATGAGGGCTACGAGAAAGCGATTCTG TGTGGAAGCATTCGCTGGCGAGTGAAGACTCTATTTTGTTTGGGCGTTGA GACAATTGGGGTTGCCATGGTAGGTTGGGAGAGAGCAACTCGGATATATG AGGGCTTGCCTACTTTTTGGTCATTCATGAAAAAAATGGGGGGAATAATG TAGGATACGTTTTTCTAGTGTTATTCGGGTTGGTTCTGTTCGCGTGCATG CGTGCAGCGGTCTCTAGCGACTCCATATGTCCGTATTGCAATGTTTAGGC CTATGCGGACGGGGAATGGGGGGAAAGGAATGTGTATTTGAAGAATAGTA TACAGGAACAATATCCGAAAAAATGGCAATCAAAGGGGGGGTGCATGGGG TTTTGAACGTGAGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1785:19843..24457-

>mRNA_H-paniculata_contig1785.4273.1 ID=mRNA_H-paniculata_contig1785.4273.1|Name=mRNA_H-paniculata_contig1785.4273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig1785:19843..24457- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACGGAGTCGGGCTGGTGATGTTCATGCTGCTTCACGGCACCTCACC
CTTTTGATGTACGGAGTCGGGCTGGTGATGTTCATGCTGCTTCACGGCAC
CTCACCCTTTTGGCCCGGGGGAAAGGCTGACTTTAACGATGCGGCCTGGA
ACCGCGACGAACGAGAGAACGCCGCCCAGGGAAGATTCGCGATAAGGGCA
CGGAGTGGTGTGATGCGGTCGGGGTGCTTCGGTCTCATCCTGCAGGCCCG
GGGGAAAGGCTGACTTTAACGATGCGGCCTGGAACCGCGACGAACGAGAG
AACGCCGCCCAGGGAAGATTCGCGATAAGGGCACGGAGTGGTGTGATGCG
GTCGGGGTGCTTCGGTCTCATCCTGCAGATGCTCGAGACCGACCCCAGCC
GCCGAATGACTGCTGCGGAGGCCTTGTGGCACCCATGGGTGATGAACAAT
TGCCCAGCAAGGCAAATGCAATGGGCGGTATCTAGTGCTCTTCGCGTATA
CGACATGGATTGCAAGGAAGAGATCGTACAGCGCTTTCTGTCCCTCATGG
AGTGAATGCTCGAGACCGACCCCAGCCGCCGAATGACTGCTGCGGAGGCC
TTGTGGCACCCATGGGTGATGAACAATTGCCCAGCAAGGCAAATGCAATG
GGCGGTATCTAGTGCTCTTCGCGTATACGACATGGATTGCAAGGAAGAGA
TCGTACAGCGCTTTCTGTCCCTCATGGAGTGA
back to top