prot_H-paniculata_contig1783.4267.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig1783.4267.1
Unique Name	prot_H-paniculata_contig1783.4267.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	459

Homology

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BLAST of mRNA_H-paniculata_contig1783.4267.1 vs. uniprot
Match: D7FPC7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPC7_ECTSI)

HSP 1 Score: 392 bits (1007), Expect = 1.040e-128
Identity = 303/460 (65.87%), Postives = 357/460 (77.61%), Query Frame = 0

Query:    1 WYGVSLGTGNRVTELKLSDNGLAGTLSENLGGLEMMRYLNIGRNFLTGARPIPEGVWNLLNLEWLNATENALSGSMSPAMSNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDMLSFSLAVIFIIVPTSIIIASTCV-AQGRTRKRDIFLTILQLRVLSEALQSLKQQKETREYKSTRFVEACFETAPQMLIQTVALASAWNDQQAHSGDVIVFVSVLISVFSLSWEIMTAFDRGWAEEMVSERARQGRSWPGGASVHRWLVLILLWVFHVCEVGWRGISLAVLALALQGWAALVLLGAWGIRILVAKFTEASDLRTTKVVIKALAACLLDSVWDSRQAYILASCSTLVESSTFFVIAAVELNRGDTALEQALSETAWVAGSVYAVRCAVDILVRAPLHWG 459
            W+GVSLGTG RVTELKL DNGL GTL   LGGLEM+RYL++GR                                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      +D+LSF LAVIFI+VPTS+++AST   ++ R R + I LT+LQLR++ EA   LK+++ETR+YK+ +FVEACFE APQML+QTVA+ S WND++  + D  V  S++ SVFS+SWE M+A DRGWAEEMV ERARQG SWP GAS HRWLVL+ LWVFHVCEVG RG+SL++LAL L+GW+ALV+ G WG R+ +AK TEASDL+TTKV+IKALAACLLDS+WDS+ AYI AS  TL+ESSTFFV+A++EL   +T LE+ALSE AWVAGSVYA+R  +D+ +RAPLHWG
Sbjct:   19 WFGVSLGTGGRVTELKLVDNGLVGTLPNALGGLEMLRYLHLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLTG--SDVLSFVLAVIFIVVPTSVVVASTMSGSRERDRNKKILLTVLQLRLVWEARDGLKKRRETRDYKTAKFVEACFEAAPQMLLQTVAVVSLWNDKETDNSDAFVAFSIMNSVFSVSWETMSALDRGWAEEMVEERARQGTSWPCGASAHRWLVLLSLWVFHVCEVGLRGLSLSMLALTLRGWSALVMAGVWGARVGIAKATEASDLKTTKVLIKALAACLLDSIWDSKSAYIAASVCTLLESSTFFVVASLELRGENTPLEEALSEVAWVAGSVYALRFVLDLWLRAPLHWG 476

[Close]

BLAST of mRNA_H-paniculata_contig1783.4267.1 vs. uniprot
Match: A0A6H5L3J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3J2_9PHAE)

HSP 1 Score: 328 bits (842), Expect = 7.790e-104
Identity = 165/247 (66.80%), Postives = 202/247 (81.78%), Query Frame = 0

Query:  213 LRVLSEALQSLKQQKETREYKSTRFVEACFETAPQMLIQTVALASAWNDQQAHSGDVIVFVSVLISVFSLSWEIMTAFDRGWAEEMVSERARQGRSWPGGASVHRWLVLILLWVFHVCEVGWRGISLAVLALALQGWAALVLLGAWGIRILVAKFTEASDLRTTKVVIKALAACLLDSVWDSRQAYILASCSTLVESSTFFVIAAVELNRGDTALEQALSETAWVAGSVYAVRCAVDILVRAPLHWG 459
            LR++ EA   LK+ +ETR+YK+ +FVEACFE APQML+QTVA+ S WND++A + D+ V  S++ SVFS+SWE M+A DRGWAEEMV ERARQG SWP GAS HRWLVL+ LWVFHV   G RG SLAVLAL L+GW+ALV+ G WG R+ +AK TEASDL+TTKV+IKALAACLLDS+WDS+ AYI AS  TL+ESSTFFV+A++EL   +T LE+ALSE AWVAGSVYA+R  +D+ +RAPLHWG
Sbjct:  241 LRLVWEARDGLKKGRETRDYKTAKFVEACFEAAPQMLLQTVAVVSLWNDKEADNSDMFVAFSIMNSVFSVSWETMSALDRGWAEEMVEERARQGTSWPCGASAHRWLVLLSLWVFHV---GLRGSSLAVLALTLRGWSALVMAGVWGARVAIAKATEASDLKTTKVLIKALAACLLDSIWDSKSAYIAASVCTLLESSTFFVVASLELRGENTPLEEALSEVAWVAGSVYALRFVLDLWLRAPLHWG 484

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig1783.4267.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig1783.4267.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FPC7_ECTSI	1.040e-128	65.87	Hypothetical leucine rich repeat protein n=1 Tax=E...	[more]
A0A6H5L3J2_9PHAE	7.790e-104	66.80	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018629	XK-related protein	PFAM	PF09815	XK-related	coord: 172..415 e-value: 4.5E-11 score: 42.4
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 79..178 e-value: 1.4E-24 score: 88.4
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 1..78 e-value: 4.3E-16 score: 60.9
None	No IPR available	PANTHER	PTHR46662:SF6		coord: 11..102 coord: 51..171
None	No IPR available	PANTHER	PTHR46662	FAMILY NOT NAMED	coord: 11..102
None	No IPR available	PANTHER	PTHR46662	FAMILY NOT NAMED	coord: 51..171
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 328..338
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 397..418
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 173..197
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 339..364
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 290..308
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 198..268
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..172
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 419..459
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 365..396
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 309..327
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 269..289
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 10..175
None	No IPR available	TMHMM	TMhelix		coord: 308..330
None	No IPR available	TMHMM	TMhelix		coord: 175..197
None	No IPR available	TMHMM	TMhelix		coord: 337..359
None	No IPR available	TMHMM	TMhelix		coord: 269..288

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig1783	contig	H-paniculata_contig1783:10716..16687 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig1783.4267.1	mRNA_H-paniculata_contig1783.4267.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig1783 10716..16687 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig1783.4267.1 ID=prot_H-paniculata_contig1783.4267.1|Name=mRNA_H-paniculata_contig1783.4267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=459bp
WYGVSLGTGNRVTELKLSDNGLAGTLSENLGGLEMMRYLNIGRNFLTGAR
PIPEGVWNLLNLEWLNATENALSGSMSPAMSNLTQLVELNLSSNRLSGCL
PREVCTMRALTTLQLSHNALTGSLPIEISNLTALVTLGLDHNCFTGQIPP
GVSGMRGLIELRLDHNALTGNDMLSFSLAVIFIIVPTSIIIASTCVAQGR
TRKRDIFLTILQLRVLSEALQSLKQQKETREYKSTRFVEACFETAPQMLI
QTVALASAWNDQQAHSGDVIVFVSVLISVFSLSWEIMTAFDRGWAEEMVS
ERARQGRSWPGGASVHRWLVLILLWVFHVCEVGWRGISLAVLALALQGWA
ALVLLGAWGIRILVAKFTEASDLRTTKVVIKALAACLLDSVWDSRQAYIL
ASCSTLVESSTFFVIAAVELNRGDTALEQALSETAWVAGSVYAVRCAVDI
LVRAPLHWG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR018629	XK-rel
IPR032675	LRR_dom_sf