mRNA_H-paniculata_contig178.4254.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig178.4254.1
Unique NamemRNA_H-paniculata_contig178.4254.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig178.4254.1 vs. uniprot
Match: D7G430_ECTSI (Plastid thioredoxin M n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G430_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 1.010e-41
Identity = 85/140 (60.71%), Postives = 99/140 (70.71%), Query Frame = 2 
Query:  152 ASSGGRRPRTTETQALQRASIATYPPGIASNTAMLATATYTSFEDMLEKEPGPLLVDFYATWCGPCQQMGETLKEVGPKMKGEVKIMKIDTDKYPALTEKFAVAGLPTLILFKKGKELQRIEGFLPGDQLLQQVRYFLQG 571
            A +G R PRTT   AL        P    S+T + A ATY +FEDMLEKEPG LLVDFYATWCGPC  M + L  VGPKMK E+KI KIDTDKYP L  KF V GLPTL+LFK+GKEL R+EG +P + L+Q++RYFL G
Sbjct:   44 AKTGPRSPRTT---ALSYVCGGERP----SSTRLFAKATYKNFEDMLEKEPGALLVDFYATWCGPCSMMSDNLAVVGPKMKDELKIFKIDTDKYPNLMSKFGVNGLPTLVLFKEGKELTRMEGVMPAEMLIQELRYFLGG 176
[Close]
BLAST of mRNA_H-paniculata_contig178.4254.1 vs. uniprot
Match: A0A6H5JZH9_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH9_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 1.990e-37
Identity = 100/197 (50.76%), Postives = 120/197 (60.91%), Query Frame = 2 
Query:   11 RPTHDYSCYPVFAMKVTRRLV--ILSAAYLVNRAAGFV---TTITRNAGGNAAS-------SGGRRPRTTETQALQRASIATYPPGIASNTAMLATATYTSFEDMLEKEPGPLLVDFYATWCGPCQQMGETLKEVGPKMKGEVKIMKIDTDKYPALTEKFAVAGLPTLILFKKGKELQRIEGFLPGDQLLQQVRYFL 565
            R   D+   P  AM   R  V  +   A LV  A GFV     I+R +G  +A        +G R PRTT +  +     +   PG    T++ A ATY +FEDML KEPG LLVDFYATWCGPC  M E L  VGPKMK E+KI KIDTDKYP L  KF V GLPTL+LFK+GKEL R+EG +P + L+QQ+RYFL
Sbjct:  621 RSRFDFPDCPASAM---RNFVGSVAGVALLVVCAKGFVLPGVVISRCSGCTSAEGSRVDAKTGPRSPRTTASSYV----CSGERPG---TTSLFAKATYKNFEDMLAKEPGALLVDFYATWCGPCSMMSENLAVVGPKMKDELKIFKIDTDKYPNLMSKFGVNGLPTLVLFKEGKELTRMEGVMPAEMLIQQLRYFL 807
[Close]
BLAST of mRNA_H-paniculata_contig178.4254.1 vs. uniprot
Match: A0A2W7A323_9CYAN (Thioredoxin n=8 Tax=Cyanobacteria/Melainabacteria group TaxID=1798711 RepID=A0A2W7A323_9CYAN)

HSP 1 Score: 121 bits (304), Expect = 2.550e-29
Identity = 54/98 (55.10%), Postives = 70/98 (71.43%), Query Frame = 2 
Query:  251 MLATATYTSFEDMLEKEPGPLLVDFYATWCGPCQQMGETLKEVGPKMKGEVKIMKIDTDKYPALTEKFAVAGLPTLILFKKGKELQRIEGFLPGDQLL 544
            M     + SFED+L    GP+LVDFYATWCGPCQ M   L  V  ++KG++KI+KIDTDKYP +  ++ +A LPTL+LFK G+ + RIEG LP DQL+
Sbjct:    1 MAVKQQFQSFEDLLAGASGPVLVDFYATWCGPCQMMASILTTVSSQLKGQLKIVKIDTDKYPQIASQYRIAALPTLVLFKSGQPIDRIEGVLPADQLV 98
[Close]
BLAST of mRNA_H-paniculata_contig178.4254.1 vs. uniprot
Match: A0A8J7E5E3_9CYAN (Thioredoxin n=1 Tax=Nodosilinea sp. LEGE 07088 TaxID=2777968 RepID=A0A8J7E5E3_9CYAN)

HSP 1 Score: 120 bits (302), Expect = 4.830e-29
Identity = 55/96 (57.29%), Postives = 71/96 (73.96%), Query Frame = 2 
Query:  269 YTSFEDMLEKEPGPLLVDFYATWCGPCQQMGETLKEVGPKMKGEVKIMKIDTDKYPALTEKFAVAGLPTLILFKKGKELQRIEGFLPGDQLLQQVR 556
            + SFED+L     P+LVDFYATWCGPCQ M   L  V  ++KGE+KI+KIDTDKYP +  ++ VA LPTL+LFK GK + RIEG LP +QL+ ++R
Sbjct:    7 FQSFEDLLAGAETPVLVDFYATWCGPCQMMASILATVSRRLKGELKIVKIDTDKYPQIASQYQVAALPTLVLFKAGKPIDRIEGVLPAEQLVTRLR 102
[Close]
BLAST of mRNA_H-paniculata_contig178.4254.1 vs. uniprot
Match: UPI00093545F8 (thioredoxin n=1 Tax=Spirulina major TaxID=270636 RepID=UPI00093545F8)

HSP 1 Score: 120 bits (301), Expect = 6.850e-29
Identity = 54/99 (54.55%), Postives = 72/99 (72.73%), Query Frame = 2 
Query:  251 MLATATYTSFEDMLEKEPGPLLVDFYATWCGPCQQMGETLKEVGPKMKGEVKIMKIDTDKYPALTEKFAVAGLPTLILFKKGKELQRIEGFLPGDQLLQ 547
            M     +TSFED+L +   P+LVDFYATWCGPCQ M   L+EVG +MK +++I+KIDTDKYP L  ++ +  LPTL+LFK G+  +RIEG + G QL+Q
Sbjct:    1 MAVKKQFTSFEDLLTQATKPVLVDFYATWCGPCQMMAPLLEEVGYQMKDQIQIVKIDTDKYPQLASRYGIHALPTLVLFKNGQPAERIEGLMQGPQLVQ 99
[Close]
BLAST of mRNA_H-paniculata_contig178.4254.1 vs. uniprot
Match: A0A0D6R1X1_ARACU (Thioredoxin domain-containing protein n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6R1X1_ARACU)

HSP 1 Score: 122 bits (306), Expect = 1.140e-28
Identity = 64/143 (44.76%), Postives = 95/143 (66.43%), Query Frame = 2 
Query:  161 GGRRPRTTETQALQRASIATYPPGIAS---NTAMLATA-TYTSFEDMLEKEPGPLLVDFYATWCGPCQQMGETLKEVGPKMKGEVKIMKIDTDKYPALTEKFAVAGLPTLILFKKGKELQRIEGFLPGDQLLQQVRYFLQGAE 577
            GGRR    ++    R S+ T  P I+    N  + AT  T++SF++ML+K   P+LVDFYATWCGPCQ M   L++VG ++K +++++KIDT+KYP++  ++ V  LPT ILF+ G+   R EG LP DQL+ ++   LQGA+
Sbjct:   41 GGRR----QSSVTLRYSVKTCRPKISRRYLNLRVQATKQTFSSFDEMLKKSEQPVLVDFYATWCGPCQYMVPILEDVGRRLKDKIRVVKIDTEKYPSIASRYDVQALPTFILFRNGQPFDRFEGALPADQLVSRIEKILQGAK 179
[Close]
BLAST of mRNA_H-paniculata_contig178.4254.1 vs. uniprot
Match: K9UR76_CHAP6 (Thioredoxin n=2 Tax=Chamaesiphon TaxID=217161 RepID=K9UR76_CHAP6)

HSP 1 Score: 119 bits (298), Expect = 1.680e-28
Identity = 52/105 (49.52%), Postives = 73/105 (69.52%), Query Frame = 2 
Query:  251 MLATATYTSFEDMLEKEPGPLLVDFYATWCGPCQQMGETLKEVGPKMKGEVKIMKIDTDKYPALTEKFAVAGLPTLILFKKGKELQRIEGFLPGDQLLQQVRYFL 565
            M     +TSFED +     P+LVDFYATWCGPCQ M + L++V  ++ G+V+IMKIDTDKYP +   + +  LPTL+LFK G+ + R+EG LP +QL+ ++  FL
Sbjct:    1 MAVKQQFTSFEDAIANSDLPILVDFYATWCGPCQMMAKILEQVNIELNGQVRIMKIDTDKYPQIASNYQIQALPTLVLFKGGQSVDRLEGVLPAEQLIDRIGQFL 105
[Close]
BLAST of mRNA_H-paniculata_contig178.4254.1 vs. uniprot
Match: UPI000EFA9703 (thioredoxin n=1 Tax=Leptolyngbya sp. BC1307 TaxID=2029589 RepID=UPI000EFA9703)

HSP 1 Score: 119 bits (297), Expect = 2.450e-28
Identity = 54/102 (52.94%), Postives = 73/102 (71.57%), Query Frame = 2 
Query:  251 MLATATYTSFEDMLEKEPGPLLVDFYATWCGPCQQMGETLKEVGPKMKGEVKIMKIDTDKYPALTEKFAVAGLPTLILFKKGKELQRIEGFLPGDQLLQQVR 556
            M     + SF++M+     PLLVDFYA WCGPCQ M + L +VG +MKGEVK++KIDT+KYPA+  +  +  LPTL+LFK+G+ + RIEG L  DQL+ +VR
Sbjct:    1 MAVKQQFNSFDEMISGSDQPLLVDFYADWCGPCQMMAKILVQVGAEMKGEVKVVKIDTEKYPAIASQHQIHALPTLVLFKQGQPVDRIEGVLTADQLVARVR 102
[Close]
BLAST of mRNA_H-paniculata_contig178.4254.1 vs. uniprot
Match: A0A7Y3X5Z7_9FLAO (Thioredoxin n=1 Tax=Flavobacterium sp. CLA17 TaxID=2724135 RepID=A0A7Y3X5Z7_9FLAO)

HSP 1 Score: 118 bits (296), Expect = 3.180e-28
Identity = 53/102 (51.96%), Postives = 75/102 (73.53%), Query Frame = 2 
Query:  251 MLATATYTSFEDMLEKEPGPLLVDFYATWCGPCQQMGETLKEVGPKMKGEVKIMKIDTDKYPALTEKFAVAGLPTLILFKKGKELQRIEGFLPGDQLLQQVR 556
            M     +TSF++M+     P+LVDFYATWCGPCQ M + L+EV   MK ++KI+KIDTDKYP +  +  +  LPTL+LFK+G+ ++RIEG LP DQL+Q+++
Sbjct:    1 MTTKKEFTSFDEMIAGSELPVLVDFYATWCGPCQMMAKILEEVNAHMKEQIKIVKIDTDKYPHIASQHQIHALPTLVLFKQGQPVERIEGVLPADQLVQRLQ 102
[Close]
BLAST of mRNA_H-paniculata_contig178.4254.1 vs. uniprot
Match: A0A2T1C185_9CYAN (Thioredoxin n=1 Tax=Merismopedia glauca CCAP 1448/3 TaxID=1296344 RepID=A0A2T1C185_9CYAN)

HSP 1 Score: 118 bits (295), Expect = 4.370e-28
Identity = 48/105 (45.71%), Postives = 76/105 (72.38%), Query Frame = 2 
Query:  251 MLATATYTSFEDMLEKEPGPLLVDFYATWCGPCQQMGETLKEVGPKMKGEVKIMKIDTDKYPALTEKFAVAGLPTLILFKKGKELQRIEGFLPGDQLLQQVRYFL 565
            M     +TSFE+++     P+LVDFYATWCGPC  M + L+E+   +K  +K++K+DTDKYP ++ ++ +A LPTL+LFK G+ + +IEG LP +QL+Q+++ +L
Sbjct:    1 MAVKKQFTSFEEVISSSEQPVLVDFYATWCGPCHMMAKILEEINGYLKSRIKVVKVDTDKYPVISSQYGIAALPTLVLFKNGQPVDKIEGVLPPEQLIQRLQSYL 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig178.4254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G430_ECTSI1.010e-4160.71Plastid thioredoxin M n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JZH9_9PHAE1.990e-3750.76Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
A0A2W7A323_9CYAN2.550e-2955.10Thioredoxin n=8 Tax=Cyanobacteria/Melainabacteria ... [more]
A0A8J7E5E3_9CYAN4.830e-2957.29Thioredoxin n=1 Tax=Nodosilinea sp. LEGE 07088 Tax... [more]
UPI00093545F86.850e-2954.55thioredoxin n=1 Tax=Spirulina major TaxID=270636 R... [more]
A0A0D6R1X1_ARACU1.140e-2844.76Thioredoxin domain-containing protein n=2 Tax=Arau... [more]
K9UR76_CHAP61.680e-2849.52Thioredoxin n=2 Tax=Chamaesiphon TaxID=217161 RepI... [more]
UPI000EFA97032.450e-2852.94thioredoxin n=1 Tax=Leptolyngbya sp. BC1307 TaxID=... [more]
A0A7Y3X5Z7_9FLAO3.180e-2851.96Thioredoxin n=1 Tax=Flavobacterium sp. CLA17 TaxID... [more]
A0A2T1C185_9CYAN4.370e-2845.71Thioredoxin n=1 Tax=Merismopedia glauca CCAP 1448/... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig178contigH-paniculata_contig178:1461..5799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.5
Seed ortholog evalue2.3e-37
Seed eggNOG ortholog2880.D7G430
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0008047,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0030234,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044093,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0097237,GO:0098754,GO:0098772,GO:0098869,GO:1990748
EggNOG free text desc.glycerol ether metabolic process
EggNOG OGsCOG0526@1,KOG0910@2759
Ec32 ortholog descriptionplastid thioredoxin M
Ec32 orthologEc-19_000300.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Exons4
Model size1751
Cds size708
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig178.4254.1prot_H-paniculata_contig178.4254.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig178 2455..5750 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929389.4742353-UTR-H-paniculata_contig178:1460..24541622929389.4742353-UTR-H-paniculata_contig178:1460..2454Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig178 1461..2454 -
1691480841.6920252-UTR-H-paniculata_contig178:1460..24541691480841.6920252-UTR-H-paniculata_contig178:1460..2454Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig178 1461..2454 -
1622929389.6299381-UTR-H-paniculata_contig178:5750..57991622929389.6299381-UTR-H-paniculata_contig178:5750..5799Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig178 5751..5799 -
1691480841.7494352-UTR-H-paniculata_contig178:5750..57991691480841.7494352-UTR-H-paniculata_contig178:5750..5799Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig178 5751..5799 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929389.574835-CDS-H-paniculata_contig178:2454..27961622929389.574835-CDS-H-paniculata_contig178:2454..2796Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig178 2455..2796 -
1691480841.7055776-CDS-H-paniculata_contig178:2454..27961691480841.7055776-CDS-H-paniculata_contig178:2454..2796Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig178 2455..2796 -
1622929389.589847-CDS-H-paniculata_contig178:3291..33731622929389.589847-CDS-H-paniculata_contig178:3291..3373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig178 3292..3373 -
1691480841.7175834-CDS-H-paniculata_contig178:3291..33731691480841.7175834-CDS-H-paniculata_contig178:3291..3373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig178 3292..3373 -
1622929389.600979-CDS-H-paniculata_contig178:4004..42051622929389.600979-CDS-H-paniculata_contig178:4004..4205Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig178 4005..4205 -
1691480841.726742-CDS-H-paniculata_contig178:4004..42051691480841.726742-CDS-H-paniculata_contig178:4004..4205Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig178 4005..4205 -
1622929389.6146417-CDS-H-paniculata_contig178:5667..57501622929389.6146417-CDS-H-paniculata_contig178:5667..5750Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig178 5668..5750 -
1691480841.7370942-CDS-H-paniculata_contig178:5667..57501691480841.7370942-CDS-H-paniculata_contig178:5667..5750Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig178 5668..5750 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig178.4254.1

>prot_H-paniculata_contig178.4254.1 ID=prot_H-paniculata_contig178.4254.1|Name=mRNA_H-paniculata_contig178.4254.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=236bp
MKVTRRLVILSAAYLVNRAAGFVTTITRNAGGNAASSGGRRPRTTETQAL
QRASIATYPPGIASNTAMLATATYTSFEDMLEKEPGPLLVDFYATWCGPC
QQMGETLKEVGPKMKGEVKIMKIDTDKYPALTEKFAVAGLPTLILFKKGK
ELQRIEGFLPGDQLLQQVRYFLQGAEVAEGAATSAQQASACPPQPPQDAC
APPVAAAEQDACAPAPKDACSPPPRDSCAPPAPQS*
back to top

mRNA from alignment at H-paniculata_contig178:1461..5799-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig178.4254.1 ID=mRNA_H-paniculata_contig178.4254.1|Name=mRNA_H-paniculata_contig178.4254.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4339bp|location=Sequence derived from alignment at H-paniculata_contig178:1461..5799- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCTCATAACGGCCGACGCACGACTATTCCTGCTATCCTGTGTTCGCCA
TGAAGGTTACTAGGAGACTGGTGATTCTTTCGGCGGCTTACCTCGTGAAT
CGTGCTGCGGGTTTTGTTACAACAATTACCAGGTATTCCAAGGAGCTGTG
ACTGTGTGCGTGGATGGCCGAACAGTCCACTGTCTCACACGTAGAAAATC
GGACCTCACTCTATTATTATAGTAGATGGCAGCTGAGCTACGTGTTGTGC
TTTACGAATCAATACGCGACGTAATTTCAAGATGCATGTTTTTGTTTCCC
ACGTTGTATACGGCATGGCTGCAGGCGACGCGAGGCATATCTCATCGGTT
CCTATTTTATTTTCCCATCAGAGTACGGTACTTTTACATAGTACCGTGAC
TTGGAAATACACTGAGATCGCTGCGTCTTGAGTAGCTAGCTACGTAAACC
ACAAGAACAGCACAATTCCAAGAACACGACGCCACTGACTGTATGTTGCA
CACATACACTCACACACACACACACACACACACACACACACAACCCGTAT
AGGTGTTTCCTCCAGTAACGTGTTAGCCTAAATAGTCTAGACAGGACAAA
AGTTAGTCGGAAATACATGCGAATAGTACGCGGGTTGATCACAAGGTATG
TAGAAGAGAGGGAGGCGTGAGCAGACTTGCGGAAGTGATGTGGGTGGGCT
CTGGGGCGAGCGTTTGATGCTCTGGATGAAGGCCTCTTTGGTGCTCGTCA
TCGTGGGTATCTTCTTCGTCGACATCTCCGTGTCATATATTGTAGGTGAT
TGGTCGGTCCGCTCGACACCAAAAACAACGGTTACACAAGGAATACCGAC
TCCTGGCGTTCCGTAAAGGTTGCTACTCTTGGATAGACAAGAATGGTGTA
GATCACACAAAAAGCGAGAAAAAAACTGGACGAAAAATATTACAAAAAAA
ATTAAATAGCTCCACGGACCTACGCCCGAACGGGTAGGGTAGCTCGTGAA
CTGAGCATGACTGTAAGTCTAGTCAGAGGTCTTTTAGTGGGTGCAACCCC
CACACTGCCTACCTGGTTCAGCCGAACCGGGGTGGCGCCTACTCCGCAGA
GGAACAAATAACTGTTCTGTACAAGGAAATGTAGAAATACTTCGGTATGG
AAGCATCGGATAGAGGTTTTTGCCTTAGCCTTCAGGGGGTAAAAAAAAAA
ATGTCGAACAACAGCACGATCTTCTATTTCTCCTGCGGTATTGAACTGCA
GCTTATAGCTAAGCGTACTGCACTGATGAACTTCCTTGATGCCAACAAAT
ATTGGGGAATCGCTGCGCCTGAGAGAATTACCAGATCTCTGATAAACAAG
TATATGGGGCATCAAATTGCTGAAAGCTTGTTGTCGAAGAAATTAAATCT
GAAACCAAATTCCAGCAACAAATATTGAAACAGGTCGAGAATAATTCGGG
AATCGATTCATACGGTCTATGGATAGATATACAGAAGAAAACTTCGAGAA
CTATTGATTCAATCTTTAAATATTTTCAGGTATTCAAGTCTCAAACGACG
GTGTCGGTGGCAATTTGTTTTTCATGTCTCTCATTGTTGTGCAGGAACGC
