mRNA_H-paniculata_contig1780.4259.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1780.4259.1
Unique NamemRNA_H-paniculata_contig1780.4259.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1780.4259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1780contigH-paniculata_contig1780:7560..8762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size390
Cds size381
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1780.4259.1prot_H-paniculata_contig1780.4259.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1780 7560..8755 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929391.0861573-CDS-H-paniculata_contig1780:7559..77661622929391.0861573-CDS-H-paniculata_contig1780:7559..7766Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1780 7560..7766 -
1691480841.9940557-CDS-H-paniculata_contig1780:7559..77661691480841.9940557-CDS-H-paniculata_contig1780:7559..7766Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1780 7560..7766 -
1622929391.0980802-CDS-H-paniculata_contig1780:8581..87551622929391.0980802-CDS-H-paniculata_contig1780:8581..8755Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1780 8582..8755 -
1691480842.004998-CDS-H-paniculata_contig1780:8581..87551691480842.004998-CDS-H-paniculata_contig1780:8581..8755Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1780 8582..8755 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929391.1098015-UTR-H-paniculata_contig1780:8755..87621622929391.1098015-UTR-H-paniculata_contig1780:8755..8762Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1780 8756..8762 -
1691480842.0153866-UTR-H-paniculata_contig1780:8755..87621691480842.0153866-UTR-H-paniculata_contig1780:8755..8762Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1780 8756..8762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1780.4259.1

>prot_H-paniculata_contig1780.4259.1 ID=prot_H-paniculata_contig1780.4259.1|Name=mRNA_H-paniculata_contig1780.4259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
MGQRHRKKKNINGGEPRGDGYRRGRWGSGDDSSVRTRGSGKLRGRGEKHG
SSAESMAENVNLVMDDSTTEANLAADKRQPADEKSAKDKDMETLKPTFEQ
QQQRTEEPTAIVDRSRAAPASATIVEQ
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mRNA from alignment at H-paniculata_contig1780:7560..8762-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1780.4259.1 ID=mRNA_H-paniculata_contig1780.4259.1|Name=mRNA_H-paniculata_contig1780.4259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1203bp|location=Sequence derived from alignment at H-paniculata_contig1780:7560..8762- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTGATATGGGTCAACGTCACCGCAAGAAAAAAAACATTAATGGCGGAG
AACCCCGTGGAGACGGCTATCGACGCGGTCGCTGGGGTTCGGGGGATGAT
TCCTCAGTAAGAACGAGAGGATCAGGCAAGCTAAGAGGAAGAGGAGAAAA
ACATGGTTCATCAGCAGAGAGCATGGCTGAGGTAAGCCGAGGTTATAATG
TCAGATACTCGGAGTACCTAGAGGAGGCGAGAGCGGGGATCTCCATCAAA
TATCAAAATATCAAACGCATAGCATACGACACACACCCATGCGGCAGCGC
AGCATATGTCGAACATGTTATACTGGATGCATCACGTGTTCTATCAGAGT
AGCATTTTTGCATAACGTGCGACACGTCGTTCATTAAGGCATTTGACCTT
GAAAATTACGTCAGCATGTGTTCCGAGACGGTGTCTACTACCGAAGCTAA
TACGTGCTCAAGGAAATTTTCTACCTGTTTTCACGACACCTTGTTGATTT
TTTGCGAAAGAAACAGCTAGTGTTACGAACAAAACGTGCCCTGTTGTTCT
TCACAAACGTCTTGATGGATCGCACAGTGCGTAAACGTGAACCTTTCCGC
GATAAGCCTCAAACGCGTAACTCCGGCAAGCGGTGTCTACACAGCAGCTA
GCTGCTGCACGAGGTTGTGATACCTGTAGTCTTGCTGCATGTAAGGCAAT
AGAATCCTTCGAAGAAGACAAGCGAATGTTGGATGAGCCTACCTGTCAAG
TTCTGACTTTCTACCATATCATTTTTGTCGATGTGACTACTGAGTTAGAC
ACAGTTTTTCACATCTGAACCATGTAATGTTGGGAGGTCCTCGGCTCTGA
CGTGGTCAAGAAAGCCCCGCTGAACATTGTAGTGTCGGCCACAATACCTT
ACGCGGTAAATAATTTAACACTCGCAAGTCGTCTCTCGCAAAAACGACAA
ATCATCGTTTCATTCTTGTCCGATAAACGTCTCGATCAACGACAAGAATG
TCAACCTGGTGATGGATGATTCTACGACTGAGGCCAACCTTGCCGCCGAT
AAGCGACAACCAGCAGACGAAAAATCCGCTAAAGATAAAGATATGGAGAC
GTTAAAGCCTACATTTGAGCAACAACAGCAGCGGACGGAAGAGCCAACTG
CAATCGTTGACAGATCGCGAGCTGCACCAGCGTCCGCCACGATTGTCGAG
CAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1780:7560..8762-

>mRNA_H-paniculata_contig1780.4259.1 ID=mRNA_H-paniculata_contig1780.4259.1|Name=mRNA_H-paniculata_contig1780.4259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig1780:7560..8762- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTCAACGTCACCGCAAGAAAAAAAACATTAATGGCGGAGAACCCCG
TGGAGACGGCTATCGACGCGGTCGCTGGGGTTCGGGGGATGATTCCTCAG
TAAGAACGAGAGGATCAGGCAAGCTAAGAGGAAGAGGAGAAAAACATGGT
TCATCAGCAGAGAGCATGGCTGAGATGGGTCAACGTCACCGCAAGAAAAA
AAACATTAATGGCGGAGAACCCCGTGGAGACGGCTATCGACGCGGTCGCT
GGGGTTCGGGGGATGATTCCTCAGTAAGAACGAGAGGATCAGGCAAGCTA
AGAGGAAGAGGAGAAAAACATGGTTCATCAGCAGAGAGCATGGCTGAGAA
TGTCAACCTGGTGATGGATGATTCTACGACTGAGGCCAACCTTGCCGCCG
ATAAGCGACAACCAGCAGACGAAAAATCCGCTAAAGATAAAGATATGGAG
ACGTTAAAGCCTACATTTGAGCAACAACAGCAGCGGACGGAAGAGCCAAC
TGCAATCGTTGACAGATCGCGAGCTGCACCAGCGTCCGCCACGATTGTCG
AGCAAAATGTCAACCTGGTGATGGATGATTCTACGACTGAGGCCAACCTT
GCCGCCGATAAGCGACAACCAGCAGACGAAAAATCCGCTAAAGATAAAGA
TATGGAGACGTTAAAGCCTACATTTGAGCAACAACAGCAGCGGACGGAAG
AGCCAACTGCAATCGTTGACAGATCGCGAGCTGCACCAGCGTCCGCCACG
ATTGTCGAGCAA
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