mRNA_H-paniculata_contig1783.4267.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1783.4267.1 vs. uniprot
Match: D7FPC7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPC7_ECTSI) HSP 1 Score: 392 bits (1007), Expect = 1.040e-128 Identity = 303/460 (65.87%), Postives = 357/460 (77.61%), Query Frame = 1
Query: 1 WYGVSLGTGNRVTELKLSDNGLAGTLSENLGGLEMMRYLNIGRNFLTGARPIPEGVWNLLNLEWLNATENALSGSMSPAMSNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDMLSFSLAVIFIIVPTSIIIASTCV-AQGRTRKRDIFLTILQLRVLSEALQSLKQQKETREYKSTRFVEACFETAPQMLIQTVALASAWNDQQAHSGDVIVFVSVLISVFSLSWEIMTAFDRGWAEEMVSERARQGRSWPGGASVHRWLVLILLWVFHVCEVGWRGISLAVLALALQGWAALVLLGAWGIRILVAKFTEASDLRTTKVVIKALAACLLDSVWDSRQAYILASCSTLVESSTFFVIAAVELNRGDTALEQALSETAWVAGSVYAVRCAVDILVRAPLHWG 1377
W+GVSLGTG RVTELKL DNGL GTL LGGLEM+RYL++GR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +D+LSF LAVIFI+VPTS+++AST ++ R R + I LT+LQLR++ EA LK+++ETR+YK+ +FVEACFE APQML+QTVA+ S WND++ + D V S++ SVFS+SWE M+A DRGWAEEMV ERARQG SWP GAS HRWLVL+ LWVFHVCEVG RG+SL++LAL L+GW+ALV+ G WG R+ +AK TEASDL+TTKV+IKALAACLLDS+WDS+ AYI AS TL+ESSTFFV+A++EL +T LE+ALSE AWVAGSVYA+R +D+ +RAPLHWG
Sbjct: 19 WFGVSLGTGGRVTELKLVDNGLVGTLPNALGGLEMLRYLHLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLTG--SDVLSFVLAVIFIVVPTSVVVASTMSGSRERDRNKKILLTVLQLRLVWEARDGLKKRRETRDYKTAKFVEACFEAAPQMLLQTVAVVSLWNDKETDNSDAFVAFSIMNSVFSVSWETMSALDRGWAEEMVEERARQGTSWPCGASAHRWLVLLSLWVFHVCEVGLRGLSLSMLALTLRGWSALVMAGVWGARVGIAKATEASDLKTTKVLIKALAACLLDSIWDSKSAYIAASVCTLLESSTFFVVASLELRGENTPLEEALSEVAWVAGSVYALRFVLDLWLRAPLHWG 476
BLAST of mRNA_H-paniculata_contig1783.4267.1 vs. uniprot
Match: A0A6H5L3J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3J2_9PHAE) HSP 1 Score: 328 bits (842), Expect = 7.790e-104 Identity = 165/247 (66.80%), Postives = 202/247 (81.78%), Query Frame = 1
Query: 637 LRVLSEALQSLKQQKETREYKSTRFVEACFETAPQMLIQTVALASAWNDQQAHSGDVIVFVSVLISVFSLSWEIMTAFDRGWAEEMVSERARQGRSWPGGASVHRWLVLILLWVFHVCEVGWRGISLAVLALALQGWAALVLLGAWGIRILVAKFTEASDLRTTKVVIKALAACLLDSVWDSRQAYILASCSTLVESSTFFVIAAVELNRGDTALEQALSETAWVAGSVYAVRCAVDILVRAPLHWG 1377
LR++ EA LK+ +ETR+YK+ +FVEACFE APQML+QTVA+ S WND++A + D+ V S++ SVFS+SWE M+A DRGWAEEMV ERARQG SWP GAS HRWLVL+ LWVFHV G RG SLAVLAL L+GW+ALV+ G WG R+ +AK TEASDL+TTKV+IKALAACLLDS+WDS+ AYI AS TL+ESSTFFV+A++EL +T LE+ALSE AWVAGSVYA+R +D+ +RAPLHWG
Sbjct: 241 LRLVWEARDGLKKGRETRDYKTAKFVEACFEAAPQMLLQTVAVVSLWNDKEADNSDMFVAFSIMNSVFSVSWETMSALDRGWAEEMVEERARQGTSWPCGASAHRWLVLLSLWVFHV---GLRGSSLAVLALTLRGWSALVMAGVWGARVAIAKATEASDLKTTKVLIKALAACLLDSIWDSKSAYIAASVCTLLESSTFFVVASLELRGENTPLEEALSEVAWVAGSVYALRFVLDLWLRAPLHWG 484 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1783.4267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1783.4267.1 >prot_H-paniculata_contig1783.4267.1 ID=prot_H-paniculata_contig1783.4267.1|Name=mRNA_H-paniculata_contig1783.4267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=459bp WYGVSLGTGNRVTELKLSDNGLAGTLSENLGGLEMMRYLNIGRNFLTGARback to top mRNA from alignment at H-paniculata_contig1783:10716..16687+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1783.4267.1 ID=mRNA_H-paniculata_contig1783.4267.1|Name=mRNA_H-paniculata_contig1783.4267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5972bp|location=Sequence derived from alignment at H-paniculata_contig1783:10716..16687+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1783:10716..16687+ >mRNA_H-paniculata_contig1783.4267.1 ID=mRNA_H-paniculata_contig1783.4267.1|Name=mRNA_H-paniculata_contig1783.4267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2754bp|location=Sequence derived from alignment at H-paniculata_contig1783:10716..16687+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |