mRNA_H-paniculata_contig1780.4257.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1780.4257.1
Unique NamemRNA_H-paniculata_contig1780.4257.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1780.4257.1 vs. uniprot
Match: D7G1S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1S9_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 6.480e-43
Identity = 98/191 (51.31%), Postives = 125/191 (65.45%), Query Frame = 1 
Query:  292 PGGLGVVLDELSGWDHD--------ELVSAMGQGVGIPLRLS--WAEALVERFEA---KGMAIEAVKD-GLRGSGSARGKLDVIAFVEFLRLKTFSISVMTPFGLVELSVQDPLLPLGGLREMLVKKMFWRQHNCNVRRSEFQVRRSDRNNFSISRHYGSLPLDTESPEQRRKLVADVLRPGELLFVTDRL 822
            P G G V+  LS  D +        E VSA  +  G+ +++   W + L  +F A   +G A   V+  G  G G+    LD+ A  +FLR K FS+SVMTPFGLVELS++D  L LG LRE+++ KMFWRQHNC       QVRRSDR+NF++SR+YG+LPLDTES  QRR+LV DVLRPGELLFVTDR+
Sbjct:  193 PRGGGFVVRALSSVDGNGSGTLSPAEFVSAASKVAGLDMQIEQEWGDVLATKFAATTHRGEAGGGVRWLGGSGEGTDTHALDIAALDDFLRPKHFSLSVMTPFGLVELSLEDQFLTLGDLREVIINKMFWRQHNC-------QVRRSDRDNFTLSRYYGTLPLDTESAGQRRRLVLDVLRPGELLFVTDRV 376
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1780.4257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1S9_ECTSI6.480e-4351.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1780contigH-paniculata_contig1780:2562..5195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_004280.1
Exons5
Model size858
Cds size855
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1780.4257.1prot_H-paniculata_contig1780.4257.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1780 2564..5195 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929391.2116454-CDS-H-paniculata_contig1780:2563..26301622929391.2116454-CDS-H-paniculata_contig1780:2563..2630Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1780 2564..2630 -
1691480842.060822-CDS-H-paniculata_contig1780:2563..26301691480842.060822-CDS-H-paniculata_contig1780:2563..2630Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1780 2564..2630 -
1622929391.6614623-CDS-H-paniculata_contig1780:3763..38911622929391.6614623-CDS-H-paniculata_contig1780:3763..3891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1780 3764..3891 -
1691480842.0706902-CDS-H-paniculata_contig1780:3763..38911691480842.0706902-CDS-H-paniculata_contig1780:3763..3891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1780 3764..3891 -
1622929391.6759524-CDS-H-paniculata_contig1780:4300..44011622929391.6759524-CDS-H-paniculata_contig1780:4300..4401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1780 4301..4401 -
1691480842.0790782-CDS-H-paniculata_contig1780:4300..44011691480842.0790782-CDS-H-paniculata_contig1780:4300..4401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1780 4301..4401 -
1622929391.6917884-CDS-H-paniculata_contig1780:4612..48281622929391.6917884-CDS-H-paniculata_contig1780:4612..4828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1780 4613..4828 -
1691480842.0908036-CDS-H-paniculata_contig1780:4612..48281691480842.0908036-CDS-H-paniculata_contig1780:4612..4828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1780 4613..4828 -
