mRNA_H-paniculata_contig17740.4236.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17740.4236.1
Unique NamemRNA_H-paniculata_contig17740.4236.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17740.4236.1 vs. uniprot
Match: D8LTI7_ECTSI (Rhodanese domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTI7_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 7.670e-35
Identity = 70/107 (65.42%), Postives = 89/107 (83.18%), Query Frame = 3 
Query:   18 LEGSLSKLKQYQGGMSQNPAEALAACPEELSLTVEEGDDGRPKVLTMPYVKGKLERDSIVQPGMVIIEVGNSPVPGGHFGSVSDCRRTLDAASYPTTLTFRDVSKYL 338
            LEGSLS+LKQYQ  +S +P+E LAA PE+LSL VEEG DGRP VL+MPYV+GKLE+  ++QPGMV++ +  +P+ GGHF SVSDCRR+LDA +YP TLTFRD+ K+L
Sbjct: 1407 LEGSLSRLKQYQNAVSASPSEVLAATPEDLSLKVEEGKDGRPVVLSMPYVRGKLEKGGVIQPGMVLVAIDGAPIAGGHFASVSDCRRSLDAVAYPCTLTFRDMPKWL 1513
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17740.4236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTI7_ECTSI7.670e-3565.42Rhodanese domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17740contigH-paniculata_contig17740:1131..4742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue5.2e-29
Seed eggNOG ortholog2880.D8LTI7
Hectar predicted targeting categoryother localisation
EggNOG OGs28JPJ@1,2QS2W@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_005770.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size2274
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17740.4236.1prot_H-paniculata_contig17740.4236.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17740 3028..4085 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929386.1605496-UTR-H-paniculata_contig17740:1130..30271622929386.1605496-UTR-H-paniculata_contig17740:1130..3027Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17740 1131..3027 -
1691480840.4084446-UTR-H-paniculata_contig17740:1130..30271691480840.4084446-UTR-H-paniculata_contig17740:1130..3027Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17740 1131..3027 -
1622929386.6406505-UTR-H-paniculata_contig17740:4085..40971622929386.6406505-UTR-H-paniculata_contig17740:4085..4097Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17740 4086..4097 -
1691480840.4343305-UTR-H-paniculata_contig17740:4085..40971691480840.4343305-UTR-H-paniculata_contig17740:4085..4097Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17740 4086..4097 -
1622929386.6513908-UTR-H-paniculata_contig17740:4695..47421622929386.6513908-UTR-H-paniculata_contig17740:4695..4742Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17740 4696..4742 -
1691480840.4418087-UTR-H-paniculata_contig17740:4695..47421691480840.4418087-UTR-H-paniculata_contig17740:4695..4742Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17740 4696..4742 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929386.2835689-CDS-H-paniculata_contig17740:3027..31951622929386.2835689-CDS-H-paniculata_contig17740:3027..3195Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17740 3028..3195 -