AGGTGGTAACGCCGCGTCGAGCGGAGGTCGAAGACCCAGGACTACAGAAA
CTCAGGCGTTGCAACGCGCAAGTATCGCCACATATCCGCCGGGAATTGCA
TCGAACACGGCGATGTTGGCCACGGCAACATACACGAGCTTCGAGGATAT
GCTTGAGAAGGAGCCCGGACCTCTGCTGGTTGACTTTTATGCCACGTGAG
TTGGGTTACACGGGCGGGCGGGGGGGGAGTCATGAGCATGCAATAGTTGT
TAAATCATTGATCACACAACCTAGAGAATATGGAGGGGGATAGGAAGGGG
GAAGCGTAACGTAAGTAGCAGCAGAAAATTCATGTGTACGCTTATTCAGG
TGCCTAAATGTGTTTTACTGTTGGTGAAACTTCGGAAAAGTGTTCAGCAG
CTTGAAATAATGAGACTGAAGCCAAAGCTCAACCATATCGCCAATAGATA
AAATTGACCTGTTCTAGGGGGCAATACGAATATCCCATCGGGGTCAGTGT
CTGCTCGGGAGTTGAAAATGACGACTTCGATATCGCGTCCCACCATAGTA
TGATTGTGCGTTTGTGCGTTCAAGCTAGCCGCGTTACCAACCGTTTGTGG
ACCGTACATGTAGAACAATCATTTGCTATGAAAGCCGACCATTCGATGAA
GACCGTCATTTGTTTGTCAAAATATGACGTCGTGGTGTGCAGCGTTCAGC
GCCTATTGAGCACATGTGGCTGTACGTAGCCAAATTCGAAAATCGCCACT
GTTGTCAAGGGTATAAGGCGACTTTCAACCGCCTGCCGTGTGGCTGTTGG
AAATTTCGTTCTCAACCTGTGTATAGATGGTGTGGCCCGTGCCAACAGAT
GGGTGAGACGCTAAAGGAAGTGGGTCCCAAGATGAAGGGAGAGGTGAAAA
TTATGAAGGTGAGAGGCGCTTGCGGGTGTTTGTGGGGGTCCACCGAACTA
CGGTGGTGACGGTTGCATTATTTTGAGAAATTTATTTTGAAGCCTGGCTG
CTCCTTCGCGTTTTTTTTGCGTGCGTAGATTATGTCTTTTTTCGAAAAGC
ATAATTTTATCCCGAATAACGTACGTCAGTAGCCGTATCCTGATGCAGGC
GATAAGTGTAAATATGACCTGTAGCACTTTCGCGTCACGTGCTGGCGCCA
TGTTCTAGACCCCATTAAAGTTTGTGACTGCGGGTATGGGCGATCGGACA
AAGTGTTCGCAAGGGGGGCAAGAGGAGAGCATAATCTTGCTCACGGTTTT
CGTCATTGATGGAGTCATGGCTCCCAATATAACAATTATATGTTTCCGTC
TTTCCATTCCACTATTCTGCTAATATCTTCTCGCCCCACCCGCCCACCCC
CCCTGCCCCTGCCGTGATTGCCCGACCTGTACTTGGCGCTATGACTCACA
TAGATCGACACCGATAAGTACCCAGCGCTCACCGAGAAATTCGCCGTGGC
GGGTCTGCCTACTCTGATTCTCTTTAAGAAGGGAAAAGAATTGCAACGAA
TAGAAGGATTCTTGCCCGGAGATCAGCTTCTACAGCAGGTCCGATATTTC
CTGCAGGGTGCAGAGGTAGCAGAGGGTGCCGCGACATCAGCGCAGCAAGC
AAGCGCTTGCCCCCCCCAGCCACCGCAAGATGCATGCGCACCCCCCGTGG
CAGCGGCGGAGCAGGATGCATGCGCTCCCGCGCCCAAGGATGCTTGTTCT
CCGCCCCCACGAGATTCCTGTGCGCCGCCCGCTCCACAGTCGTAGCGCTT
CTTAGCCGATGCTGTTGCAGTTACAGTGCCTGTAGGGTTGCAGTCACACT
GGGTTGGTATGTACTCTAATTTTCCGTGAGATTATGAAGTACTTGTACGT
CGCTGGTGTGGTGCCCAGACGGTTGGTGTTTGGCCGTCTCTTCTCTGCGT
ACGTTCGTGTGTCAGGGTTTAATAGTTTATCAAGGTGTTGTGATTTTGTA
ACTTTCAGGCCGATATCGCCTTAATGCGCTCTTGATGTCGAGTACGCCTG
CACATCTACCCAAGTGTGCGACGTTATAGTGGAGTATTTGCTCGCTCTTC
TTCCAAAGTAATAGACGTGAGTATGTGATATCTCGAGAGCGAAACCGTAC
TCCTGTTCTAGTGATGTCGTTTTGTGTGACATACTGCGAGGGTGGCCGCA
GCTAATCTTTTGTCGCGTAATTTCTGGTTGATAGAGGGTCAAGCGTCAAA
AATTGGTCGCCGCAAGTAAAGTATTTGCTGCTGCTTCTCTTTCCAAGTCA
