mRNA_H-paniculata_contig17821.4263.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17821.4263.1
Unique NamemRNA_H-paniculata_contig17821.4263.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17821.4263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17821contigH-paniculata_contig17821:1841..2809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size969
Cds size969
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929392.622737-CDS-H-paniculata_contig17821:1840..28091622929392.622737-CDS-H-paniculata_contig17821:1840..2809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17821 1841..2809 -
1691480842.4317937-CDS-H-paniculata_contig17821:1840..28091691480842.4317937-CDS-H-paniculata_contig17821:1840..2809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17821 1841..2809 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17821.4263.1prot_H-paniculata_contig17821.4263.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17821 1841..2809 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17821.4263.1

>prot_H-paniculata_contig17821.4263.1 ID=prot_H-paniculata_contig17821.4263.1|Name=mRNA_H-paniculata_contig17821.4263.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=323bp
MSSALANGELSAAARVFIPTNLSPAKPLMSSASGGTPGARRPGGGGGSVA
PPTSTNTTSMSSAAAAGLTPPRPPVPSGGASRSSPVKAVGGGGGVGLPLA
ADSGLFGASWGSIAAGVGVGVNGNSTGSGAVAGDQNGGSGVKSLVGAGGD
LSDPTAGGSLWGGVGLRVGGGVPSGAQAIWGGASLLETALAGNGGGGGGT
DALSLLLPPTADSGVSDSGGGTGGGTGLDAFGLSPWGVSAMPKAGTGGGG
GGGGGGGAAGVELVGDDFAGGLGASLESLQLDDSDNTVPSLSGGKRRQQR
DVFGAPRASGAEGRSGGGLSWG*
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mRNA from alignment at H-paniculata_contig17821:1841..2809-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17821.4263.1 ID=mRNA_H-paniculata_contig17821.4263.1|Name=mRNA_H-paniculata_contig17821.4263.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=969bp|location=Sequence derived from alignment at H-paniculata_contig17821:1841..2809- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCAGCGCGCTGGCGAACGGTGAGCTCTCGGCGGCCGCTCGCGTTTT
TATCCCAACAAATCTGTCTCCTGCAAAACCGCTCATGTCTTCTGCAAGCG
GCGGTACTCCCGGCGCGCGCCGACCCGGCGGGGGCGGAGGCAGTGTAGCG
CCGCCGACGAGTACCAACACTACTTCGATGTCGTCCGCCGCCGCGGCTGG
TTTAACTCCTCCTCGACCCCCCGTGCCCAGCGGTGGCGCGTCGAGGTCTT
CGCCGGTCAAGGCGGTCGGAGGCGGTGGTGGGGTGGGGTTACCGCTGGCC
GCCGACAGCGGGCTGTTCGGCGCCTCGTGGGGGAGTATAGCAGCTGGTGT
GGGCGTGGGCGTGAATGGAAACAGCACCGGAAGCGGCGCGGTGGCGGGTG
ACCAAAACGGCGGCAGCGGCGTCAAGAGCTTAGTCGGAGCGGGCGGAGAC
TTATCAGATCCAACCGCTGGCGGAAGTCTTTGGGGCGGCGTCGGCCTGAG
AGTGGGCGGAGGAGTTCCGAGCGGCGCTCAGGCGATATGGGGTGGTGCTT
CTCTCTTGGAAACTGCGCTCGCCGGCAATGGTGGTGGTGGTGGTGGAACC
GATGCATTGTCGCTCCTCTTGCCCCCAACCGCGGATTCGGGGGTGTCGGA
TAGCGGGGGAGGAACGGGCGGTGGTACAGGTCTGGACGCATTCGGCTTGT
CGCCGTGGGGTGTTTCAGCGATGCCAAAGGCTGGCACCGGTGGGGGGGGG
GGGGGGGGGGGGGGGGGCGGAGCAGCGGGGGTAGAATTAGTTGGCGATGA
TTTCGCCGGCGGATTAGGCGCATCGCTGGAAAGTTTGCAATTGGACGATT
CGGATAATACCGTTCCCTCTTTGAGCGGAGGCAAACGGAGGCAGCAAAGG
GACGTGTTCGGCGCGCCGAGAGCGAGTGGTGCAGAGGGGCGTTCAGGCGG
CGGGTTGAGCTGGGGTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig17821:1841..2809-

>mRNA_H-paniculata_contig17821.4263.1 ID=mRNA_H-paniculata_contig17821.4263.1|Name=mRNA_H-paniculata_contig17821.4263.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1938bp|location=Sequence derived from alignment at H-paniculata_contig17821:1841..2809- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCAGCGCGCTGGCGAACGGTGAGCTCTCGGCGGCCGCTCGCGTTTT
TATCCCAACAAATCTGTCTCCTGCAAAACCGCTCATGTCTTCTGCAAGCG
GCGGTACTCCCGGCGCGCGCCGACCCGGCGGGGGCGGAGGCAGTGTAGCG
CCGCCGACGAGTACCAACACTACTTCGATGTCGTCCGCCGCCGCGGCTGG
TTTAACTCCTCCTCGACCCCCCGTGCCCAGCGGTGGCGCGTCGAGGTCTT
CGCCGGTCAAGGCGGTCGGAGGCGGTGGTGGGGTGGGGTTACCGCTGGCC
GCCGACAGCGGGCTGTTCGGCGCCTCGTGGGGGAGTATAGCAGCTGGTGT
GGGCGTGGGCGTGAATGGAAACAGCACCGGAAGCGGCGCGGTGGCGGGTG
ACCAAAACGGCGGCAGCGGCGTCAAGAGCTTAGTCGGAGCGGGCGGAGAC
TTATCAGATCCAACCGCTGGCGGAAGTCTTTGGGGCGGCGTCGGCCTGAG
AGTGGGCGGAGGAGTTCCGAGCGGCGCTCAGGCGATATGGGGTGGTGCTT
CTCTCTTGGAAACTGCGCTCGCCGGCAATGGTGGTGGTGGTGGTGGAACC
GATGCATTGTCGCTCCTCTTGCCCCCAACCGCGGATTCGGGGGTGTCGGA
TAGCGGGGGAGGAACGGGCGGTGGTACAGGTCTGGACGCATTCGGCTTGT
CGCCGTGGGGTGTTTCAGCGATGCCAAAGGCTGGCACCGGTGGGGGGGGG
GGGGGGGGGGGGGGGGGCGGAGCAGCGGGGGTAGAATTAGTTGGCGATGA
TTTCGCCGGCGGATTAGGCGCATCGCTGGAAAGTTTGCAATTGGACGATT
CGGATAATACCGTTCCCTCTTTGAGCGGAGGCAAACGGAGGCAGCAAAGG
GACGTGTTCGGCGCGCCGAGAGCGAGTGGTGCAGAGGGGCGTTCAGGCGG
CGGGTTGAGCTGGGGTTGAATGTCCAGCGCGCTGGCGAACGGTGAGCTCT
CGGCGGCCGCTCGCGTTTTTATCCCAACAAATCTGTCTCCTGCAAAACCG
CTCATGTCTTCTGCAAGCGGCGGTACTCCCGGCGCGCGCCGACCCGGCGG
GGGCGGAGGCAGTGTAGCGCCGCCGACGAGTACCAACACTACTTCGATGT
CGTCCGCCGCCGCGGCTGGTTTAACTCCTCCTCGACCCCCCGTGCCCAGC
GGTGGCGCGTCGAGGTCTTCGCCGGTCAAGGCGGTCGGAGGCGGTGGTGG
GGTGGGGTTACCGCTGGCCGCCGACAGCGGGCTGTTCGGCGCCTCGTGGG
GGAGTATAGCAGCTGGTGTGGGCGTGGGCGTGAATGGAAACAGCACCGGA
AGCGGCGCGGTGGCGGGTGACCAAAACGGCGGCAGCGGCGTCAAGAGCTT
AGTCGGAGCGGGCGGAGACTTATCAGATCCAACCGCTGGCGGAAGTCTTT
GGGGCGGCGTCGGCCTGAGAGTGGGCGGAGGAGTTCCGAGCGGCGCTCAG
GCGATATGGGGTGGTGCTTCTCTCTTGGAAACTGCGCTCGCCGGCAATGG
TGGTGGTGGTGGTGGAACCGATGCATTGTCGCTCCTCTTGCCCCCAACCG
CGGATTCGGGGGTGTCGGATAGCGGGGGAGGAACGGGCGGTGGTACAGGT
CTGGACGCATTCGGCTTGTCGCCGTGGGGTGTTTCAGCGATGCCAAAGGC
TGGCACCGGTGGGGGGGGGGGGGGGGGGGGGGGGGGCGGAGCAGCGGGGG
TAGAATTAGTTGGCGATGATTTCGCCGGCGGATTAGGCGCATCGCTGGAA
AGTTTGCAATTGGACGATTCGGATAATACCGTTCCCTCTTTGAGCGGAGG
CAAACGGAGGCAGCAAAGGGACGTGTTCGGCGCGCCGAGAGCGAGTGGTG
CAGAGGGGCGTTCAGGCGGCGGGTTGAGCTGGGGTTGA
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