1622929391.7146137-CDS-H-paniculata_contig1780:4852..51951622929391.7146137-CDS-H-paniculata_contig1780:4852..5195Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1780 4853..5195 -
1691480842.1005685-CDS-H-paniculata_contig1780:4852..51951691480842.1005685-CDS-H-paniculata_contig1780:4852..5195Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1780 4853..5195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1780.4257.1

>prot_H-paniculata_contig1780.4257.1 ID=prot_H-paniculata_contig1780.4257.1|Name=mRNA_H-paniculata_contig1780.4257.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=285bp
GRVRRTSAQFSSTLQPQETKTQYVTGGRMIPASTRLFWSSRDRPAGRTIK
DGPTPRRNTSRGESATARLIGNTNSARSSSAGTAYSSTSTKASRAGLPGG
LGVVLDELSGWDHDELVSAMGQGVGIPLRLSWAEALVERFEAKGMAIEAV
KDGLRGSGSARGKLDVIAFVEFLRLKTFSISVMTPFGLVELSVQDPLLPL
GGLREMLVKKMFWRQHNCNVRRSEFQVRRSDRNNFSISRHYGSLPLDTES
PEQRRKLVADVLRPGELLFVTDRLPPRKRGDPRVI
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mRNA from alignment at H-paniculata_contig1780:2562..5195-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1780.4257.1 ID=mRNA_H-paniculata_contig1780.4257.1|Name=mRNA_H-paniculata_contig1780.4257.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2634bp|location=Sequence derived from alignment at H-paniculata_contig1780:2562..5195- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAGAGTCCGACGCACGTCTGCACAGTTTTCATCGACCTTACAGCCGCA
AGAGACAAAGACACAGTACGTTACCGGGGGGCGAATGATACCGGCGTCAA
CGCGATTGTTCTGGTCGTCCCGAGATAGACCTGCTGGCAGAACAATCAAG
GACGGGCCTACTCCGAGGAGGAATACATCGCGTGGTGAAAGTGCGACAGC
AAGACTGATCGGTAACACAAATAGCGCCCGGAGCTCCTCGGCCGGCACGG
CGTATTCTTCCACCTCGACAAAGGCATCGAGGGCAGGGCTGCCGGGGGGT
CTGGGGGTCGTACTCGACGAGTTGTCGGGTTGGGATCATGATGGTTCTGG
AGCTGTTTCGGCTACAGAATTGGTATCCGCCATGGGTCAGGGCGTGGGTA
TACCCTTGCGATTATCGTGGGCAGAGGCTCTGGTAGAGAGGTTTGAGGCT
AAAGGAATGGCAATAGAGGCCGTGAAGGACGGGTTGCGAGGGAGTGGAAG
CGCTCGTGGAAAGCTGGACGTAATTGCGTTCGTGGAGTTTTTGCGGCTCA
AAACCTTCTCGATCAGCGTCATGACTCCCTTCGGTAAGTGTGACTGTTAA
GCGAGCGAATCAAAATTCCTAGAATATTCTGCCCTGTTGACACCTGCAGT
TGATGGCGTGTCATGCTTAAAACATAGAATGAACGACGGCGAAAGTCCCT
GAATAAAAGGTCTGGTCCACACATTGTGTAAGCGGAAGCTCCGTGTTATA
AACGTGCTACCCTCTCTTCGCTGCGGGTACGAAACCTGCGTTAGGGCTGG
TGGAACTGTCGGTACAAGACCCGCTGCTCCCTCTTGGAGGACTGCGTGAA
ATGCTGGTGAAGAAGATGTTCTGGCGTCAGCATAATTGCAACGTGAGATT
AAGATGGGACTAGAAAAAACAAACGCATGGCTCCGAGTGCTGGGGTTTAG
GGCGAAGGGATAGCGATGGCCCGCACTTCACAAAAATCGTGTGTGCTGTA
GCAAAAGGCGGGAAATATTAGCTCCTAGCGCTCCACGTCGTCACTATCTA
CTTGTAGTAATTCATCTTCAAAATTGTTATATACTTGGTCATGATTGATT
TATACGATGGCTCCGGCAGTAAATATCCCAACTAAGTGGCGTACTATCGG
TAGGGGTTTAGTATGTTCTACTTACACCACTTATCTCGTGGAAATTATTT
TCGTTTCTTCCGATAAACAGTTGATGGGAACCGATTTTGAAATCGTGGGT
CTTGCTTTAGGTGCATCTTTTCGTCACCGAAATCTATAAATACGTGCTTC
TCCGCGTCGCTCCGAATTCCAGGTACGGCGATCAGACAGAAACAACTTCT
CTATTTCACGCCATTACGGCTCTCTGCCTCTGGACACGGAGTCACCTGAA
CAACGCCGGAAGCTCGTAGCAGACGTGCTAAGGTGGGGTTCTGAGGAGAC
CTCGCGTCTCGGGTCTGTTGTATGTGGCTGGAACGAAAACCATGTCATGC
AGACACACGCCCGAGAAGGGATAAACAGTATGACAGCGGACATGTGTCGT
ACCTACCAATGGTGTATAGCCCAAGTCCAAAATATAACGTCTGGATGAAG
ACGGGTGCAACTGCGGTAAACCCACCTCGATATCGATTACCGCTCGTCGT
GCAGTCCTCCACTTACCCTTCTGGGTATATTTATATATACACTGACCAAT
CGTGAAGAGTGTAACTATCAAGCTGATGGGAAGGTACTGGACAGACTCGG