CTCGACCCTTACGGTTCCCAATGAATCTCGAACTCCATTGTTTTGTTCTC
ACACTGTGCTACCGCCCATGGTACCCTATTCATCAATGAAAAAGGTTGTT
CTTCAAATAACGAAATAACGAAGATGTACCAGCCAAAGCTCGACGTGTGG
AGCACCGTATTGGCCGCATTAAGTTGTGACAGGCTGACCCGGTTACGTAG
GACTGTGTATTTGACATTCAGATAGCGAGGGGTAATGCGCGGGGAAGTGT
GGGGTGAACACAGCGATTTTGACTGGGATTGAATCTGATTGTTCGAGACA
TGGAGCACGCACGGTATACGTCAGCATGTAGCCAGCTAAAAGTACTCCCC
CTCGCGTACGCCATCAAAATGCGCCCCATTCCGGCTCGACTTGCCTTCGC
CGCAGTTGTTACGGTACAATCGTGCCTCGATGATATCGTAGAATGGTCGA
TGTCAATTATCTTCACGTCTTAAAGGCCGTGAACTCGCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig178:1461..5799-

>mRNA_H-paniculata_contig178.4254.1 ID=mRNA_H-paniculata_contig178.4254.1|Name=mRNA_H-paniculata_contig178.4254.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1416bp|location=Sequence derived from alignment at H-paniculata_contig178:1461..5799- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGTTACTAGGAGACTGGTGATTCTTTCGGCGGCTTACCTCGTGAA
TCGTGCTGCGGGTTTTGTTACAACAATTACCAGATGAAGGTTACTAGGAG
ACTGGTGATTCTTTCGGCGGCTTACCTCGTGAATCGTGCTGCGGGTTTTG
TTACAACAATTACCAGGAACGCAGGTGGTAACGCCGCGTCGAGCGGAGGT
CGAAGACCCAGGACTACAGAAACTCAGGCGTTGCAACGCGCAAGTATCGC
CACATATCCGCCGGGAATTGCATCGAACACGGCGATGTTGGCCACGGCAA
CATACACGAGCTTCGAGGATATGCTTGAGAAGGAGCCCGGACCTCTGCTG
GTTGACTTTTATGCCACGAACGCAGGTGGTAACGCCGCGTCGAGCGGAGG
TCGAAGACCCAGGACTACAGAAACTCAGGCGTTGCAACGCGCAAGTATCG
CCACATATCCGCCGGGAATTGCATCGAACACGGCGATGTTGGCCACGGCA
ACATACACGAGCTTCGAGGATATGCTTGAGAAGGAGCCCGGACCTCTGCT
GGTTGACTTTTATGCCACATGGTGTGGCCCGTGCCAACAGATGGGTGAGA
CGCTAAAGGAAGTGGGTCCCAAGATGAAGGGAGAGGTGAAAATTATGAAG
ATGGTGTGGCCCGTGCCAACAGATGGGTGAGACGCTAAAGGAAGTGGGTC
CCAAGATGAAGGGAGAGGTGAAAATTATGAAGATCGACACCGATAAGTAC
CCAGCGCTCACCGAGAAATTCGCCGTGGCGGGTCTGCCTACTCTGATTCT
CTTTAAGAAGGGAAAAGAATTGCAACGAATAGAAGGATTCTTGCCCGGAG
ATCAGCTTCTACAGCAGGTCCGATATTTCCTGCAGGGTGCAGAGGTAGCA
GAGGGTGCCGCGACATCAGCGCAGCAAGCAAGCGCTTGCCCCCCCCAGCC
ACCGCAAGATGCATGCGCACCCCCCGTGGCAGCGGCGGAGCAGGATGCAT
GCGCTCCCGCGCCCAAGGATGCTTGTTCTCCGCCCCCACGAGATTCCTGT
GCGCCGCCCGCTCCACAGTCGTAGATCGACACCGATAAGTACCCAGCGCT
CACCGAGAAATTCGCCGTGGCGGGTCTGCCTACTCTGATTCTCTTTAAGA
AGGGAAAAGAATTGCAACGAATAGAAGGATTCTTGCCCGGAGATCAGCTT
CTACAGCAGGTCCGATATTTCCTGCAGGGTGCAGAGGTAGCAGAGGGTGC
CGCGACATCAGCGCAGCAAGCAAGCGCTTGCCCCCCCCAGCCACCGCAAG
ATGCATGCGCACCCCCCGTGGCAGCGGCGGAGCAGGATGCATGCGCTCCC
GCGCCCAAGGATGCTTGTTCTCCGCCCCCACGAGATTCCTGTGCGCCGCC
CGCTCCACAGTCGTAG
back to top