mRNA_H-paniculata_contig1780.4256.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1780.4256.1
Unique NamemRNA_H-paniculata_contig1780.4256.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1780.4256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1780contigH-paniculata_contig1780:860..1614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size268
Cds size264
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1780.4256.1prot_H-paniculata_contig1780.4256.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1780 860..1610 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929391.1444168-CDS-H-paniculata_contig1780:859..9911622929391.1444168-CDS-H-paniculata_contig1780:859..991Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1780 860..991 -
1691480842.0296981-CDS-H-paniculata_contig1780:859..9911691480842.0296981-CDS-H-paniculata_contig1780:859..991Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1780 860..991 -
1622929391.1553462-CDS-H-paniculata_contig1780:1478..16101622929391.1553462-CDS-H-paniculata_contig1780:1478..1610Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1780 1479..1610 -
1691480842.038388-CDS-H-paniculata_contig1780:1478..16101691480842.038388-CDS-H-paniculata_contig1780:1478..1610Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1780 1479..1610 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929391.1692605-UTR-H-paniculata_contig1780:1610..16141622929391.1692605-UTR-H-paniculata_contig1780:1610..1614Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1780 1611..1614 -
1691480842.0466661-UTR-H-paniculata_contig1780:1610..16141691480842.0466661-UTR-H-paniculata_contig1780:1610..1614Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1780 1611..1614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1780.4256.1

>prot_H-paniculata_contig1780.4256.1 ID=prot_H-paniculata_contig1780.4256.1|Name=mRNA_H-paniculata_contig1780.4256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
MPPPQLEGIAFPGCIFEWTSEQVERWISEAMELGIYRETFRRKQVDGATL
AGLTGARLRDEHEIANNFHVRKLLLHLDRLVQGALGHS
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mRNA from alignment at H-paniculata_contig1780:860..1614-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1780.4256.1 ID=mRNA_H-paniculata_contig1780.4256.1|Name=mRNA_H-paniculata_contig1780.4256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=755bp|location=Sequence derived from alignment at H-paniculata_contig1780:860..1614- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTATGCCACCCCCACAATTAGAAGGCATCGCGTTCCCAGGTTGTATCT
TCGAATGGACTTCTGAGCAGGTAGAAAGATGGATAAGCGAAGCTATGGAG
CTGGGTATATATCGGGAGACCTTTCGTAGGAAACAGGTAAATATTGTACC
CGTGTAATACAACTGGCTTACGAACGCTGGACGTGACTTTCCCAGAATAG
GTAGCAGAAACGCTTTGCCCTAGCCAGCTGGGAATAAAAGATAATATATG
TACCCGTGCATCGCACCAAGCTAGCAACCGAAAACGATCAAATCGCGACC
TGGAGTGGCGGCTAAACTAGTATCGACTTCTACTTCCCGAGTTGCCACAT
ACACACGGCTAAATGCGAATACAAACAAAGAAGCATGAGGATGAACTCTC
GAAAACGAGATCCTCTCAGATGTATGGAAAAGATGCATTGTCCTCTACAG
GCACTTATAGTAAGTTCAAACTTTGTGTGGCACGTTCAACTCAACATACT
CCAAAAGTTCATGGGAAAACGTTTTGTGTTGGAAATTCTGCCAACAATCA
CCACGGCCATCACTCCACCCGGAGTTGCTACGCGACTTTGAAACGTACTT
TGGGCTAAATTGGTACCTGGTAGGTCGATGGAGCCACTCTCGCAGGGCTA
ACCGGAGCGCGATTACGAGACGAACACGAAATAGCAAACAACTTCCATGT
GCGGAAGCTACTCCTGCATTTAGATCGTCTGGTACAGGGTGCGCTTGGCC
ACTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig1780:860..1614-

>mRNA_H-paniculata_contig1780.4256.1 ID=mRNA_H-paniculata_contig1780.4256.1|Name=mRNA_H-paniculata_contig1780.4256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig1780:860..1614- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCACCCCCACAATTAGAAGGCATCGCGTTCCCAGGTTGTATCTTCGA
ATGGACTTCTGAGCAGGTAGAAAGATGGATAAGCGAAGCTATGGAGCTGG
GTATATATCGGGAGACCTTTCGTAGGAAACAGATGCCACCCCCACAATTA
GAAGGCATCGCGTTCCCAGGTTGTATCTTCGAATGGACTTCTGAGCAGGT
AGAAAGATGGATAAGCGAAGCTATGGAGCTGGGTATATATCGGGAGACCT
TTCGTAGGAAACAGGTCGATGGAGCCACTCTCGCAGGGCTAACCGGAGCG
CGATTACGAGACGAACACGAAATAGCAAACAACTTCCATGTGCGGAAGCT
ACTCCTGCATTTAGATCGTCTGGTACAGGGTGCGCTTGGCCACTCGGTCG
ATGGAGCCACTCTCGCAGGGCTAACCGGAGCGCGATTACGAGACGAACAC
GAAATAGCAAACAACTTCCATGTGCGGAAGCTACTCCTGCATTTAGATCG
TCTGGTACAGGGTGCGCTTGGCCACTCG
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