mRNA_H-paniculata_contig17838.4269.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17838.4269.1 vs. uniprot
Match: A0A6H5KN26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN26_9PHAE) HSP 1 Score: 108 bits (269), Expect = 6.460e-21 Identity = 68/211 (32.23%), Postives = 110/211 (52.13%), Query Frame = 1
Query: 1 AFNIATESMAERTTYDKLFFMNELILAVQKS-----RNKKDCSIADITDAYGRIGAKAPAENTLRQWRKACMGMSSKAFEVARAVSESEEKGVDPNALTFAYLARKQFLDMQERPTHQAMCLQIIARFKS-SYGKAPKP-ADFPQIEQEAEHAGDFMEGINDIVPYEKWTPALRREAEKLAFVKVGACITWLKPHVDAILEEIMALEAKLP 612
A N AT + AERT YD+L+F + L Q S + + DI + Y + P+++TLR W KA G+ +A + + ESE+K +D N +T AY+++ F+ + Q LQI+AR+K G+A K D P I +A+ + + IVPY+ W+ L+ E E +A+ K A ++ K +D + +E++ L LP
Sbjct: 106 ACNDATSTFAERTIYDRLYFFSSLYKGAQASLETSRSRSRQVNPKDIKEFYAKAKQAVPSDSTLRSWLKAVRGIKEEALTALKDLVESEDKSIDLNLVTLAYISKDDFMALSAE--EQGFNLQILARWKKFQQGRAFKADIDTPPIIAQAKDVAQWYFALCGIVPYQDWSQELKSEFENMAYAK-PALWSFQKAFLDGLEDEVLKLSKGLP 313
BLAST of mRNA_H-paniculata_contig17838.4269.1 vs. uniprot
Match: D7G124_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G124_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 2.930e-17 Identity = 59/176 (33.52%), Postives = 91/176 (51.70%), Query Frame = 1
Query: 1 AFNIATESMAERTTYDKLFFMNELILAVQKS-----RNKKDCSIADITDAYGRIGAKAPAENTLRQWRKACMGMSSKAFEVARAVSESEEKGVDPNALTFAYLARKQFLDMQERPTHQAMCLQIIARFKS-SYGKAPKP-ADFPQIEQEAEHAGDFMEGINDIVPYEKWTPALRRE 507
A N AT + AERT YD+L+F + L Q S + + DI + Y + P+++TLR W KA G+ +A + ESE+K VD N +T AY+++ F+ + Q LQI+AR+K G+A K D P I +A+ + + IVPY+ W+ L+R+
Sbjct: 180 ACNDATSTFAERTIYDRLYFFSSLYKGAQASLETSRSRSRQVNPKDIKELYAKAKQAVPSDSTLRSWLKAVRGIKEEALTALEDLVESEDKSVDLNLVTLAYISKVDFMALSAE--EQGFNLQILARWKKFQQGRAFKADVDTPPIIAQAKDVAQWYFALCGIVPYQDWSQELKRQ 353
BLAST of mRNA_H-paniculata_contig17838.4269.1 vs. uniprot
Match: D7FYY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY9_ECTSI) HSP 1 Score: 89.0 bits (219), Expect = 8.620e-16 Identity = 50/151 (33.11%), Postives = 81/151 (53.64%), Query Frame = 1
Query: 124 ITDAYGRIGAKAPAENTLRQWRKACMGMSSKAFEVARAVSESEEKGVDPNALTFAYLARKQFLDMQE-RPTHQAMCLQIIARFKSSYG--KAPKPADFPQIEQEAEHAGDFMEGINDIVPYEKWTPALRREAEKLAFVKVGACITWLKPHV 567
++DAY + G P+ TL +++ +G+ + AF +AVSESEEKGVD L+ + L L R Q++ + I+ARFK++ K P D P+++Q A AG++ + + ++PYE WT + L + K TW K H+
Sbjct: 22 LSDAYKKSGDSPPSNPTLCSYKRLVIGLKAPAFAALKAVSESEEKGVDIGCLSKSLLDCDAVLKFPPGREFEQSLLIHILARFKTNEPGHKMPAKTDLPKLKQRALDAGEYFQLVTSVIPYESWTSPFHKSFYSLVYGKHTDWETWGKGHM 172
BLAST of mRNA_H-paniculata_contig17838.4269.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 5.760e-15 Identity = 52/123 (42.28%), Postives = 73/123 (59.35%), Query Frame = 1
