mRNA_H-paniculata_contig1774.4233.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1774.4233.1
Unique NamemRNA_H-paniculata_contig1774.4233.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1774.4233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1774contigH-paniculata_contig1774:2189..2857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size439
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1774.4233.1prot_H-paniculata_contig1774.4233.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1774 2283..2857 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929385.728899-UTR-H-paniculata_contig1774:2188..22821622929385.728899-UTR-H-paniculata_contig1774:2188..2282Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1774 2189..2282 -
1691480840.2421293-UTR-H-paniculata_contig1774:2188..22821691480840.2421293-UTR-H-paniculata_contig1774:2188..2282Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1774 2189..2282 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929385.7421346-CDS-H-paniculata_contig1774:2282..25481622929385.7421346-CDS-H-paniculata_contig1774:2282..2548Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1774 2283..2548 -
1691480840.2502792-CDS-H-paniculata_contig1774:2282..25481691480840.2502792-CDS-H-paniculata_contig1774:2282..2548Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1774 2283..2548 -
1622929385.756293-CDS-H-paniculata_contig1774:2778..28571622929385.756293-CDS-H-paniculata_contig1774:2778..2857Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1774 2779..2857 -
1691480840.2640493-CDS-H-paniculata_contig1774:2778..28571691480840.2640493-CDS-H-paniculata_contig1774:2778..2857Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1774 2779..2857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1774.4233.1

>prot_H-paniculata_contig1774.4233.1 ID=prot_H-paniculata_contig1774.4233.1|Name=mRNA_H-paniculata_contig1774.4233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MTEQVEDKVRKIEEEEGVPRSAIFVGGSGSRSCSSSKTRRGACCTVYALS
FERRSVLLHRGEGRPRSACLDCGSGSASNVGWLRWLCFSYSCSALYLPTC
GSLPNSDISTRWDV*
back to top

mRNA from alignment at H-paniculata_contig1774:2189..2857-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1774.4233.1 ID=mRNA_H-paniculata_contig1774.4233.1|Name=mRNA_H-paniculata_contig1774.4233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=669bp|location=Sequence derived from alignment at H-paniculata_contig1774:2189..2857- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGGAGCAGGTGGAGGACAAGGTCCGAAAAATAGAGGAGGAAGAGGG
AGTGCCCAGAAGCGCGATCTTCGTTGGAGGTATGCGAAAGGCTACGAAGT
GATACGGCAATTTTCAAGTTGTCCTGTCTGTCCCACATCGATCGGGAAAA
TAATACAATGGGGGCTCAGAGTCAGAGAAATTCTCTGAGTCGAGAAAATT
CGTTTTTTTTTTTTTTTCCACTTTACTCAGATTTTTTTCCGCGTTGGAAT
TGAAGATAACGTGGCTCTCATAAATGTGTGAACATGTTCAAACCGCGCCA
ACCAACCAGGAAGCGGGTCTAGGTCATGTTCTAGTTCGAAAACGCGACGT
GGAGCCTGCTGTACTGTATATGCACTGTCATTCGAGCGTCGCTCCGTGTT
GCTACACCGTGGAGAAGGAAGACCTAGGTCAGCTTGTCTCGACTGCGGAT
CTGGGAGCGCATCAAACGTAGGGTGGTTGCGATGGCTTTGCTTCAGCTAC
AGTTGTTCTGCGCTCTACCTTCCGACATGTGGTTCTTTGCCCAACTCTGA
TATATCTACACGATGGGACGTTTGAAGATCGACGACGTCCTGACCAACAT
CGCCAGGAGCGGCCACGATCGCTAGACTCCTCGCGCTGTCGCTTACATCA
GGAGCTACCACAATTCCCA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1774:2189..2857-

>mRNA_H-paniculata_contig1774.4233.1 ID=mRNA_H-paniculata_contig1774.4233.1|Name=mRNA_H-paniculata_contig1774.4233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig1774:2189..2857- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGGAGCAGGTGGAGGACAAGGTCCGAAAAATAGAGGAGGAAGAGGG
AGTGCCCAGAAGCGCGATCTTCGTTGGAGATGACGGAGCAGGTGGAGGAC
AAGGTCCGAAAAATAGAGGAGGAAGAGGGAGTGCCCAGAAGCGCGATCTT
CGTTGGAGGAAGCGGGTCTAGGTCATGTTCTAGTTCGAAAACGCGACGTG
GAGCCTGCTGTACTGTATATGCACTGTCATTCGAGCGTCGCTCCGTGTTG
CTACACCGTGGAGAAGGAAGACCTAGGTCAGCTTGTCTCGACTGCGGATC
TGGGAGCGCATCAAACGTAGGGTGGTTGCGATGGCTTTGCTTCAGCTACA
GTTGTTCTGCGCTCTACCTTCCGACATGTGGTTCTTTGCCCAACTCTGAT
ATATCTACACGATGGGACGTTTGAGAAGCGGGTCTAGGTCATGTTCTAGT
TCGAAAACGCGACGTGGAGCCTGCTGTACTGTATATGCACTGTCATTCGA
GCGTCGCTCCGTGTTGCTACACCGTGGAGAAGGAAGACCTAGGTCAGCTT
GTCTCGACTGCGGATCTGGGAGCGCATCAAACGTAGGGTGGTTGCGATGG
CTTTGCTTCAGCTACAGTTGTTCTGCGCTCTACCTTCCGACATGTGGTTC
TTTGCCCAACTCTGATATATCTACACGATGGGACGTTTGA
back to top