mRNA_H-paniculata_contig17818.4261.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17818.4261.1
Unique NamemRNA_H-paniculata_contig17818.4261.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17818.4261.1 vs. uniprot
Match: D7G6T7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T7_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 8.250e-20
Identity = 45/86 (52.33%), Postives = 53/86 (61.63%), Query Frame = 2 
Query:  137 FLLVCGVGWAAAHPHCI--DKPTYAEGELTFCPAAQDGVCCNDLEEAVVVERFNGAGPLTPECADYYKQVVCAECGSFSGHLFERL 388
             LL   +   A+HP C   D+PT  +  L FCP AQ G CC D EEA+V  R    G LT +C D YKQVVC  CGS+SGHL+ERL
Sbjct:   13 MLLGALITLCASHPLCYVDDRPTDPDEILEFCPEAQSGACCTDAEEALVQLRHEAVGNLTGDCDDLYKQVVCGVCGSYSGHLYERL 98
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BLAST of mRNA_H-paniculata_contig17818.4261.1 vs. uniprot
Match: UPI0018D629DF (HHIP-like protein 2 isoform X2 n=2 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D629DF)

HSP 1 Score: 52.8 bits (125), Expect = 2.130e-5
Identity = 28/83 (33.73%), Postives = 41/83 (49.40%), Query Frame = 2 
Query:  170 AHPHCIDK----PTYAEGELTFCPAAQDGVCCN---DLE-----EAVVVERFNGAGPLTPECADYYKQVVCAECGSFSGHLFE 382
            AHP C+D         E +  FC    +  CC    DLE     E +V E     GPLT +C ++ K+++C EC  ++ HLF+
Sbjct:   32 AHPQCLDFFAPFDHNQEQQPEFCTLYDEFGCCTKEMDLEIRQNFEDIVAEYKGIHGPLTTDCLNFLKEILCQECSPYAAHLFD 114
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BLAST of mRNA_H-paniculata_contig17818.4261.1 vs. uniprot
Match: UPI0018D60067 (HHIP-like protein 2 isoform X1 n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D60067)

HSP 1 Score: 52.8 bits (125), Expect = 2.140e-5
Identity = 28/83 (33.73%), Postives = 41/83 (49.40%), Query Frame = 2 
Query:  170 AHPHCIDK----PTYAEGELTFCPAAQDGVCCN---DLE-----EAVVVERFNGAGPLTPECADYYKQVVCAECGSFSGHLFE 382
            AHP C+D         E +  FC    +  CC    DLE     E +V E     GPLT +C ++ K+++C EC  ++ HLF+
Sbjct:   32 AHPQCLDFFAPFDHNQEQQPEFCTLYDEFGCCTKEMDLEIRQNFEDIVAEYKGIHGPLTTDCLNFLKEILCQECSPYAAHLFD 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17818.4261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G6T7_ECTSI8.250e-2052.33WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
UPI0018D629DF2.130e-533.73HHIP-like protein 2 isoform X2 n=2 Tax=Patiria min... [more]
UPI0018D600672.140e-533.73HHIP-like protein 2 isoform X1 n=1 Tax=Patiria min... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17818contigH-paniculata_contig17818:3222..3914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue1.4e-16
Seed eggNOG ortholog2880.D7G6T7
KEGG rclassRC00194
KEGG koko:K04618,ko:K08254,ko:K11244,ko:K20929
KEGG ReactionR01098
KEGG Pathwayko00052,ko04011,ko04139,map00052,map04011,map04139
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC1.1.3.9,1.2.3.15,3.2.1.59
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size390
Cds size264
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17818.4261.1prot_H-paniculata_contig17818.4261.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17818 3346..3914 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929392.0824494-UTR-H-paniculata_contig17818:3221..33451622929392.0824494-UTR-H-paniculata_contig17818:3221..3345Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17818 3222..3345 +
1691480842.267027-UTR-H-paniculata_contig17818:3221..33451691480842.267027-UTR-H-paniculata_contig17818:3221..3345Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17818 3222..3345 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929392.097329-CDS-H-paniculata_contig17818:3345..35581622929392.097329-CDS-H-paniculata_contig17818:3345..3558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17818 3346..3558 +
1691480842.2774065-CDS-H-paniculata_contig17818:3345..35581691480842.2774065-CDS-H-paniculata_contig17818:3345..3558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17818 3346..3558 +
1622929392.1250658-CDS-H-paniculata_contig17818:3863..39141622929392.1250658-CDS-H-paniculata_contig17818:3863..3914Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17818 3864..3914 +
1691480842.285112-CDS-H-paniculata_contig17818:3863..39141691480842.285112-CDS-H-paniculata_contig17818:3863..3914Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17818 3864..3914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17818.4261.1

>prot_H-paniculata_contig17818.4261.1 ID=prot_H-paniculata_contig17818.4261.1|Name=mRNA_H-paniculata_contig17818.4261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
MRTSFLLVCGVGWAAAHPHCIDKPTYAEGELTFCPAAQDGVCCNDLEEAV
VVERFNGAGPLTPECADYYKQVVCAECGSFSGHLFERL
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mRNA from alignment at H-paniculata_contig17818:3222..3914+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17818.4261.1 ID=mRNA_H-paniculata_contig17818.4261.1|Name=mRNA_H-paniculata_contig17818.4261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=693bp|location=Sequence derived from alignment at H-paniculata_contig17818:3222..3914+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTATTTCCACGTGTAAATAGTCGGCACGTCTACCTTGTCATCATTTCT
ATCATATAGTTCAGGCCTAGCACAAGGGGGATAAATTGGATACGCTGGGG
TCTTAAGCTCCTGCTTTGCCAACGATGCGCACCTCCTTCCTTCTAGTGTG
TGGAGTCGGATGGGCGGCAGCGCATCCACACTGTATTGACAAGCCGACAT
ACGCTGAAGGAGAGTTGACTTTCTGTCCCGCCGCGCAAGATGGGGTCTGC
TGCAATGACCTAGAGGAGGCCGTAGTAGTGGAGCGCTTCAACGGTGCTGG
TCCTCTCACCCCCGAATGTGCCGACTACTACAAACAGGTTCGCGTGATTC
CGGTGCTTGCACGTTGCTACTGTTGGTATTTTATGTTTCTTGCATCGCCG
ACCTTACTGTAGCTGTATCCACTGTAAACATGTAGAATTATATCTGTTCA
CATTTTTTTCAATATCTGTACACAATGAGCACGTAAATATCCAACGACGC
AAACCTCCATCGCGAATCCGCTGCGTGTGCGTGGTACTCCGAGATCTTTT
GCCCAAGTTGGTGTGGTGCCCATGTACATGATATCGACTAGTGCAGTGGA
CGGGAGTGAGATCCGCAATTTTGATTTCCCCCATCATCCTAGGTGGTGTG
TGCGGAATGCGGTTCTTTCAGCGGGCATCTCTTTGAGCGACTG
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Coding sequence (CDS) from alignment at H-paniculata_contig17818:3222..3914+

>mRNA_H-paniculata_contig17818.4261.1 ID=mRNA_H-paniculata_contig17818.4261.1|Name=mRNA_H-paniculata_contig17818.4261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig17818:3222..3914+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCACCTCCTTCCTTCTAGTGTGTGGAGTCGGATGGGCGGCAGCGCA
TCCACACTGTATTGACAAGCCGACATACGCTGAAGGAGAGTTGACTTTCT
GTCCCGCCGCGCAAGATGGGGTCTGCTGCAATGACCTAGAGGAGGCCGTA
GTAGTGGAGCGCTTCAACGGTGCTGGTCCTCTCACCCCCGAATGTGCCGA
CTACTACAAACAGATGCGCACCTCCTTCCTTCTAGTGTGTGGAGTCGGAT
GGGCGGCAGCGCATCCACACTGTATTGACAAGCCGACATACGCTGAAGGA
GAGTTGACTTTCTGTCCCGCCGCGCAAGATGGGGTCTGCTGCAATGACCT
AGAGGAGGCCGTAGTAGTGGAGCGCTTCAACGGTGCTGGTCCTCTCACCC
CCGAATGTGCCGACTACTACAAACAGGTGGTGTGTGCGGAATGCGGTTCT
TTCAGCGGGCATCTCTTTGAGCGACTGGTGGTGTGTGCGGAATGCGGTTC
TTTCAGCGGGCATCTCTTTGAGCGACTG
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