mRNA_H-paniculata_contig17836.4268.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17836.4268.1
Unique NamemRNA_H-paniculata_contig17836.4268.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig17836.4268.1 vs. uniprot
Match: D7G1I7_ECTSI (Protein HGH1 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1I7_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 9.720e-19
Identity = 50/65 (76.92%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 TIAADAVAALVNVSAEDNTSGVALEDMCKAGIVNRMMEAVSAEECSPRVRDLSLKLLANVTRVQV 195
            TI  DAV+ LVNVSAE+ TS  ALEDMCKAGIVNRMMEAVS E+C P +RDL L+LLANVTRVQV
Sbjct:  113 TIGKDAVSCLVNVSAEE-TSVAALEDMCKAGIVNRMMEAVSDEQCIPFMRDLCLQLLANVTRVQV 176
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17836.4268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1I7_ECTSI9.720e-1976.92Protein HGH1 homolog n=2 Tax=Ectocarpus TaxID=2879... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17836contigH-paniculata_contig17836:415..2158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue2e-15
Seed eggNOG ortholog2880.D7G1I7
Preferred nameHGH1
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
EggNOG free text desc.Domain of unknown function (DUF383)
EggNOG OGsKOG2973@1,KOG2973@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929392.9881334-CDS-H-paniculata_contig17836:414..5051622929392.9881334-CDS-H-paniculata_contig17836:414..505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17836 415..505 -
1691480842.5902524-CDS-H-paniculata_contig17836:414..5051691480842.5902524-CDS-H-paniculata_contig17836:414..505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17836 415..505 -
1622929393.0295255-CDS-H-paniculata_contig17836:2054..21581622929393.0295255-CDS-H-paniculata_contig17836:2054..2158Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17836 2055..2158 -
1691480842.6047406-CDS-H-paniculata_contig17836:2054..21581691480842.6047406-CDS-H-paniculata_contig17836:2054..2158Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17836 2055..2158 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17836.4268.1prot_H-paniculata_contig17836.4268.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17836 415..2158 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17836.4268.1

>prot_H-paniculata_contig17836.4268.1 ID=prot_H-paniculata_contig17836.4268.1|Name=mRNA_H-paniculata_contig17836.4268.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
TIAADAVAALVNVSAEDNTSGVALEDMCKAGIVNRMMEAVSAEECSPRVR
DLSLKLLANVTRVQV
back to top

mRNA from alignment at H-paniculata_contig17836:415..2158-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17836.4268.1 ID=mRNA_H-paniculata_contig17836.4268.1|Name=mRNA_H-paniculata_contig17836.4268.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1744bp|location=Sequence derived from alignment at H-paniculata_contig17836:415..2158- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGATCGCTGCAGATGCGGTAGCAGCGTTGGTGAATGTGAGTGCAGAGGA
CAATACATCAGGTGTTGCCCTGGAGGATATGTGCAAAGCTGGCATTGTCA
ACAGGTGAGCTGAATGACGATAGGGCTCTATCTCCCCTTTGAACCCTGAG
AGGAAGGCTCGAGGTCATACCTCAAATATCTAGGAGGGGGGGGTCGGGGG
GGGGGGGCATGTCTTACGTTTCACGTTTTTTTCAAATTGCACTATTTGTG
GTGGGCACCTGAGCAAAACATCTTAATAGGGGGGTAATAATTATCCAACG
TCTGTCGAGGACAGTTACCCTCATTTTCGCGTTGGCGATACCGGTGAGAT
CCGAACTCACGCGTGCGAAGCACAACGACTTGGCATGGAGGGCAAGTGTC
CTGGACAGAGGTGTGGATAATGAATACCCCCCTTCGAAGGTGTCTCCTAA
AGTGGCCACCCACATATTTCAGTGGCGTTATATAATGTAAAATAATCGTT
GAGGAGAGAATTTTTGTGTTGATTGATTTTGTCATCCTCCATCCCCCCTC
CTCCCTCTCTCTCTCTCTAAAAAGAGCAATGGTTGGTTTCGGTGTAGGTG
ACGCACTCGGGGCGTTTTTTTGTTTTTTTTTCCAAGTTGCCCCTTGGAGG
GGTTGAACGTTTACTCGCCGCTCTTTCGCATATTAATCCTGCAGAAATCG
TTTTTTATGTATGAATATACTAATATAGAAAGGTTTGATTTACCCGCCCC
CCACGCCCAGGACAAGTAAAGTAAATACAAACCATTGAAAGTATTTGCGA
TGAAATGTCGAAAAAAAAGAATAAAAAAAAAAGTTTGTTTTCCCTCAAAG
GCTCAGAATGTATGAAGTATCCAGGGGGGGGAAAATGTGTTTGAATGAAC
ACCCCCCTGTTTTGTTCGTTTTTTTTGTACTATTTCTTGTTCGGGGCAGT
TGTAGATGGTCCGGGGCACACAGAATTTCCATGAGCTGAAACTCAGGCGA
ATCCTTCTCTTTTTTTTTTTTTCGTGGCCAACGCACACAAAATTATTCGT
ATTTTTCCCGCCGGGGGTGAGAAAATTGCATCAGCAAGTAAGTAGCCTGT
TGATGCTCTGCTTTTCAATTTTACGATTTCGAACCTAAAAAAAAAAAAAA
CACGTAAAAGAGGGGGAACAAAAAACGCAGAGCTCCTCGTGGCCACCATG
CCATATTCATGAATTATCACCTTAGGGTTGGAAAGAAGTTGTTTTACTGT
TCATATTTATAGAGAGTGCTTGCTTGAGATAATTTTTTTAATTTGGTCTT
GTATGGCTATAATAGTGAGCTCCAGGTGTCTCGAACCCTCAGTTTGTCTT
GATCGACTTCCGCGATAAAAAAAAAAAAGAGGAAAAAAAGGAATTCTCAA
TTTGAAATTTCGCAAAATTCGCAAATTTCGGAAGTTTCGAAAGTTTCGCG
AGTTTTACGAAATTTTGATGGGTTGTAAAAGGGAATTTGTTGATGTTGTA
GCGAGCGAGACCTTGGTGCAGGCGGGATTCGGGTCTGGGACCTGCAGCTC
TCTATGAGTCATCCAGAAGCAAATGGATTTTTCTTGTAAAACAGACTTAC
ATGTTTGCCAACACCCTGTTTTTCCAATGTTGACGTGGGGTGATGGATTT
CAGGATGATGGAGGCGGTTTCTGCGGAGGAGTGCTCGCCACGAGTACGGG
ATTTGTCTTTGAAGCTCCTGGCGAATGTGACGAGGGTTCAGGTA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig17836:415..2158-

>mRNA_H-paniculata_contig17836.4268.1 ID=mRNA_H-paniculata_contig17836.4268.1|Name=mRNA_H-paniculata_contig17836.4268.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig17836:415..2158- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGATCGCTGCAGATGCGGTAGCAGCGTTGGTGAATGTGAGTGCAGAGGA
CAATACATCAGGTGTTGCCCTGGAGGATATGTGCAAAGCTGGCATTGTCA
ACAGACGATCGCTGCAGATGCGGTAGCAGCGTTGGTGAATGTGAGTGCAG
AGGACAATACATCAGGTGTTGCCCTGGAGGATATGTGCAAAGCTGGCATT
GTCAACAGGATGATGGAGGCGGTTTCTGCGGAGGAGTGCTCGCCACGAGT
ACGGGATTTGTCTTTGAAGCTCCTGGCGAATGTGACGAGGGTTCAGGTAG
ATGATGGAGGCGGTTTCTGCGGAGGAGTGCTCGCCACGAGTACGGGATTT
GTCTTTGAAGCTCCTGGCGAATGTGACGAGGGTTCAGGTA
back to top