Query: 1231 VRPLALAGASN--CSLVNACRAESIVIHDEVPLAAGSATMTGGSLSTKCAAKLVVVSIGGDKTLLKPSTATDARLNKLFQAVKDSLHPHGTVAIMVPHPWHLHAGRIHSALTHVSVGLHVEDH 1593
VRP L G S L++ CR E+ +HD VPL + + LS + A KLV+VSIG ++ LL+ S AT+ L ++ V+ +HP GT+A++VPHPW H R+ A+ VGL VEDH
Sbjct: 305 VRPSLLGGPSGNEAVLMDKCRDENTTLHDIVPLDPTGSDVD--KLSFRNAPKLVIVSIGAEQRLLRTSEATNTHLRRVIDNVRGRMHPDGTIALVVPHPWSAHFHRLQEAVRDACVGLVVEDH 425
BLAST of mRNA_H-paniculata_contig17838.4269.1 vs. uniprot
Match: A0A6H5KC60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC60_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 3.550e-12 Identity = 47/115 (40.87%), Postives = 67/115 (58.26%), Query Frame = 1
Query: 1231 VRPLALAGASN--CSLVNACRAESIVIHDEVPLAAGSATMTGGSLSTKCAAKLVVVSIGGDKTLLKPSTATDARLNKLFQAVKDSLHPHGTVAIMVPHPWHLHAGRIHSALTHVS 1569
VRP L G S L++ CR E+ +HD VPL + + LS + A KLV+VSIG ++ LLK S AT+ L ++ V+ +HP GT+A++VPHPW H R+ T +S
Sbjct: 363 VRPSLLGGPSGNEAVLMDKCRDENATLHDTVPLDPTGSDVD--KLSFRNAPKLVIVSIGAEQRLLKTSEATNTHLRRVIDNVRGRMHPDGTIALVVPHPWSAHFHRLQGDSTFLS 475
BLAST of mRNA_H-paniculata_contig17838.4269.1 vs. uniprot
Match: D8LJG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG8_ECTSI) HSP 1 Score: 69.7 bits (169), Expect = 8.730e-9 Identity = 41/120 (34.17%), Postives = 66/120 (55.00%), Query Frame = 1
Query: 160 PAENTLRQWRKACMGMSSKAFEVARAVSESEEKGVDPNALTFAYLARKQFLDMQERPTHQAMCLQIIARFKS-SYGKAPKP-ADFPQIEQEAEHAGDFMEGINDIVPYEKWTPALRREAE 513
P+++TLR W KA G+ +A + + ESE+K +D N +T AY+++ F+ + Q LQI+AR+K G+A K D P I +A+ + + IVPY+ W+ L+R E
Sbjct: 25 PSDSTLRSWLKAVRGIKEEALTALKDLVESEDKSIDLNLVTLAYISKDDFMALSAE--EQGFNLQILARWKKFQQGRAFKADVDTPPIIAQAKDVAQWYFALCGIVPYQDWSQELKRLKE 142 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17838.4269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17838.4269.1 >prot_H-paniculata_contig17838.4269.1 ID=prot_H-paniculata_contig17838.4269.1|Name=mRNA_H-paniculata_contig17838.4269.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=523bp MAERTTYDKLFFMNELILAVQKSRNKKDCSIADITDAYGRIGAKAPAENTback to top mRNA from alignment at H-paniculata_contig17838:1086..5174- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17838.4269.1 ID=mRNA_H-paniculata_contig17838.4269.1|Name=mRNA_H-paniculata_contig17838.4269.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4089bp|location=Sequence derived from alignment at H-paniculata_contig17838:1086..5174- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17838:1086..5174- >mRNA_H-paniculata_contig17838.4269.1 ID=mRNA_H-paniculata_contig17838.4269.1|Name=mRNA_H-paniculata_contig17838.4269.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3138bp|location=Sequence derived from alignment at H-paniculata_contig17838:1086..5174- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |