mRNA_H-paniculata_contig17827.4265.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17827.4265.1
Unique NamemRNA_H-paniculata_contig17827.4265.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17827.4265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17827contigH-paniculata_contig17827:2007..3554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1548
Cds size792
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929392.671335-CDS-H-paniculata_contig17827:2006..27981622929392.671335-CDS-H-paniculata_contig17827:2006..2798Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17827 2007..2798 +
1691480842.4430377-CDS-H-paniculata_contig17827:2006..27981691480842.4430377-CDS-H-paniculata_contig17827:2006..2798Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17827 2007..2798 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929392.6899915-UTR-H-paniculata_contig17827:2798..35541622929392.6899915-UTR-H-paniculata_contig17827:2798..3554Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17827 2799..3554 +
1691480842.4550185-UTR-H-paniculata_contig17827:2798..35541691480842.4550185-UTR-H-paniculata_contig17827:2798..3554Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17827 2799..3554 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17827.4265.1prot_H-paniculata_contig17827.4265.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17827 2007..2798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17827.4265.1

>prot_H-paniculata_contig17827.4265.1 ID=prot_H-paniculata_contig17827.4265.1|Name=mRNA_H-paniculata_contig17827.4265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=264bp
GVPTASASNSSNSSKDNIKRSSTTTAIIADSNFETNFAGGVGAGPGAAGG
SSQAQAQRARSRSKSPAFFDMDANTAEPRGGTVAAAAAAGGGGVGDASSR
SLGSTVERRSSPAPIFREKATVSSGSGGGGGSGGGDGGKNKTREELSKEI
PRKRVGGNGGLPCRAGDGGSGGGETNASKMSERTKQVGGRESSKLNGRER
SGSGGGKSFAREGAGVGGEEDRRGAERGSAYGKGDRDPSRGGRATKDGFS
AMEVDSGSVAGDR*
back to top

mRNA from alignment at H-paniculata_contig17827:2007..3554+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17827.4265.1 ID=mRNA_H-paniculata_contig17827.4265.1|Name=mRNA_H-paniculata_contig17827.4265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1548bp|location=Sequence derived from alignment at H-paniculata_contig17827:2007..3554+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGTACCCACAGCTTCCGCCAGCAACAGTAGCAACAGCAGTAAAGATAA
CATCAAGCGGTCATCAACAACAACAGCAATAATAGCTGACTCGAACTTCG
AAACGAATTTTGCAGGGGGAGTTGGTGCTGGTCCTGGTGCCGCTGGAGGA
AGCAGTCAAGCCCAAGCCCAGAGAGCCCGCTCGAGGTCAAAATCTCCCGC
CTTTTTCGACATGGATGCAAATACCGCCGAACCTCGTGGAGGCACCGTCG
CCGCCGCCGCGGCAGCAGGAGGGGGTGGGGTGGGGGATGCCAGCAGTCGG
TCCCTCGGTAGTACAGTGGAGCGGCGTTCGTCTCCTGCTCCTATATTTCG
GGAAAAAGCCACAGTGTCTTCTGGTAGCGGCGGCGGCGGCGGCAGCGGCG
GTGGCGATGGTGGAAAAAACAAGACGAGAGAAGAGCTCAGTAAGGAAATA
CCCCGAAAAAGAGTGGGCGGCAATGGTGGACTGCCCTGTAGGGCAGGTGA
TGGTGGTAGCGGCGGCGGCGAAACAAACGCTTCTAAAATGTCGGAGAGAA
CAAAACAGGTTGGAGGGAGAGAATCCTCAAAGCTTAACGGAAGGGAGCGT
TCAGGGTCTGGCGGAGGGAAGTCCTTCGCTCGAGAAGGCGCCGGGGTTGG
CGGTGAAGAGGACAGGAGAGGTGCGGAACGTGGCAGCGCTTATGGAAAAG
GAGACCGTGACCCGTCACGCGGTGGAAGGGCGACAAAGGATGGATTTTCT
GCCATGGAGGTGGACAGTGGTTCTGTGGCGGGAGATCGGTGATTGGCGTT
CGTGTATGTGTAGGATGTATTATGGGTTGGCGTGGGAGAATATGCTGAAG
TTAGGGGCGCGCTAAATCGTTTGGGTTGGTTCTGAAGATGAGCATATTTG
GCCGGTTCGATGGGTGAATCGGTTGATCGGTTCTCGATTTTCTTGATTTT
TTTGCCGTTGTGAATGCTTTGGTGGTTCTTCATATTGTTGAGATATATAT
GTAGATATATGCTGGTAGGTTATAATACACAGCGCGCGAGGATTGTGAGA
GGAAATAACGCGCCAACTCTATTTGCTGGTTTGTCGAGTCGGGTGTCAAA
TTGGAACTCCGTTTGAAACGTACATTAGTTTGCTGTGTGTGGTATGGTCA
GCCCAAGACTTAAGTTCCGGAACAGCTCAGATGTTTTTTTTTGTGTTTTT
TCTGTTGAATCTATTTTATATTTGGAGCGGTAATATCACCAGTTCATTCA
CCCCCTATCGCAGTAGGCCTTGGCGATGATACCATTTGAAGACAGCGACA
GACGAACCCGGGCTAGTACTACTAGCTGGAGCATCCCATCCGTTCCTCTT
TCTTGTCTCTTTTCTCTTTTACCTGCAACGCGCCGATATTACTCGTGGAG
TTTAGGTAACGTAGTCTGTAGGTAAGAATCGCACATGGTTCGTTTGTAAA
GTTTGAAATGCGGAAATGGTGAAAAATACAGAGTCATGATAATATGGATA
AAGCACAAGCAACGGTAACTTAAACTTGTAGGAACCGGATTTCGTAAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig17827:2007..3554+

>mRNA_H-paniculata_contig17827.4265.1 ID=mRNA_H-paniculata_contig17827.4265.1|Name=mRNA_H-paniculata_contig17827.4265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1584bp|location=Sequence derived from alignment at H-paniculata_contig17827:2007..3554+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGTACCCACAGCTTCCGCCAGCAACAGTAGCAACAGCAGTAAAGATAA
CATCAAGCGGTCATCAACAACAACAGCAATAATAGCTGACTCGAACTTCG
AAACGAATTTTGCAGGGGGAGTTGGTGCTGGTCCTGGTGCCGCTGGAGGA
AGCAGTCAAGCCCAAGCCCAGAGAGCCCGCTCGAGGTCAAAATCTCCCGC
CTTTTTCGACATGGATGCAAATACCGCCGAACCTCGTGGAGGCACCGTCG
CCGCCGCCGCGGCAGCAGGAGGGGGTGGGGTGGGGGATGCCAGCAGTCGG
TCCCTCGGTAGTACAGTGGAGCGGCGTTCGTCTCCTGCTCCTATATTTCG
GGAAAAAGCCACAGTGTCTTCTGGTAGCGGCGGCGGCGGCGGCAGCGGCG
GTGGCGATGGTGGAAAAAACAAGACGAGAGAAGAGCTCAGTAAGGAAATA
CCCCGAAAAAGAGTGGGCGGCAATGGTGGACTGCCCTGTAGGGCAGGTGA
TGGTGGTAGCGGCGGCGGCGAAACAAACGCTTCTAAAATGTCGGAGAGAA
CAAAACAGGTTGGAGGGAGAGAATCCTCAAAGCTTAACGGAAGGGAGCGT
TCAGGGTCTGGCGGAGGGAAGTCCTTCGCTCGAGAAGGCGCCGGGGTTGG
CGGTGAAGAGGACAGGAGAGGTGCGGAACGTGGCAGCGCTTATGGAAAAG
GAGACCGTGACCCGTCACGCGGTGGAAGGGCGACAAAGGATGGATTTTCT
GCCATGGAGGTGGACAGTGGTTCTGTGGCGGGAGATCGGTGAGGTGTACC
CACAGCTTCCGCCAGCAACAGTAGCAACAGCAGTAAAGATAACATCAAGC
GGTCATCAACAACAACAGCAATAATAGCTGACTCGAACTTCGAAACGAAT
TTTGCAGGGGGAGTTGGTGCTGGTCCTGGTGCCGCTGGAGGAAGCAGTCA
AGCCCAAGCCCAGAGAGCCCGCTCGAGGTCAAAATCTCCCGCCTTTTTCG
ACATGGATGCAAATACCGCCGAACCTCGTGGAGGCACCGTCGCCGCCGCC
GCGGCAGCAGGAGGGGGTGGGGTGGGGGATGCCAGCAGTCGGTCCCTCGG
TAGTACAGTGGAGCGGCGTTCGTCTCCTGCTCCTATATTTCGGGAAAAAG
CCACAGTGTCTTCTGGTAGCGGCGGCGGCGGCGGCAGCGGCGGTGGCGAT
GGTGGAAAAAACAAGACGAGAGAAGAGCTCAGTAAGGAAATACCCCGAAA
AAGAGTGGGCGGCAATGGTGGACTGCCCTGTAGGGCAGGTGATGGTGGTA
GCGGCGGCGGCGAAACAAACGCTTCTAAAATGTCGGAGAGAACAAAACAG
GTTGGAGGGAGAGAATCCTCAAAGCTTAACGGAAGGGAGCGTTCAGGGTC
TGGCGGAGGGAAGTCCTTCGCTCGAGAAGGCGCCGGGGTTGGCGGTGAAG
AGGACAGGAGAGGTGCGGAACGTGGCAGCGCTTATGGAAAAGGAGACCGT
GACCCGTCACGCGGTGGAAGGGCGACAAAGGATGGATTTTCTGCCATGGA
GGTGGACAGTGGTTCTGTGGCGGGAGATCGGTGA
back to top