mRNA_H-paniculata_contig17772.4246.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17772.4246.1
Unique NamemRNA_H-paniculata_contig17772.4246.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17772.4246.1 vs. uniprot
Match: A0A6H5JFK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFK3_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 1.620e-46
Identity = 75/100 (75.00%), Postives = 89/100 (89.00%), Query Frame = 1 
Query:    1 QVNCYQEVLVLLWQLMQENPAFTQYILKHCDMNEILVPICFLLVENRKDESKGGLIHICTFILLKLSGERLFGLAINKPCIARLPTDLPLFTGELIDWLV 300
            +V CYQEVLVLLW+L++ENP F QY+LK+CD+NEILVP+C+LLVENRKD SKGGLIHICTF+LLKLSGER FG+AINK C  RLPTDLPLF+G  +D L+
Sbjct:  368 EVYCYQEVLVLLWKLLEENPVFMQYVLKNCDINEILVPVCYLLVENRKDVSKGGLIHICTFVLLKLSGERAFGVAINKACSVRLPTDLPLFSGSHLDLLI 467
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BLAST of mRNA_H-paniculata_contig17772.4246.1 vs. uniprot
Match: D7FT96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT96_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 6.110e-45
Identity = 75/100 (75.00%), Postives = 88/100 (88.00%), Query Frame = 1 
Query:    1 QVNCYQEVLVLLWQLMQENPAFTQYILKHCDMNEILVPICFLLVENRKDESKGGLIHICTFILLKLSGERLFGLAINKPCIARLPTDLPLFTGELIDWLV 300
            +V CYQEVLVLLW+L++ENP F QY+LK+CD+NEILVP+C+LLVENRKD SKGGLIHICTF+LLKLSGER FG+AINK C  RLPTDLPLF G  +D L+
Sbjct:  407 EVYCYQEVLVLLWKLLEENPVFMQYVLKNCDINEILVPVCYLLVENRKDVSKGGLIHICTFVLLKLSGERAFGVAINKACSVRLPTDLPLFYGSHLDLLI 506
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BLAST of mRNA_H-paniculata_contig17772.4246.1 vs. uniprot
Match: A0A7S0AU24_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AU24_9STRA)

HSP 1 Score: 133 bits (334), Expect = 3.030e-36
Identity = 57/96 (59.38%), Postives = 79/96 (82.29%), Query Frame = 1 
Query:    4 VNCYQEVLVLLWQLMQENPAFTQYILKHCDMNEILVPICFLLVENRKDESKGGLIHICTFILLKLSGERLFGLAINKPCIARLPTDLPLFTGELID 291
            + C+QE+LVL W+L++ENP FT +IL  CD+NEI+VPIC+L+ ++R+D ++ GL+HICTF+LLKLSGER FG+ +NKP + RLP DLPLF+G   D
Sbjct:   91 LECFQELLVLFWKLLEENPLFTTHILTQCDVNEIIVPICYLMYQSRRDPARIGLVHICTFVLLKLSGERSFGVNLNKPFLKRLPCDLPLFSGSHAD 186
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BLAST of mRNA_H-paniculata_contig17772.4246.1 vs. uniprot
Match: A0A7S0PWE9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PWE9_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.100e-35
Identity = 54/96 (56.25%), Postives = 78/96 (81.25%), Query Frame = 1 
Query:    4 VNCYQEVLVLLWQLMQENPAFTQYILKHCDMNEILVPICFLLVENRKDESKGGLIHICTFILLKLSGERLFGLAINKPCIARLPTDLPLFTGELID 291
            + C+QE+LVLLW+ ++ENP F  +IL HCD+N+++VPIC+L+ ++R+D ++ GL+HICTFILLKLSGER FG+++ KP   +LP DLPLF+G   D
Sbjct:   21 LECFQELLVLLWKFLEENPLFMNHILTHCDINQLIVPICYLMYQSRRDPAQIGLVHICTFILLKLSGERSFGVSLYKPFTTKLPCDLPLFSGSHTD 116
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BLAST of mRNA_H-paniculata_contig17772.4246.1 vs. uniprot
Match: A0A7S1YU74_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YU74_TRICV)

HSP 1 Score: 130 bits (327), Expect = 2.530e-33
Identity = 58/96 (60.42%), Postives = 77/96 (80.21%), Query Frame = 1 
Query:    4 VNCYQEVLVLLWQLMQENPAFTQYILKHCDMNEILVPICFLLVENRKDESKGGLIHICTFILLKLSGERLFGLAINKPCIARLPTDLPLFTGELID 291
            + C+QE+LVL W+L++ENP FTQ+IL  CD+NEI+VPICFL+ ++R+D ++ GL+HICTF+LLKLSGER FG+ +NK    RLP DLPLF G   D
Sbjct:  187 LECFQELLVLFWKLLEENPLFTQHILTQCDVNEIVVPICFLMYQSRRDPAQIGLVHICTFVLLKLSGERSFGVNLNKAFNTRLPCDLPLFNGSHSD 282
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BLAST of mRNA_H-paniculata_contig17772.4246.1 vs. uniprot
Match: A0A7S2MCI4_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MCI4_9STRA)

HSP 1 Score: 129 bits (323), Expect = 3.990e-33
Identity = 55/96 (57.29%), Postives = 78/96 (81.25%), Query Frame = 1 
Query:    4 VNCYQEVLVLLWQLMQENPAFTQYILKHCDMNEILVPICFLLVENRKDESKGGLIHICTFILLKLSGERLFGLAINKPCIARLPTDLPLFTGELID 291
            + C+QE+LVLLW+L++ENP F  ++L  CD+NEI+VPICFL+ ++R+D ++ GL+HICTF+LLKLSGER FG+ +NKP   +LP D+PLF+G   D
Sbjct:   89 LECFQELLVLLWKLLEENPLFMNHLLTQCDVNEIVVPICFLMYQSRRDPARIGLVHICTFVLLKLSGERSFGVNLNKPFKTKLPCDIPLFSGSHSD 184
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BLAST of mRNA_H-paniculata_contig17772.4246.1 vs. uniprot
Match: A0A7S2UYH4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYH4_9STRA)

HSP 1 Score: 130 bits (326), Expect = 4.390e-33
Identity = 56/100 (56.00%), Postives = 79/100 (79.00%), Query Frame = 1 
Query:    1 QVNCYQEVLVLLWQLMQENPAFTQYILKHCDMNEILVPICFLLVENRKDESKGGLIHICTFILLKLSGERLFGLAINKPCIARLPTDLPLFTGELIDWLV 300
            Q   YQE+L+LLW+L++EN  FT Y+LKHCD+ ++L PIC+L+ E R+D++K GL+HICTF+LL+LSGER FG+A+NK    RLP +LP+F G   D+L+
Sbjct:  403 QCTAYQELLILLWKLLEENGQFTAYVLKHCDITQVLTPICYLMFEARRDDAKIGLVHICTFLLLRLSGERNFGVALNKLFDQRLPMELPIFKGNFADFLI 502
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BLAST of mRNA_H-paniculata_contig17772.4246.1 vs. uniprot
Match: A0A7S2XNZ9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XNZ9_9STRA)

HSP 1 Score: 130 bits (326), Expect = 5.740e-33
Identity = 56/96 (58.33%), Postives = 77/96 (80.21%), Query Frame = 1 
Query:    4 VNCYQEVLVLLWQLMQENPAFTQYILKHCDMNEILVPICFLLVENRKDESKGGLIHICTFILLKLSGERLFGLAINKPCIARLPTDLPLFTGELID 291
            + C+QE+LV+ W++++ENP F  +IL  CD+NEI+VPIC+L+ ++RKD ++ GL+HICTF+LLKLSGER FG+ +NKP   RLP DLPLFTG   D
Sbjct:  439 LECFQELLVIFWKMLEENPMFINHILTKCDVNEIIVPICYLMYQSRKDPAQIGLVHICTFVLLKLSGERSFGVNLNKPFTTRLPCDLPLFTGGHTD 534
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BLAST of mRNA_H-paniculata_contig17772.4246.1 vs. uniprot
Match: A0A7S4QDA8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QDA8_9STRA)

HSP 1 Score: 129 bits (324), Expect = 6.710e-33
Identity = 55/96 (57.29%), Postives = 78/96 (81.25%), Query Frame = 1 
Query:    4 VNCYQEVLVLLWQLMQENPAFTQYILKHCDMNEILVPICFLLVENRKDESKGGLIHICTFILLKLSGERLFGLAINKPCIARLPTDLPLFTGELID 291
            + C+QE+LVLLW+L++ENP F  ++L  CD+NEI+VPICFL+ ++R+D ++ GL+HICTF+LLKLSGER FG+ +NKP   +LP D+PLF+G   D
Sbjct:  190 LECFQELLVLLWKLLEENPLFMNHLLTQCDVNEIIVPICFLMYQSRRDPARIGLVHICTFVLLKLSGERSFGVNLNKPFKTKLPCDMPLFSGSHSD 285
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BLAST of mRNA_H-paniculata_contig17772.4246.1 vs. uniprot
Match: A0A7S4AAH7_9STRA (Hypothetical protein n=3 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A7S4AAH7_9STRA)

HSP 1 Score: 129 bits (325), Expect = 7.770e-33
Identity = 57/98 (58.16%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:    4 VNCYQEVLVLLWQLMQENPAFTQYILKHCDMNEILVPICFLLVENRKDESKGGLIHICTFILLKLSGERLFGLAINKPCIARLPTDLPLFTGELIDWL 297
            + C+QE+LVLLW+ ++ENP F  ++L  CD+NE++VPICFL+ ++R+D ++ GL+HICTF LLKLSGER FG+A+NKP   +LPTDLPLF+G   D L
Sbjct:  432 LECFQELLVLLWKFLEENPLFMNHVLTKCDINELVVPICFLMYKSRRDPAQIGLVHICTFCLLKLSGERSFGVALNKPFTKKLPTDLPLFSGGHHDLL 529
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17772.4246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFK3_9PHAE1.620e-4675.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT96_ECTSI6.110e-4575.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0AU24_9STRA3.030e-3659.38Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A7S0PWE9_9STRA1.100e-3556.25Hypothetical protein (Fragment) n=1 Tax=Asterionel... [more]
A0A7S1YU74_TRICV2.530e-3360.42Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2MCI4_9STRA3.990e-3357.29Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2UYH4_9STRA4.390e-3356.00Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2XNZ9_9STRA5.740e-3358.33Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S4QDA8_9STRA6.710e-3357.29Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4AAH7_9STRA7.770e-3358.16Hypothetical protein n=3 Tax=Pseudo-nitzschia TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17772contigH-paniculata_contig17772:870..1400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.0
Seed ortholog evalue9e-39
Seed eggNOG ortholog2880.D7FT96
Preferred nameHID1
Hectar predicted targeting categoryother localisation
GOsGO:0000138,GO:0000139,GO:0002119,GO:0002164,GO:0002791,GO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005797,GO:0005829,GO:0005856,GO:0005874,GO:0005881,GO:0006810,GO:0006886,GO:0006950,GO:0007275,GO:0007588,GO:0008104,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009791,GO:0009987,GO:0010033,GO:0010035,GO:0010037,GO:0012505,GO:0014070,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0019898,GO:0030421,GO:0031001,GO:0031090,GO:0031312,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0032879,GO:0033036,GO:0034613,GO:0035690,GO:0040011,GO:0040024,GO:0042221,GO:0042493,GO:0042886,GO:0042995,GO:0043005,GO:0043051,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046677,GO:0046907,GO:0048519,GO:0048521,GO:0048856,GO:0050789,GO:0050795,GO:0050896,GO:0051046,GO:0051049,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060259,GO:0065007,GO:0070727,GO:0070887,GO:0071241,GO:0071244,GO:0071702,GO:0071705,GO:0072347,GO:0090087,GO:0090498,GO:0097458,GO:0098588,GO:0098791,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0120025,GO:1901700,GO:1901701,GO:1903745,GO:1903998,GO:1903999,GO:2000252
EggNOG free text desc.response to brefeldin A
EggNOG OGsKOG2226@1,KOG2226@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929388.4118764-CDS-H-paniculata_contig17772:869..10671622929388.4118764-CDS-H-paniculata_contig17772:869..1067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17772 870..1067 -
1691480841.316261-CDS-H-paniculata_contig17772:869..10671691480841.316261-CDS-H-paniculata_contig17772:869..1067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17772 870..1067 -
1622929388.4271312-CDS-H-paniculata_contig17772:1298..14001622929388.4271312-CDS-H-paniculata_contig17772:1298..1400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17772 1299..1400 -
1691480841.325595-CDS-H-paniculata_contig17772:1298..14001691480841.325595-CDS-H-paniculata_contig17772:1298..1400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17772 1299..1400 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17772.4246.1prot_H-paniculata_contig17772.4246.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17772 870..1400 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17772.4246.1

>prot_H-paniculata_contig17772.4246.1 ID=prot_H-paniculata_contig17772.4246.1|Name=mRNA_H-paniculata_contig17772.4246.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
QVNCYQEVLVLLWQLMQENPAFTQYILKHCDMNEILVPICFLLVENRKDE
SKGGLIHICTFILLKLSGERLFGLAINKPCIARLPTDLPLFTGELIDWLV
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mRNA from alignment at H-paniculata_contig17772:870..1400-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17772.4246.1 ID=mRNA_H-paniculata_contig17772.4246.1|Name=mRNA_H-paniculata_contig17772.4246.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=531bp|location=Sequence derived from alignment at H-paniculata_contig17772:870..1400- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGAACTGCTATCAGGAGGTGTTGGTGCTTCTGTGGCAGCTGATGCA
AGAGAACCCCGCGTTCACCCAATATATTCTCAAGCATTGCGACATGAACG
AGGTATGTAAATATATATACATGTGATAAGATGGTACCGGTATCGTCTCT
GGTGTTTTAGTCAAGGAAGTTAGAGAGATCTACATACCACACTGTGTGCC
ACCGTATTGCAATAGTAGCAATGATAACTCAGAATATCGTGTGGTTTTAA
TTTTGTTAGATTCTCGTGTTTAGTTTCTAATTATTTTTATTTATTTTTAT
TCATTTTTTTTTTTTTTGTGTTTGTTTTGCCAGATCTTGGTGCCCATCTG
CTTCCTGCTGGTGGAAAATCGTAAAGACGAGTCGAAGGGGGGCTTGATCC
ACATCTGCACCTTTATCCTGCTCAAACTGTCGGGGGAGCGGCTGTTCGGC
CTCGCCATCAACAAACCTTGCATCGCTAGACTACCGACTGACCTTCCTCT
GTTCACAGGTGAGTTGATCGATTGGTTGGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig17772:870..1400-

>mRNA_H-paniculata_contig17772.4246.1 ID=mRNA_H-paniculata_contig17772.4246.1|Name=mRNA_H-paniculata_contig17772.4246.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig17772:870..1400- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGAACTGCTATCAGGAGGTGTTGGTGCTTCTGTGGCAGCTGATGCA
AGAGAACCCCGCGTTCACCCAATATATTCTCAAGCATTGCGACATGAACG
AGCAGGTGAACTGCTATCAGGAGGTGTTGGTGCTTCTGTGGCAGCTGATG
CAAGAGAACCCCGCGTTCACCCAATATATTCTCAAGCATTGCGACATGAA
CGAGATCTTGGTGCCCATCTGCTTCCTGCTGGTGGAAAATCGTAAAGACG
AGTCGAAGGGGGGCTTGATCCACATCTGCACCTTTATCCTGCTCAAACTG
TCGGGGGAGCGGCTGTTCGGCCTCGCCATCAACAAACCTTGCATCGCTAG
ACTACCGACTGACCTTCCTCTGTTCACAGGTGAGTTGATCGATTGGTTGG
TTATCTTGGTGCCCATCTGCTTCCTGCTGGTGGAAAATCGTAAAGACGAG
TCGAAGGGGGGCTTGATCCACATCTGCACCTTTATCCTGCTCAAACTGTC
GGGGGAGCGGCTGTTCGGCCTCGCCATCAACAAACCTTGCATCGCTAGAC
TACCGACTGACCTTCCTCTGTTCACAGGTGAGTTGATCGATTGGTTGGTT
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