1691480840.418632-CDS-H-paniculata_contig17740:3027..31951691480840.418632-CDS-H-paniculata_contig17740:3027..3195Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17740 3028..3195 -
1622929386.6292999-CDS-H-paniculata_contig17740:3935..40851622929386.6292999-CDS-H-paniculata_contig17740:3935..4085Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17740 3936..4085 -
1691480840.426359-CDS-H-paniculata_contig17740:3935..40851691480840.426359-CDS-H-paniculata_contig17740:3935..4085Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17740 3936..4085 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17740.4236.1

>prot_H-paniculata_contig17740.4236.1 ID=prot_H-paniculata_contig17740.4236.1|Name=mRNA_H-paniculata_contig17740.4236.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
MSQNPAEALAACPEELSLTVEEGDDGRPKVLTMPYVKGKLERDSIVQPGM
VIIEVGNSPVPGGHFGSVSDCRRTLDAASYPTTLTFRDVSKYLWLSRMLA
AGAPK*
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mRNA from alignment at H-paniculata_contig17740:1131..4742-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17740.4236.1 ID=mRNA_H-paniculata_contig17740.4236.1|Name=mRNA_H-paniculata_contig17740.4236.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3612bp|location=Sequence derived from alignment at H-paniculata_contig17740:1131..4742- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCGGAGGGCGGGGGGCTGGAGGGCTCGCTTTCGAAGTTAAAGCAGGTG
GGAGAGCATTGCGATTGGGCCGCTTTGCGTCATTCTATTCAACTTGTTTT
GCATATTTTGCACCATTTAATTGCCCATAGATTTGTTTTACAAGATGAGG
GTGTGCATTTTTCGTTCCAAACTGTTCGCATTTTGGTCGTTACTCGCATG
TGACAGTTTCATATTCGTTTTTTCCTCAGCATATGCGAGGTATTGTACAT
GTTTTTCAACAGGACCTGCCCGAAGGAGAATGTTCTTGTGATTTATCGTC
GTTTGCATCATTTTCTACTTGCTCCGCGTGAATCCAACCTCATTCGTTAG
TTCAAAGAAAGTACTTACCAGCGGAACCCCTGCTCGGCTCCACTATCGCA
CAGTATCCTAGCACAAGTAGATTTCGGAAAATCGCTACCGGAACGCTACC
CAGTGTTTTGTACCCGTCTCTTTTGCCCTATTTGCCGTTCGTGAAACGAA
AAAACCAGGAGTGCAAAATCGCATCTTGCTTCCATCGTCTGAACGAATTT
CACCATGGACTTTTTATCGAAAAATTCATTTTTGTTGAATGACCTTGACG
TTGTGTGCCCGCTGCGATGTGTCACGTCCCTGACTTCGTATTCAGTACCA
GGGCGGCATGTCGCAAAATCCAGCCGAGGCATTGGCAGCTTGTCCAGAGG
AATTGTCCCTTACCGTGGAGGAAGGAGATGACGGCCGCCCGAAGGTGCTG
ACGATGCCTTACGTGAAGGGAAAGCTGGAGAGGGACAGCATTGTCCAACC
GGGGATGGTACGTGTGCCGTGCTTGTTGAGCATATGGACTGTGGTTTAAT
ATGTGGTGGTGATGGTGGTGGTTGTCGTGGTGGTGTTTTTTTGCTTCTCA
GACAAACTTGAACACGAAATTTGAATTTGAAGTTTCACTTATTCGTTGTC
GTTTGCGATCCTTGTTGCGGGTTACACGCCAGGATTTGCAATGGTGTGGT
GACCCTTTGTTGGGTCCCTCATACAATGAATCGCTTGATATTATCACTTT
CCCCCTCAAAATGGAAACCTTTCACCCTATCGTCACCTTCACGTGACCAA
TCGCGAACCGATCGTAAACAGTGAAAATCTCGTTTAATTTGGTTGGTTTG
TGGAATCAGTCACCCAGCAGTACTAATGATCACTCGACGTACATACCTCC
AAATTTGCTCATGCTTATCGGCATGACTTCTCTATGTCTTTGGTACATCT
GTTTGACCGTATTTGCCATGTTGCCGAGAACGGCCTGTTGGCGAAATTGT
CCCTGGCAAGAGGCGCGAGTGATACGGAATAACCCTTGCCCGTCCTACTC
GTTCAATTTTGCTGACAAGTGTACACGACTGGAGATTAAAGTCAGTTGCA
TAACGTCGACATGCCCCCCCCGTCCCCCCAAAGCACCGTCCTTGCGAGGA
CGCATGGTCAATGGCCAAGCAACTACGATTTGCAAAACACAAGTACCTTC
CCCTCCCCCCCCCCTCCCCCCCCCCATACACACACACACTACCACAGGTT
ATCATCGAGGTCGGAAACTCGCCAGTACCTGGAGGACACTTCGGCTCTGT
CTCAGACTGTCGTCGCACCCTCGATGCCGCTTCCTATCCGACCACGCTGA
CTTTCCGCGATGTATCCAAGTATCTATGGCTCTCGCGTATGCTCGCTGCA
GGGGCTCCCAAGTAAGGAGGCTGATGGTTCACCACATGTCTTTTGATGTA
CGATCTGTGTAGTTCTCATGTTCAGCAGAATTGGGATATAGTTCTCTGCA
TGGTACTGGAATTTTGTACTTGTACCCATAACGGAGGACGTTCGGAAAGG
CCGTGTTGTTGTGAGCGGACGGATGGTTGTTCTTGCAACGTTTGACACGT
GTATTGTACTTCGAGAGAGGTTCTGAACAGTACAGTCTTTTGTTGCCAGT
TGTCCCCCCCCCCCCCGCACTCCTCCCGCACCACCACCCTCGGCGCGCTG
TTTCGTTAACTAACCAAAACAATTCTCCGTAGCTATCAAGGACGGGGAGG
GGTAGATATTTAGATGTTGGTGCAGTATTTGTGATGGCAGGGATACATAG
CACGTGTATTTTGTCGACATCTGTTGGGGGCTGTGGTGGAACCTTCAAAT
TTGTCAACATTTTTTTTGTGGGCAGCGACAATTGTGGCACAGTCCGTGCT
GTTGTGCCGTTGCCCTTCTGCCCTGGTATGTTACTTGTGCAAGGGAGGGT
GATCCATCAAAGACGTGAGGGCTGCAAAGTGGGTGGGACCAACAGGTTTT
CATGTGTTGGGTGTTTTGAATTGGTGAACTGTTGAGCATTGTAATTTGGT
GAATTGTAAAGTCTGGGGAAGTGACTGCAGCAGTGATCCAGTCGCAGCAA
GTTGAGTTGGAGTAGTTCTGGTGTATATGTTTGGTCCATGAGTTGTCTAG
TTTCCGCAGCATGAGCGTTTAGGGAGAAGCTTTCACTGATAGAGCTCGAT
ATCTCCAAGTGACAGTTGCAAAGTAATAATGTTGTGATGAAGTTGAAAAT
GAGTTTTCAAATTGAGGTCGAGGGGTTTTGGCGATTTGTGAGCAAACTTA
AACAATTGGAATCGACCCCCATAACATAAAATAGCCACACCGAGCTCGTG
GTTATTCCGTCCGAATTGAACAACTTCGAGATTTGAGGTTGAATTAATGG
CGAAAAGCCTTTCAATCGATGGCAGTGTATGGGAAACTTCGATTCTTGGC
GATATCTCCAGATCTATCCAGCCCTTCTTTTTTCCTTCTTTCGAAGTTGA
TTGATTTCACGAGGAGTGCAAGGCGATGTCGGGTTTTTGTCCTGACTACC
AGATCTTTGCCCTCAAAAGTGCCAAAACCTTCCCACACTCAATATATTAT
CGATATGTTGTTGGATATGTCCATGTCTGTGTTTTTAGCTGGGTGATTTT
GCAGCATTTTCGTTATTTTCGTTTTGTGGTTCATGTTTGTGATGGTGATA
TTTGTTTCTTGTCGAGGCTAGATGGAGAAGCTCCAAAACGTAGGACTGAG
AATTGAAGACGAACGCGAGACAGAGGTGAGCGGGTGGTTAGGGTCTCACC
GATCCATGCAGTGGCAACGACTAAAAAGCTTCGCCCACCGTCAGCAGATG
GATGGTCTATCTCCGTCAAGTACTGTACACTACTGGAGCTAGGTAGCTCT
ACAGTAGAGTAGACAAAAAGCTCGTGGCTGCTTGGAATATCCACTCCACA
TATAAATTACAGACAAAATCCCCAGGACTCCTAGGTTGCTCGGCAGTCGA
ACATGTTTAGCTCACACTGGCAAGATAGATACTGTGTGCACAGTGGAATC
TGTTGTTATTCAAATCAGAACGAGACTTGAGTGTGGTTTCCCCCAACTTT
GACCTGGAAGACAGACGATTGAATGGATGCGCATTAAATATAGGTTTTAA
GGCCTGGGTCGTGGGAATAGCACGTCATTTCCAGATGTTTTAAGTGGACT
TATGCCGGCAGAGTTAGGAAAATCGGCCAATTCTTCGTATTCGCCACAAA
ATCGACTAAAAGCCATCCGTCCCGATGCAAAGAATTTGGCCGATTTGTTC
TAGCTTGCCGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig17740:1131..4742-

>mRNA_H-paniculata_contig17740.4236.1 ID=mRNA_H-paniculata_contig17740.4236.1|Name=mRNA_H-paniculata_contig17740.4236.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig17740:1131..4742- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGCAAAATCCAGCCGAGGCATTGGCAGCTTGTCCAGAGGAATTGTC
CCTTACCGTGGAGGAAGGAGATGACGGCCGCCCGAAGGTGCTGACGATGC
CTTACGTGAAGGGAAAGCTGGAGAGGGACAGCATTGTCCAACCGGGGATG
ATGTCGCAAAATCCAGCCGAGGCATTGGCAGCTTGTCCAGAGGAATTGTC
CCTTACCGTGGAGGAAGGAGATGACGGCCGCCCGAAGGTGCTGACGATGC
CTTACGTGAAGGGAAAGCTGGAGAGGGACAGCATTGTCCAACCGGGGATG
GTTATCATCGAGGTCGGAAACTCGCCAGTACCTGGAGGACACTTCGGCTC
TGTCTCAGACTGTCGTCGCACCCTCGATGCCGCTTCCTATCCGACCACGC
TGACTTTCCGCGATGTATCCAAGTATCTATGGCTCTCGCGTATGCTCGCT
GCAGGGGCTCCCAAGTAAGTTATCATCGAGGTCGGAAACTCGCCAGTACC
TGGAGGACACTTCGGCTCTGTCTCAGACTGTCGTCGCACCCTCGATGCCG
CTTCCTATCCGACCACGCTGACTTTCCGCGATGTATCCAAGTATCTATGG
CTCTCGCGTATGCTCGCTGCAGGGGCTCCCAAGTAA
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