CTATAATCAATGACTATATATCTCCCACCAGAGGTACATCTGGTGCGTAC
CGTAGTAGGAGTTTGTCGGCAGGCTGGTAGACAGATCAGGCGTGCCTTCT
TGTACGATGTGTCCTAAATTGTGGTGTCTCAAAGACACGCCTTGAGTTCC
ACATGCAGCTGCGGGCTAGAGTACAGCGTACTATTACTAGTGTTGTACCT
TCTAGTGGAATTAATTGATAATGACACGAACGGCACGTGGCAACATTCCT
CGTGCAGTCCGCCATCGTGAGCAGCAAGTAACTGAGCTTCTGTGACGTGG
AGGGTTGAATATCGACAAAAAATATCAGTTGAAATCGGTAGCGGGCAAAA
AATTGCTTGAGAGGTCTAGTGCAAAAAAGAGGTAGAGAGACGGGCGGGAA
GCAGGCTAGCGATCGCTGTCAGACAGGTACCCAAAAGAGATACAACAAGC
TATTCATGAATTGTTCTTACCAAAAAACTATTTCTTACGTGTTCATCCAG
TGTTTATGATATCTCCTTAACGCACGTGTGTACACAAGTTTCAGCACCAC
AAAATTACCTACGAATACACAAGTTAGTAGTAGACTGCCATAAATCCTTC
CATCCAACTTCTTTATCAGGGCTTTGTCATATTGATCCCTTAAGCTAGAG
GTATGAGTGAACCCAATATTTATCGCTTTAGGGTGCTTTTAAGACCGTCC
CTATCAGAACGTGCCCCAAATATTTGCTTGTTTTTTTACCTGTTTGAGGT
CACCCTGTTGAGGAACATGAGAGCATCCCTCCTCCATCTCGGATACCTGC
CAACGTGTCTTTCAGACCAGGAGAGCTCTTGTTTGTCACGGACCGTCTGC
CACCCAGGAAGAGGGGCGATCCGCGAGTCATTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig1780:2562..5195-

>mRNA_H-paniculata_contig1780.4257.1 ID=mRNA_H-paniculata_contig1780.4257.1|Name=mRNA_H-paniculata_contig1780.4257.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1710bp|location=Sequence derived from alignment at H-paniculata_contig1780:2562..5195- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAGAGTCCGACGCACGTCTGCACAGTTTTCATCGACCTTACAGCCGCA
AGAGACAAAGACACAGTACGTTACCGGGGGGCGAATGATACCGGCGTCAA
CGCGATTGTTCTGGTCGTCCCGAGATAGACCTGCTGGCAGAACAATCAAG
GACGGGCCTACTCCGAGGAGGAATACATCGCGTGGTGAAAGTGCGACAGC
AAGACTGATCGGTAACACAAATAGCGCCCGGAGCTCCTCGGCCGGCACGG
CGTATTCTTCCACCTCGACAAAGGCATCGAGGGCAGGGCTGCCGGGGGGT
CTGGGGGTCGTACTCGACGAGTTGTCGGGTTGGGATCATGATGGGCAGAG
TCCGACGCACGTCTGCACAGTTTTCATCGACCTTACAGCCGCAAGAGACA
AAGACACAGTACGTTACCGGGGGGCGAATGATACCGGCGTCAACGCGATT
GTTCTGGTCGTCCCGAGATAGACCTGCTGGCAGAACAATCAAGGACGGGC
CTACTCCGAGGAGGAATACATCGCGTGGTGAAAGTGCGACAGCAAGACTG
ATCGGTAACACAAATAGCGCCCGGAGCTCCTCGGCCGGCACGGCGTATTC
TTCCACCTCGACAAAGGCATCGAGGGCAGGGCTGCCGGGGGGTCTGGGGG
TCGTACTCGACGAGTTGTCGGGTTGGGATCATGATGAATTGGTATCCGCC
ATGGGTCAGGGCGTGGGTATACCCTTGCGATTATCGTGGGCAGAGGCTCT
GGTAGAGAGGTTTGAGGCTAAAGGAATGGCAATAGAGGCCGTGAAGGACG
GGTTGCGAGGGAGTGGAAGCGCTCGTGGAAAGCTGGACGTAATTGCGTTC
GTGGAGTTTTTGCGGCTCAAAACCTTCTCGATCAGCGTCATGACTCCCTT
CGAATTGGTATCCGCCATGGGTCAGGGCGTGGGTATACCCTTGCGATTAT
CGTGGGCAGAGGCTCTGGTAGAGAGGTTTGAGGCTAAAGGAATGGCAATA
GAGGCCGTGAAGGACGGGTTGCGAGGGAGTGGAAGCGCTCGTGGAAAGCT
GGACGTAATTGCGTTCGTGGAGTTTTTGCGGCTCAAAACCTTCTCGATCA
GCGTCATGACTCCCTTCGGGCTGGTGGAACTGTCGGTACAAGACCCGCTG
CTCCCTCTTGGAGGACTGCGTGAAATGCTGGTGAAGAAGATGTTCTGGCG
TCAGCATAATTGCAACGTGGGCTGGTGGAACTGTCGGTACAAGACCCGCT
GCTCCCTCTTGGAGGACTGCGTGAAATGCTGGTGAAGAAGATGTTCTGGC
GTCAGCATAATTGCAACGTGCGTCGCTCCGAATTCCAGGTACGGCGATCA
GACAGAAACAACTTCTCTATTTCACGCCATTACGGCTCTCTGCCTCTGGA
CACGGAGTCACCTGAACAACGCCGGAAGCTCGTAGCAGACGTGCTAAGCG
TCGCTCCGAATTCCAGGTACGGCGATCAGACAGAAACAACTTCTCTATTT
CACGCCATTACGGCTCTCTGCCTCTGGACACGGAGTCACCTGAACAACGC
CGGAAGCTCGTAGCAGACGTGCTAAGACCAGGAGAGCTCTTGTTTGTCAC
GGACCGTCTGCCACCCAGGAAGAGGGGCGATCCGCGAGTCATTACCAGGA
GAGCTCTTGTTTGTCACGGACCGTCTGCCACCCAGGAAGAGGGGCGATCC
GCGAGTCATT
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